View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2836_low_6 (Length: 506)

Name: NF2836_low_6
Description: NF2836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2836_low_6
NF2836_low_6
[»] chr1 (11 HSPs)
chr1 (18-493)||(46878963-46879446)
chr1 (113-305)||(29922349-29922544)
chr1 (103-284)||(5055917-5056099)
chr1 (357-446)||(29920734-29920823)
chr1 (108-240)||(6850145-6850281)
chr1 (381-446)||(6850642-6850707)
chr1 (386-446)||(3154821-3154881)
chr1 (132-212)||(37285479-37285560)
chr1 (114-212)||(38863434-38863533)
chr1 (192-305)||(3155195-3155310)
chr1 (168-213)||(26733425-26733471)
[»] chr4 (18 HSPs)
chr4 (108-305)||(37385729-37385932)
chr4 (107-305)||(42478121-42478318)
chr4 (108-305)||(31416518-31416717)
chr4 (116-305)||(48513365-48513556)
chr4 (107-305)||(29820148-29820348)
chr4 (117-295)||(52488655-52488836)
chr4 (383-446)||(42477791-42477854)
chr4 (110-305)||(48473418-48473615)
chr4 (357-446)||(37385383-37385473)
chr4 (107-305)||(53409817-53410013)
chr4 (381-446)||(31417009-31417074)
chr4 (381-446)||(52489087-52489152)
chr4 (381-446)||(53409454-53409519)
chr4 (114-211)||(33748237-33748335)
chr4 (381-446)||(48512995-48513060)
chr4 (382-440)||(29819826-29819884)
chr4 (71-107)||(28476504-28476540)
chr4 (114-209)||(54453868-54453964)
[»] chr6 (6 HSPs)
chr6 (108-305)||(27335447-27335646)
chr6 (108-305)||(27396187-27396386)
chr6 (132-212)||(18058415-18058496)
chr6 (381-437)||(27335955-27336011)
chr6 (381-437)||(27396695-27396751)
chr6 (108-212)||(7695185-7695290)
[»] chr8 (6 HSPs)
chr8 (107-305)||(9232818-9233020)
chr8 (381-446)||(9233329-9233394)
chr8 (110-190)||(32039052-32039132)
chr8 (114-212)||(30152403-30152502)
chr8 (114-212)||(31664819-31664918)
chr8 (168-212)||(35176397-35176442)
[»] chr3 (8 HSPs)
chr3 (108-305)||(26251182-26251381)
chr3 (381-444)||(49015938-49016001)
chr3 (114-211)||(7944225-7944323)
chr3 (109-213)||(49015465-49015569)
chr3 (114-212)||(19647627-19647726)
chr3 (381-446)||(26250840-26250905)
chr3 (250-305)||(49015592-49015647)
chr3 (269-305)||(24741233-24741269)
[»] chr2 (6 HSPs)
chr2 (115-305)||(34024743-34024936)
chr2 (114-213)||(14360106-14360205)
chr2 (250-301)||(23761098-23761149)
chr2 (129-212)||(7000447-7000531)
chr2 (404-446)||(34025237-34025279)
chr2 (132-209)||(42481219-42481296)
[»] chr7 (2 HSPs)
chr7 (107-214)||(42010683-42010790)
chr7 (382-446)||(42011124-42011188)
[»] chr5 (6 HSPs)
chr5 (132-240)||(32772349-32772461)
chr5 (381-446)||(32771590-32771655)
chr5 (114-212)||(14136402-14136501)
chr5 (114-211)||(11782165-11782263)
chr5 (132-212)||(1463735-1463816)
chr5 (132-211)||(40323394-40323474)
[»] scaffold0006 (1 HSPs)
scaffold0006 (382-446)||(282531-282595)


Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 493
Target Start/End: Original strand, 46878963 - 46879446
Alignment:
Q  18 aatacaatatctaaacaatgaaaccgaaaaaagataaattagattgtggcttgttgaagttgtctacgactacttttgcatctagatcaaggttccgtat 117  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || |||||    
T  46878963 aatacaatctctaaacaatgaaaccgaaaaaagataaattaggttgtggcttgttgaagttgtctacggctacttttgcatctagatcaagatttcgtat 46879062  T
Q  118 aaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacactctaa 217  Q
    |||| ||| |||||||||||||||| |||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46879063 aaaatgaacccatgaaaatattggtccatgatggactaattttttcaatggttagattatatgaatccctaaattttatcatggtctataaacactctaa 46879162  T
Q  218 cccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa--nnnnnnnnnn 315  Q
    ||||||||| ||||||||||||||        ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||                
T  46879163 cccatcttcccttataattttattaaaaaaaatcattttcaccctttataattattataatttaaaatattacatatttttacgttaattttcttttgga 46879262  T
Q  316 nnnnntttggtacagtaatttttgttgttggtattataatt------cggttatcaattatttannnnnnncattgtttttgtagaatcgtcaaattatc 409  Q
         ||||||||||||||||||||||||||||||||||||      |||||||||||||||||       |||||||||||||||||||||||||||||    
T  46879263 aaaattttggtacagtaatttttgttgttggtattataattcagttacggttatcaattatttatttttttcattgtttttgtagaatcgtcaaattatc 46879362  T
Q  410 ctttcaaaaagaataataatagcagtaataataaatattcatggtcactaatacacatataaacatcaacatgcatcaaccttc 493  Q
    | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46879363 cattcaaaaagaataataacagcagtaataataaatattcatggtcactaatacacatataaacatcaacatgcatcaaccttc 46879446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 113 - 305
Target Start/End: Complemental strand, 29922544 - 29922349
Alignment:
Q  113 cgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacac 212  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||| |||||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  29922544 cgtataaaatgaatccatggaaatattggttcatgatggaccaattttttcaatggttagattatatgaacccttaaattttatcatggtctataaacac 29922445  T
Q  213 tctaacccatcttctcttataattttat---ttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 305  Q
    |||||||||||||| |||||||||||||            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29922444 tctaacccatcttcccttataattttataaaaaaaaaaaatcattttcaccctttataattattataatttaaaatattacatatttttacggtaa 29922349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 103 - 284
Target Start/End: Complemental strand, 5056099 - 5055917
Alignment:
Q  103 atcaaggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggt 202  Q
    ||||||||||| ||||||| ||| |||||||||||||||| |||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||||||    
T  5056099 atcaaggttccttataaaatgaacccatgaaaatattggtccatgatggaccaa-tttttcaatggttagattatatgaatccctaaatcttatcatggt 5056001  T
Q  203 ctataaacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaa 284  Q
    ||||||||||    |||||||||| || |||||| ||||||  |       ||||||| ||||||| |||||||||||||||||||    
T  5056000 ctataaacactaaatctaacccatattttcttatcatttta--taaaaaaatcatttttaccctttataattattataatttaaaa 5055917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 357 - 446
Target Start/End: Complemental strand, 29920823 - 29920734
Alignment:
Q  357 cggttatcaattatttannnnnnncattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 446  Q
    |||||||||||||||||       ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  29920823 cggttatcaattatttatttttttcattgtttttgtagaatagtcatattatcctttcaaaaagaataataatagcagtaataataaata 29920734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 108 - 240
Target Start/End: Original strand, 6850145 - 6850281
Alignment:
Q  108 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 207  Q
    |||||| ||||||| ||| |||||| ||||||||| |||||| || ||| |||||||| | |||||||| ||||  ||| ||||||||||||| ||||||    
T  6850145 ggttccttataaaatgaacccatgagaatattggtccatgatggatcaattttttcaacggttagattagatgagccccaaaattttatcatgatctata 6850244  T
Q  208 aa----cactctaacccatcttctcttataattttat 240  Q
    ||    || |||||||||||||| ||||| |||||||    
T  6850245 aacattcaatctaacccatcttcccttatcattttat 6850281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 381 - 446
Target Start/End: Original strand, 6850642 - 6850707
Alignment:
Q  381 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 446  Q
    |||||||||| |||||| |||| ||||||||||| |||||| |||||| |||||||||||||||||    
T  6850642 cattgtttttttagaatagtcatattatcctttccaaaagactaataacagcagtaataataaata 6850707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 386 - 446
Target Start/End: Complemental strand, 3154881 - 3154821
Alignment:
Q  386 tttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 446  Q
    ||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  3154881 tttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaata 3154821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 37285479 - 37285560
Alignment:
Q  132 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 212  Q
    ||||||||||| |||||| |||||| ||||   || ||||||| |||||||||| | |||||||||||||||||||||||||    
T  37285479 aaaatattggtccatgatggaccaatttttggtatcattagatcatatgaatccaccaaattttatcatggtctataaacac 37285560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 38863434 - 38863533
Alignment:
Q  114 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 212  Q
    |||||||| ||| | || |||||||||||  ||||| |||||| |||||  |  ||||||| |||||||||| | |||||||||||||||||||||||||    
T  38863434 gtataaaatgaacctataaaaatattggtctatgatggaccaattttttgtaccattagatcatatgaatccaccaaattttatcatggtctataaacac 38863533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 305
Target Start/End: Complemental strand, 3155310 - 3155195
Alignment:
Q  192 tttatcatggtctataaacactc----taacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatat 287  Q
    ||||||||| |||||||||||||    |||||||||||| ||||| |||||||         ||||||| | ||||| |||||||| |||||||||||||    
T  3155310 tttatcatgatctataaacactcaatctaacccatcttcccttatcattttat--aaaaaattcatttttatcctttataattattttaatttaaaatat 3155213  T
Q  288 tacatatttttacggtaa 305  Q
    |||||||| ||| |||||    
T  3155212 tacatattgttatggtaa 3155195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 26733471 - 26733425
Alignment:
Q  168 attagattatatgaatcc-ctaaattttatcatggtctataaacact 213  Q
    ||||||||||||||| || | ||||||||||||||||||||||||||    
T  26733471 attagattatatgaacccaccaaattttatcatggtctataaacact 26733425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 108 - 305
Target Start/End: Complemental strand, 37385932 - 37385729
Alignment:
Q  108 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 207  Q
    |||||||||||||| |||| |||| ||||||||||  |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37385932 ggttccgtataaaatgaattcatggaaatattggtctatgatagaccaattttttcaatgattagattatatgaacccctaaattttatcatggtctata 37385833  T
Q  208 aacactctaacccatcttctcttataattttat------ttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacg 301  Q
    ||||||||||||||||||| |||||||| ||||               ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37385832 aacactctaacccatcttcccttataatattataaaaaaaaaaaaaaatcattttcaccctttataattattataatttaaaatattacatatttttacg 37385733  T
Q  302 gtaa 305  Q
    ||||    
T  37385732 gtaa 37385729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 107 - 305
Target Start/End: Complemental strand, 42478318 - 42478121
Alignment:
Q  107 aggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctat 206  Q
    ||||||||||||||| ||| |||||||||||||| |||||||| || ||| |||||||||||||||||||||| || || ||||||||||||||||||||    
T  42478318 aggttccgtataaaatgaacccatgaaaatattgattcatgatggatcaattttttcaatgattagattatataaacccttaaattttatcatggtctat 42478219  T
Q  207 aaacactctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 305  Q
    | ||||||||| |||||||| |||||||||||| |        ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  42478218 acacactctaatccatcttcccttataatttta-taaaaaaaatcattttcaccctttataattatgataatttaaaatattacatatttttacggtaa 42478121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 108 - 305
Target Start/End: Original strand, 31416518 - 31416717
Alignment:
Q  108 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 207  Q
    |||||| ||||||| ||| |||||| ||||||||| |||||| |||||| ||||| || | |||||||| |||||  || ||||||||||||| ||||||    
T  31416518 ggttccttataaaatgaacccatgagaatattggtccatgatggaccaatttttttaacggttagattacatgaactccaaaattttatcatgatctata 31416617  T
Q  208 aacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggt 303  Q
    |||||    |||||||||||||| ||||| ||||||  |       ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| |||    
T  31416618 aacactcaatctaacccatcttcccttatcatttta--taaaaaattcatttttaccctttataattattttaatttaaaatattacatattgttatggt 31416715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 116 - 305
Target Start/End: Complemental strand, 48513556 - 48513365
Alignment:
Q  116 ataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacac--- 212  Q
    |||||| ||| |||||| ||||||||| |||||| |||||| |||||||| | |||||||| ||||| ||| ||||||||||||| |||||||||||       
T  48513556 ataaaatgaacccatgagaatattggtccatgatggaccaattttttcaacggttagattagatgaaccccaaaattttatcatgatctataaacactca 48513457  T
Q  213 -tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 305  Q
     |||||||||||||| ||||| ||||||  |       ||||||| ||||||| |||||||| | ||||||||||||||||||| ||| |||||    
T  48513456 atctaacccatcttcccttatcatttta--taaaaaattcatttttaccctttataattattttcatttaaaatattacatattgttatggtaa 48513365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 107 - 305
Target Start/End: Complemental strand, 29820348 - 29820148
Alignment:
Q  107 aggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctat 206  Q
    ||||||| | ||||| ||| |||||| |||||||||| ||||| |||||| |||||||| | ||| |||| ||||| ||| ||||||||||||| |||||    
T  29820348 aggttccttgtaaaatgaacccatgagaatattggtttatgatggaccaattttttcaacggttaaattagatgaaccccaaaattttatcatgatctat 29820249  T
Q  207 aaacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacgg 302  Q
    ||||||    ||||||||||||||  |||| ||||||  |       ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| ||    
T  29820248 aaacactcaatctaacccatcttcctttatcatttta--taaaaaattcatttttaccctttataattattttaatttaaaatattacatattgttatgg 29820151  T
Q  303 taa 305  Q
    |||    
T  29820150 taa 29820148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 117 - 295
Target Start/End: Original strand, 52488655 - 52488836
Alignment:
Q  117 taaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacactc-- 214  Q
    ||||| ||||| |||| |||||||||  | ||| |||||| |||||||| | |||||||| ||||| ||| ||||||||||||| |||||||||||||      
T  52488655 taaaatgaatctatgagaatattggtctaagatggaccaattttttcaacggttagattagatgaaccccaaaattttatcatgatctataaacactcaa 52488754  T
Q  215 --taacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatt 295  Q
      |||||||||||| ||||| |||||| |        ||||||| ||||||| |||||||| |||||||||||||||||||||    
T  52488755 tttaacccatcttcccttatcatttta-taaaaaaaatcatttttaccctttataattattttaatttaaaatattacatatt 52488836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 383 - 446
Target Start/End: Complemental strand, 42477854 - 42477791
Alignment:
Q  383 ttgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 446  Q
    ||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||    
T  42477854 ttgtttttgtagaatagtcatattatcctttcaaaaataataataatagcagtaataataaata 42477791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 110 - 305
Target Start/End: Original strand, 48473418 - 48473615
Alignment:
Q  110 ttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaa 209  Q
    |||| ||||||| ||| |||| | |||||||||| | ||| || ||| |||||||| | |||||||| ||||| ||| ||||||||||||| ||||| ||    
T  48473418 ttccttataaaatgaaaccataagaatattggtttacgatggatcaattttttcaacggttagattagatgaaccccaaaattttatcatgatctatgaa 48473517  T
Q  210 ----cactctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 305  Q
        || |||||||||||||| ||||| ||||||  |       ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| |||||    
T  48473518 tactcaatctaacccatcttcccttattatttta--taaaaaattcatttttaccctttataattattttaatttaaaatattacatattgttatggtaa 48473615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 357 - 446
Target Start/End: Complemental strand, 37385473 - 37385383
Alignment:
Q  357 cggttatcaattatttannnnnnncattgtttttgtagaatcgtcaaattatcctttca-aaaagaataataatagcagtaataataaata 446  Q
    |||||||||||||||||       |||||||||||||||||||||| |||||||||||| |||| |||||||||| |||||||||||||||    
T  37385473 cggttatcaattatttatttttttcattgtttttgtagaatcgtcatattatcctttcaaaaaaaaataataataacagtaataataaata 37385383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 107 - 305
Target Start/End: Complemental strand, 53410013 - 53409817
Alignment:
Q  107 aggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctat 206  Q
    ||||||| ||||||| ||| |||||| ||||||| || | ||| || ||| |||||||| | |||||||| ||||||||| ||||||||||||| |||||    
T  53410013 aggttccttataaaatgaacccatgagaatattgatttaagatggatcaattttttcaacggttagattaaatgaatcccaaaattttatcatgatctat 53409914  T
Q  207 aaacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacgg 302  Q
    ||||||    ||||||||||| | |||    ||||||  |       ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| ||    
T  53409913 aaacactcaatctaacccatcctttct----atttta--taaaaaattcatttttaccctttataattattttaatttaaaatattacatattgttatgg 53409820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 381 - 446
Target Start/End: Original strand, 31417009 - 31417074
Alignment:
Q  381 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 446  Q
    |||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  31417009 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaata 31417074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 381 - 446
Target Start/End: Original strand, 52489087 - 52489152
Alignment:
Q  381 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 446  Q
    |||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  52489087 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaata 52489152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 381 - 446
Target Start/End: Complemental strand, 53409519 - 53409454
Alignment:
Q  381 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 446  Q
    |||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  53409519 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaata 53409454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 33748335 - 33748237
Alignment:
Q  114 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccct-aaattttatcatggtctataaaca 211  Q
    |||||||| ||| | || |||||||||||||||||| |||||| |||||  |  ||||||| |||||||||| | ||||||||||||||||||||||||    
T  33748335 gtataaaatgaacctataaaaatattggttcatgatggaccaattttttgtaccattagatcatatgaatccatcaaattttatcatggtctataaaca 33748237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 381 - 446
Target Start/End: Complemental strand, 48513060 - 48512995
Alignment:
Q  381 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 446  Q
    |||||||||| |||||| |||| ||| ||||||| |||||| ||||||||||||||||||||||||    
T  48513060 cattgtttttttagaatagtcatattttcctttccaaaagactaataatagcagtaataataaata 48512995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 382 - 440
Target Start/End: Complemental strand, 29819884 - 29819826
Alignment:
Q  382 attgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataa 440  Q
    ||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||    
T  29819884 attgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataa 29819826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 28476540 - 28476504
Alignment:
Q  71 ttgaagttgtctacgactacttttgcatctagatcaa 107  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  28476540 ttgaagttgtctacgacaacttttgcatctagctcaa 28476504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 209
Target Start/End: Original strand, 54453868 - 54453964
Alignment:
Q  114 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccct-aaattttatcatggtctataaa 209  Q
    |||||||| ||| | || |||||||||||| ||||| || ||| |||||  |  ||||||| ||||||| || | ||||||||||||||||||||||    
T  54453868 gtataaaatgaacctataaaaatattggtttatgatggatcaattttttgtaccattagatcatatgaacccatcaaattttatcatggtctataaa 54453964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 108 - 305
Target Start/End: Original strand, 27335447 - 27335646
Alignment:
Q  108 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 207  Q
    |||||| ||||||| ||| |||||| ||||||||| |||||| |||||| |||||||||  |||||||| ||||| ||| ||||||||||||| ||||||    
T  27335447 ggttccttataaaatgaacccatgagaatattggtccatgatggaccaattttttcaatagttagattagatgaaccccaaaattttatcatgatctata 27335546  T
Q  208 aacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggt 303  Q
    |||||    |||||||||||||| ||||| ||||||  |       ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| |||    
T  27335547 aacactcaatctaacccatcttcccttatcatttta--taaaaaaatcatttttaccctttataattattttaatttaaaatattacatattgttatggt 27335644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 108 - 305
Target Start/End: Original strand, 27396187 - 27396386
Alignment:
Q  108 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 207  Q
    |||||| ||||||| ||| |||||| ||||||||| |||||| |||||| |||||||||  |||||||| ||||| ||| ||||||||||||| ||||||    
T  27396187 ggttccttataaaatgaacccatgagaatattggtccatgatggaccaattttttcaatagttagattagatgaaccccaaaattttatcatgatctata 27396286  T
Q  208 aacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggt 303  Q
    |||||    |||||||||||||| ||||| ||||||  |       ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| |||    
T  27396287 aacactcaatctaacccatcttcccttatcatttta--taaaaaaatcatttttaccctttataattattttaatttaaaatattacatattgttatggt 27396384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 18058415 - 18058496
Alignment:
Q  132 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 212  Q
    ||||||||||| |||||| |||||| |||||  |  ||||||| |||||||||| | |||||||||||||||||||||||||    
T  18058415 aaaatattggtccatgatggaccaattttttgtaccattagatcatatgaatccaccaaattttatcatggtctataaacac 18058496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 27335955 - 27336011
Alignment:
Q  381 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaa 437  Q
    |||||||||| |||||| |||| ||||||||||| |||||| |||||||||||||||    
T  27335955 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaa 27336011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 27396695 - 27396751
Alignment:
Q  381 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaa 437  Q
    |||||||||| |||||| |||| ||||||||||| |||||| |||||||||||||||    
T  27396695 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaa 27396751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 7695290 - 7695185
Alignment:
Q  108 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctat 206  Q
    ||||| |||||||| ||| |||| || ||||||||  ||||| |||||   ||||||||| |||||| |||| || || |||||| ||||||||||| ||    
T  7695290 ggttctgtataaaatgaacccatcaagatattggtcgatgatggaccagtcttttcaatgcttagatcatatcaacccactaaatcttatcatggtccat 7695191  T
Q  207 aaacac 212  Q
    ||||||    
T  7695190 aaacac 7695185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 107 - 305
Target Start/End: Original strand, 9232818 - 9233020
Alignment:
Q  107 aggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctat 206  Q
    ||||||| ||||||| ||| |||||| ||||||| | |||||| || ||| |||||||| | |||||||| ||||| ||| ||||||||||||| |||||    
T  9232818 aggttccttataaaatgaacccatgagaatattgatccatgatggatcaattttttcaacggttagattagatgaaccccaaaattttatcatgatctat 9232917  T
Q  207 aaacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacgg 302  Q
    ||||||    |||||||||||||| ||||| |||||||         ||||||| ||||||| |||||||| ||||||||||||||||||||| ||| ||    
T  9232918 aaacactcaatctaacccatcttcccttatcattttataaaaaaaattcatttttaccctttataattattttaatttaaaatattacatattgttatgg 9233017  T
Q  303 taa 305  Q
    |||    
T  9233018 taa 9233020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 381 - 446
Target Start/End: Original strand, 9233329 - 9233394
Alignment:
Q  381 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 446  Q
    |||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  9233329 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaata 9233394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 32039132 - 32039052
Alignment:
Q  110 ttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaa 190  Q
    |||| ||||||| ||| ||||||||||||||||| ||||| || ||| |||||||||| ||||||||||||||| ||||||    
T  32039132 ttccttataaaatgaacccatgaaaatattggtttatgatggatcaattttttcaatggttagattatatgaattcctaaa 32039052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 30152502 - 30152403
Alignment:
Q  114 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 212  Q
    |||||||| ||| |||| || |||||||| |||||| ||||||  ||||||||| ||||||||||| || || |||||| ||| ||||||| ||||||||    
T  30152502 gtataaaatgaacccatcaagatattggtccatgatggaccaatcttttcaatgtttagattatatcaacccactaaatcttaccatggtccataaacac 30152403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 31664918 - 31664819
Alignment:
Q  114 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaa-tccctaaattttatcatggtctataaacac 212  Q
    |||||||| ||| | || ||||||||||| |||||| || ||| |||||  |  ||||||| ||||||| || | |||||||||||||||||||||||||    
T  31664918 gtataaaatgaacctataaaaatattggtccatgatggaacaattttttgtaccattagatcatatgaactcaccaaattttatcatggtctataaacac 31664819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 35176397 - 35176442
Alignment:
Q  168 attagattatatgaatcc-ctaaattttatcatggtctataaacac 212  Q
    |||||||||||||||||| | |||||||||||||||| ||||||||    
T  35176397 attagattatatgaatccaccaaattttatcatggtccataaacac 35176442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 108 - 305
Target Start/End: Complemental strand, 26251381 - 26251182
Alignment:
Q  108 ggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctata 207  Q
    |||||| ||||||| ||| |||||| ||||||||| |||||| || ||| |||||||| | |||||||| ||||| ||| ||||||||||||| ||||||    
T  26251381 ggttccttataaaatgaacccatgagaatattggtccatgatggatcaattttttcaacggttagattaaatgaaccccaaaattttatcatgatctata 26251282  T
Q  208 aacac----tctaacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggt 303  Q
    |||||    |||||||||||||| ||||| ||||||  |       ||||||| ||| ||| |||||||| ||||||||||||||||||||| ||| |||    
T  26251281 aacactcaatctaacccatcttcccttatcatttta--taaaaaattcatttttaccttttataattattttaatttaaaatattacatattgttatggt 26251184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 381 - 444
Target Start/End: Original strand, 49015938 - 49016001
Alignment:
Q  381 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaa 444  Q
    |||||||||| |||||| |||| ||||||||||| |||||| ||||||||||||||||||||||    
T  49015938 cattgtttttttagaatagtcatattatcctttccaaaagactaataatagcagtaataataaa 49016001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 7944225 - 7944323
Alignment:
Q  114 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaaca 211  Q
    |||||||| ||| | || |||||||||||||||||| |||||| |||||  |  ||||||| |||||||||| | ||||||||||||||||||||||||    
T  7944225 gtataaaatgaacctataaaaatattggttcatgatggaccaattttttgtaccattagatcatatgaatccaccaaattttatcatggtctataaaca 7944323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 109 - 213
Target Start/End: Original strand, 49015465 - 49015569
Alignment:
Q  109 gttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataa 208  Q
    ||||| ||||||| |||||  ||| |||||||||  ||||| |||||| |||||||| | |||||||| ||||| | | ||||||||||||| |||||||    
T  49015465 gttccttataaaatgaatctctgagaatattggtctatgatggaccaattttttcaacggttagattaaatgaacctcaaaattttatcatgatctataa 49015564  T
Q  209 acact 213  Q
    |||||    
T  49015565 acact 49015569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 19647627 - 19647726
Alignment:
Q  114 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 212  Q
    |||||||| ||| | || ||||||||||| |||||| ||||||||||||  |  ||||||| ||||||| || | |||||||||||||||||||||||||    
T  19647627 gtataaaatgaacctataaaaatattggtccatgatggaccaaatttttgtaccattagatcatatgaacccaccaaattttatcatggtctataaacac 19647726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 446
Target Start/End: Complemental strand, 26250905 - 26250840
Alignment:
Q  381 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 446  Q
    |||||||||| |||||| |||| ||||||||||| |||||| |||||||| ||| |||||||||||    
T  26250905 cattgtttttttagaatagtcatattatcctttccaaaagactaataataacagcaataataaata 26250840  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 49015592 - 49015647
Alignment:
Q  250 tcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 305  Q
    ||||||| | ||||| |||||||| ||||||||||||||||||||| ||| |||||    
T  49015592 tcatttttatcctttataattattttaatttaaaatattacatattgttatggtaa 49015647  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 305
Target Start/End: Complemental strand, 24741269 - 24741233
Alignment:
Q  269 ttattataatttaaaatattacatatttttacggtaa 305  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  24741269 ttattataatttaaaatattacatattgttatggtaa 24741233  T

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Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 115 - 305
Target Start/End: Original strand, 34024743 - 34024936
Alignment:
Q  115 tataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacactc 214  Q
    ||||||| ||| ||||||||||||| ||  || || ||||||  ||||||||  ||||||||||||||||||||||| |||||||| ||||||||||||     
T  34024743 tataaaatgaacccatgaaaatatttgtctattatggaccaatattttcaatagttagattatatgaatccctaaatcttatcatgatctataaacacta 34024842  T
Q  215 ----taacccatcttctcttataattttatttnnnnnnntcattttcaccctttgtaattattataatttaaaatattacatatttttacggtaa 305  Q
        ||||||||||| |||||| |||||| |        ||||||| ||||||| ||||||||||||||||||||| |||||||| |||| ||||    
T  34024843 aatttaacccatcttttcttatcatttta-taaaaaaaatcatttttaccctttataattattataatttaaaatactacatattattactgtaa 34024936  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 14360106 - 14360205
Alignment:
Q  114 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacact 213  Q
    |||||||| ||| |||||||||||||||| ||| ||||||||| |||||||| | |||||||||||||| | |||||| ||| |||| ||||||||||||    
T  14360106 gtataaaatgaacccatgaaaatattggtccatcatagaccaattttttcaacggttagattatatgaaccactaaatcttaccatgatctataaacact 14360205  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 23761098 - 23761149
Alignment:
Q  250 tcattttcaccctttgtaattattataatttaaaatattacatatttttacg 301  Q
    ||||||| | ||||| |||||||||||||||||||||||||||||| |||||    
T  23761098 tcatttttagcctttataattattataatttaaaatattacatattgttacg 23761149  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 7000531 - 7000447
Alignment:
Q  129 atgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatc-cctaaattttatcatggtctataaacac 212  Q
    ||||||||||||||  ||||| |||||| |||||  |  |||||||||||||||||  | ||||||||| |||||||||||||||    
T  7000531 atgaaaatattggtctatgatggaccaattttttgtaccattagattatatgaatctaccaaattttattatggtctataaacac 7000447  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 446
Target Start/End: Original strand, 34025237 - 34025279
Alignment:
Q  404 attatcctttcaaaaagaataataatagcagtaataataaata 446  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||    
T  34025237 attatactttccaaaagaatagtaatagcagtaataataaata 34025279  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 42481219 - 42481296
Alignment:
Q  132 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaa 209  Q
    ||||||||||| |||||| |||||| ||||| |   ||||||| |||||||||| | ||||||||||||||||||||||    
T  42481219 aaaatattggtccatgatggaccaatttttttacc-attagatcatatgaatccaccaaattttatcatggtctataaa 42481296  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 107 - 214
Target Start/End: Original strand, 42010683 - 42010790
Alignment:
Q  107 aggttccgtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctat 206  Q
    ||||||| ||||||| ||| |||||| ||||||||| |||||| |||||| |||||||| | ||||| || ||||| ||| ||||||||||||| |||||    
T  42010683 aggttccttataaaatgaacccatgagaatattggtccatgatggaccaattttttcaacggttagaatagatgaaccccaaaattttatcatgatctat 42010782  T
Q  207 aaacactc 214  Q
    ||||||||    
T  42010783 aaacactc 42010790  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 446
Target Start/End: Original strand, 42011124 - 42011188
Alignment:
Q  382 attgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 446  Q
    ||||||||| || ||| |||| ||||||||||| |||||| |||||||||||| |||||||||||    
T  42011124 attgtttttttaaaatagtcatattatcctttccaaaagactaataatagcagcaataataaata 42011188  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 32772461 - 32772349
Alignment:
Q  132 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatccctaaattttatcatggtctataaacac----tctaacccatcttct 227  Q
    |||||||||||  ||||| |||||| |||||||| | |||||||| ||||| ||| ||||||||||||| |||||||||||    ||||||||||||||     
T  32772461 aaaatattggtctatgatggaccaattttttcaacggttagattagatgaaccccaaaattttatcatgatctataaacactcaatctaacccatcttcc 32772362  T
Q  228 cttataattttat 240  Q
    ||||| |||||||    
T  32772361 cttatcattttat 32772349  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 381 - 446
Target Start/End: Complemental strand, 32771655 - 32771590
Alignment:
Q  381 cattgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 446  Q
    |||||||||| |||||| |||| ||| ||||||| |||||| ||||||||||||||||||||||||    
T  32771655 cattgtttttttagaatagtcatattttcctttccaaaagactaataatagcagtaataataaata 32771590  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 14136501 - 14136402
Alignment:
Q  114 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 212  Q
    |||||||| ||| | || |||||||||||  ||||| |||||| |||||  |  ||||||| ||||||| || | |||||||||||||||||||||||||    
T  14136501 gtataaaatgaacctataaaaatattggtctatgatggaccaattttttgtaccattagatcatatgaacccaccaaattttatcatggtctataaacac 14136402  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 11782263 - 11782165
Alignment:
Q  114 gtataaaacgaatccatgaaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaaca 211  Q
    |||||||| ||| | || ||||||||||| |||||| |||||| |||||  |   |||||| ||||||| || | ||||||||||||||||||||||||    
T  11782263 gtataaaatgaacctataaaaatattggtccatgatggaccaattttttgtaccgttagatcatatgaacccaccaaattttatcatggtctataaaca 11782165  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 1463816 - 1463735
Alignment:
Q  132 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaatcc-ctaaattttatcatggtctataaacac 212  Q
    ||||||||||| |||||| |||||| ||||   || ||||||| ||||||| || | ||||||||||||| |||||||||||    
T  1463816 aaaatattggtccatgatggaccaatttttgatatcattagatcatatgaacccaccaaattttatcatgatctataaacac 1463735  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 40323474 - 40323394
Alignment:
Q  132 aaaatattggttcatgatagaccaaatttttcaatgattagattatatgaa-tccctaaattttatcatggtctataaaca 211  Q
    |||||||||||  ||||| |||||| |||||  |  ||||||||||||||| || | |||| |||||||||||||||||||    
T  40323474 aaaatattggtctatgatggaccaattttttgtaccattagattatatgaactcaccaaatcttatcatggtctataaaca 40323394  T

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Target: scaffold0006 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 446
Target Start/End: Complemental strand, 282595 - 282531
Alignment:
Q  382 attgtttttgtagaatcgtcaaattatcctttcaaaaagaataataatagcagtaataataaata 446  Q
    ||||||||  |||||| |||| ||||||||||  |||||| ||||||||||||||||||||||||    
T  282595 attgttttcttagaatagtcatattatcctttttaaaagactaataatagcagtaataataaata 282531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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