View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2837_high_12 (Length: 360)

Name: NF2837_high_12
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2837_high_12
NF2837_high_12
[»] chr7 (40 HSPs)
chr7 (16-354)||(4957975-4958318)
chr7 (16-149)||(19987106-19987239)
chr7 (34-159)||(38223912-38224037)
chr7 (28-143)||(48767213-48767328)
chr7 (16-119)||(47841466-47841569)
chr7 (16-107)||(36656652-36656743)
chr7 (16-121)||(32724206-32724314)
chr7 (16-136)||(2008549-2008669)
chr7 (16-100)||(44441587-44441671)
chr7 (21-112)||(25307532-25307623)
chr7 (16-119)||(43302162-43302265)
chr7 (14-100)||(37698484-37698570)
chr7 (16-100)||(23156284-23156368)
chr7 (52-143)||(19594002-19594093)
chr7 (53-143)||(19753042-19753132)
chr7 (19-100)||(31330390-31330471)
chr7 (19-143)||(36482053-36482177)
chr7 (16-100)||(36901081-36901165)
chr7 (16-96)||(39853769-39853849)
chr7 (16-101)||(13057864-13057950)
chr7 (62-127)||(2888113-2888178)
chr7 (16-97)||(29914447-29914528)
chr7 (16-140)||(5513891-5514014)
chr7 (32-100)||(44441347-44441415)
chr7 (48-143)||(25324577-25324671)
chr7 (34-100)||(46748089-46748155)
chr7 (28-101)||(46282186-46282259)
chr7 (63-143)||(23802224-23802303)
chr7 (16-100)||(36657932-36658016)
chr7 (48-101)||(4874942-4874995)
chr7 (16-101)||(6068092-6068177)
chr7 (62-141)||(43095466-43095543)
chr7 (62-104)||(7751649-7751691)
chr7 (39-101)||(27334367-27334429)
chr7 (32-101)||(15018374-15018443)
chr7 (48-101)||(36039050-36039103)
chr7 (19-69)||(7751858-7751908)
chr7 (86-143)||(30859528-30859585)
chr7 (32-85)||(41172570-41172623)
chr7 (18-95)||(48615334-48615410)
[»] chr4 (33 HSPs)
chr4 (16-149)||(10180658-10180790)
chr4 (19-143)||(26698962-26699083)
chr4 (19-106)||(30865881-30865968)
chr4 (16-102)||(39055156-39055242)
chr4 (19-159)||(35382410-35382550)
chr4 (16-161)||(53096652-53096799)
chr4 (16-92)||(12447422-12447498)
chr4 (16-100)||(23359098-23359182)
chr4 (16-100)||(35332027-35332111)
chr4 (19-141)||(31262461-31262586)
chr4 (16-101)||(2396293-2396378)
chr4 (16-100)||(822423-822507)
chr4 (16-100)||(49211023-49211107)
chr4 (16-158)||(11346918-11347060)
chr4 (14-97)||(40918023-40918107)
chr4 (16-100)||(52199799-52199883)
chr4 (18-97)||(35309031-35309110)
chr4 (16-91)||(51655132-51655207)
chr4 (48-122)||(2574125-2574199)
chr4 (62-143)||(5036049-5036130)
chr4 (20-100)||(39629241-39629321)
chr4 (29-100)||(43968777-43968848)
chr4 (17-144)||(54018494-54018621)
chr4 (20-90)||(22628474-22628544)
chr4 (17-159)||(44500430-44500572)
chr4 (48-112)||(53779429-53779493)
chr4 (29-100)||(8824960-8825030)
chr4 (48-119)||(24030602-24030673)
chr4 (48-122)||(16461109-16461183)
chr4 (16-141)||(25435948-25436072)
chr4 (23-100)||(41916038-41916115)
chr4 (48-143)||(45832521-45832616)
chr4 (48-139)||(45803942-45804034)
[»] chr3 (23 HSPs)
chr3 (16-143)||(46048836-46048963)
chr3 (16-120)||(41211960-41212063)
chr3 (30-119)||(47075605-47075694)
chr3 (21-84)||(13768600-13768663)
chr3 (19-122)||(26085041-26085144)
chr3 (16-119)||(36902367-36902470)
chr3 (18-84)||(13755196-13755262)
chr3 (28-106)||(54422715-54422792)
chr3 (19-143)||(52995699-52995823)
chr3 (19-141)||(3993527-3993648)
chr3 (32-100)||(30595141-30595209)
chr3 (16-100)||(46006121-46006205)
chr3 (16-119)||(33831984-33832087)
chr3 (49-100)||(55272804-55272855)
chr3 (19-141)||(4009839-4009960)
chr3 (43-117)||(19900202-19900276)
chr3 (56-101)||(36619161-36619206)
chr3 (48-141)||(3973472-3973564)
chr3 (48-141)||(3996313-3996405)
chr3 (16-72)||(35539614-35539670)
chr3 (62-106)||(41211725-41211769)
chr3 (16-100)||(36277805-36277893)
chr3 (62-119)||(35539540-35539597)
[»] chr1 (34 HSPs)
chr1 (28-143)||(9505539-9505654)
chr1 (16-170)||(43675241-43675395)
chr1 (16-170)||(49003408-49003561)
chr1 (16-101)||(52353832-52353917)
chr1 (16-100)||(13984034-13984118)
chr1 (16-100)||(43822772-43822856)
chr1 (43-121)||(11241550-11241628)
chr1 (16-161)||(44665360-44665505)
chr1 (14-159)||(47783695-47783840)
chr1 (16-100)||(42831641-42831725)
chr1 (16-122)||(38601007-38601111)
chr1 (22-136)||(51263150-51263264)
chr1 (19-100)||(11569964-11570045)
chr1 (16-159)||(40287031-40287172)
chr1 (21-101)||(51061670-51061750)
chr1 (29-100)||(32851816-32851887)
chr1 (29-143)||(27544325-27544439)
chr1 (48-145)||(641832-641928)
chr1 (19-100)||(11566926-11567007)
chr1 (16-101)||(23333755-23333840)
chr1 (43-100)||(36297979-36298036)
chr1 (16-100)||(25813733-25813816)
chr1 (16-100)||(33041440-33041524)
chr1 (39-139)||(28278063-28278163)
chr1 (16-146)||(11120503-11120632)
chr1 (61-119)||(47364308-47364367)
chr1 (48-170)||(31133168-31133288)
chr1 (14-100)||(36166888-36166974)
chr1 (19-89)||(43506265-43506335)
chr1 (48-97)||(11449221-11449269)
chr1 (19-102)||(38118914-38118998)
chr1 (29-99)||(32451814-32451885)
chr1 (20-102)||(51504581-51504664)
chr1 (52-100)||(38902003-38902051)
[»] chr5 (32 HSPs)
chr5 (16-142)||(41520906-41521031)
chr5 (19-121)||(3558747-3558849)
chr5 (16-101)||(42951776-42951861)
chr5 (14-100)||(2375544-2375630)
chr5 (16-100)||(26675523-26675607)
chr5 (16-100)||(26947131-26947215)
chr5 (44-140)||(39145131-39145226)
chr5 (16-159)||(15468166-15468309)
chr5 (17-100)||(12593121-12593205)
chr5 (16-100)||(13420752-13420836)
chr5 (14-100)||(7293042-7293128)
chr5 (16-98)||(35463272-35463354)
chr5 (48-101)||(6761444-6761497)
chr5 (32-100)||(13486580-13486648)
chr5 (16-100)||(18396562-18396646)
chr5 (48-122)||(1666848-1666922)
chr5 (16-121)||(11200711-11200816)
chr5 (48-97)||(20420168-20420217)
chr5 (54-118)||(22579651-22579715)
chr5 (16-71)||(33133291-33133346)
chr5 (63-142)||(41357695-41357773)
chr5 (14-100)||(1309804-1309890)
chr5 (16-101)||(1269701-1269785)
chr5 (16-89)||(29558344-29558417)
chr5 (16-102)||(837791-837875)
chr5 (34-97)||(8228765-8228828)
chr5 (22-101)||(35982139-35982218)
chr5 (18-100)||(28998043-28998125)
chr5 (16-100)||(4432328-4432410)
chr5 (48-101)||(14642292-14642344)
chr5 (48-101)||(34382548-34382601)
chr5 (16-119)||(31111739-31111843)
[»] chr2 (33 HSPs)
chr2 (43-167)||(16341865-16341990)
chr2 (43-170)||(16117983-16118111)
chr2 (21-144)||(40999630-40999753)
chr2 (14-159)||(11921881-11922026)
chr2 (15-102)||(34234878-34234965)
chr2 (16-145)||(37347884-37348011)
chr2 (17-158)||(41068835-41068974)
chr2 (43-159)||(4279887-4280002)
chr2 (16-149)||(36266927-36267054)
chr2 (29-100)||(36887626-36887697)
chr2 (16-102)||(65437-65523)
chr2 (16-100)||(44887284-44887368)
chr2 (34-121)||(13022786-13022873)
chr2 (40-100)||(45135758-45135818)
chr2 (51-141)||(6562897-6562986)
chr2 (30-101)||(34375045-34375115)
chr2 (16-143)||(5038665-5038793)
chr2 (16-141)||(26312428-26312551)
chr2 (16-101)||(14772969-14773053)
chr2 (17-101)||(6459074-6459158)
chr2 (48-99)||(26297112-26297163)
chr2 (43-122)||(32887673-32887752)
chr2 (19-97)||(3668837-3668915)
chr2 (17-79)||(18970013-18970075)
chr2 (16-121)||(28857050-28857158)
chr2 (48-122)||(34820955-34821029)
chr2 (41-140)||(7868349-7868448)
chr2 (16-100)||(9583138-9583222)
chr2 (50-101)||(3949058-3949109)
chr2 (48-90)||(6710947-6710989)
chr2 (52-142)||(37648551-37648640)
chr2 (48-102)||(44583440-44583494)
chr2 (48-101)||(39368729-39368782)
[»] chr8 (46 HSPs)
chr8 (16-168)||(38937721-38937872)
chr8 (16-143)||(28557199-28557326)
chr8 (16-141)||(28540626-28540751)
chr8 (19-136)||(11777714-11777831)
chr8 (16-160)||(9134087-9134231)
chr8 (16-161)||(12733979-12734122)
chr8 (16-100)||(2603116-2603200)
chr8 (22-100)||(6519092-6519170)
chr8 (16-142)||(8673643-8673769)
chr8 (16-121)||(13629081-13629186)
chr8 (16-121)||(13729493-13729598)
chr8 (16-100)||(18806612-18806696)
chr8 (51-143)||(28567760-28567852)
chr8 (51-143)||(28575353-28575445)
chr8 (16-106)||(35973430-35973520)
chr8 (16-142)||(1155180-1155310)
chr8 (16-100)||(5535837-5535921)
chr8 (16-100)||(23036790-23036874)
chr8 (51-159)||(23982182-23982289)
chr8 (16-100)||(31226513-31226597)
chr8 (16-145)||(9133754-9133882)
chr8 (28-100)||(9604558-9604630)
chr8 (51-143)||(28562262-28562354)
chr8 (22-101)||(3628224-3628303)
chr8 (14-97)||(31128598-31128681)
chr8 (16-106)||(9790087-9790177)
chr8 (16-89)||(5978560-5978633)
chr8 (41-142)||(10954141-10954242)
chr8 (41-142)||(10962146-10962247)
chr8 (16-145)||(14426164-14426293)
chr8 (16-100)||(37673805-37673889)
chr8 (16-98)||(4797277-4797360)
chr8 (16-99)||(6427146-6427229)
chr8 (48-101)||(5569223-5569276)
chr8 (16-100)||(5139719-5139803)
chr8 (16-100)||(16531613-16531697)
chr8 (62-142)||(32898573-32898652)
chr8 (16-100)||(35468329-35468413)
chr8 (16-79)||(30714093-30714156)
chr8 (16-79)||(30721870-30721933)
chr8 (48-98)||(1737804-1737854)
chr8 (28-90)||(7288228-7288290)
chr8 (49-101)||(36316757-36316808)
chr8 (88-142)||(7287943-7287997)
chr8 (56-101)||(40451401-40451446)
chr8 (48-100)||(30462547-30462599)
[»] chr6 (15 HSPs)
chr6 (15-146)||(7693966-7694097)
chr6 (19-122)||(387698-387802)
chr6 (16-100)||(5002414-5002498)
chr6 (16-100)||(32977416-32977500)
chr6 (53-122)||(9491836-9491905)
chr6 (16-100)||(32658469-32658553)
chr6 (16-101)||(18804220-18804305)
chr6 (16-100)||(22281811-22281895)
chr6 (32-100)||(6988172-6988240)
chr6 (16-100)||(21940975-21941059)
chr6 (23-139)||(25099034-25099150)
chr6 (28-98)||(31103429-31103498)
chr6 (14-68)||(33755768-33755822)
chr6 (16-81)||(31743605-31743670)
chr6 (65-101)||(10078282-10078318)
[»] scaffold0040 (1 HSPs)
scaffold0040 (52-161)||(55854-55963)
[»] scaffold0991 (1 HSPs)
scaffold0991 (16-143)||(2927-3053)
[»] scaffold0712 (1 HSPs)
scaffold0712 (48-102)||(6136-6190)
[»] scaffold0709 (1 HSPs)
scaffold0709 (48-102)||(6154-6208)
[»] scaffold0092 (1 HSPs)
scaffold0092 (112-160)||(4968-5016)


Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 16 - 354
Target Start/End: Complemental strand, 4958318 - 4957975
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4958318 atctcacacaactttcttaaatgaaacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtggatcccac 4958219  T
Q  116 ttaagatagagggtcttaagtgagaccctgggtcctatgagacctccga-aaaattctttcc---aataacggtacatattaagtatcacatatcaaatg 211  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||  ||   |||||||||||||||||| ||||||||||||||||    
T  4958218 ttaagatggagggtcttaagtgagaccctgggtcctatgagacctccgaaaaaattctccccaataataacggtacatattaaatatcacatatcaaatg 4958119  T
Q  212 gttaagatctcacc-------atggtcttgactcatctataaattgaaagaaagattcatttgctactatgctatataacataatttcttttctccaaac 304  Q
    ||||||||||||||       ||| ||||||||| ||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||    
T  4958118 gttaagatctcaccattaaggatgatcttgactcgtctataaattgaaagaaagattcatttgctac------atataacataatttcttttctccaaac 4958025  T
Q  305 aaattgaaacacgtttgtttccatggatgaagaggcgaaggtcatacatc 354  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4958024 aaattgaaacacgtttgtttccatggatgaagaggtgaaggtcatacatc 4957975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 19987239 - 19987106
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    |||||||||||  |||||||||| |||| ||||||| |||||||| ||||||| ||||||||||| ||||||||||||||||||||| ||||  || |||    
T  19987239 atctcacacaaagttcttaaatgggacctacaaatcgactatcaataactttaaatcattacataacaattttttaatattaaaaagttgtgggtctcac 19987140  T
Q  116 ttaagatagagggtcttaagtgagaccctgggtc 149  Q
    ||||||| ||||||||||||||||||| ||||||    
T  19987139 ttaagattgagggtcttaagtgagaccttgggtc 19987106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 34 - 159
Target Start/End: Complemental strand, 38224037 - 38223912
Alignment:
Q  34 aaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtctta 133  Q
    ||||||||| || |||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||  ||||||||||||| ||| ||||||    
T  38224037 aaatgagactcaaaaatcaactatcaataacattatatcattacatataaattttttaatattaaaaaggtgtgggtcccacttaagattgagagtctta 38223938  T
Q  134 agtgagaccctgggtcctatgagacc 159  Q
    |||||||| ||||||| ||| |||||    
T  38223937 agtgagactctgggtcttataagacc 38223912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 28 - 143
Target Start/End: Original strand, 48767213 - 48767328
Alignment:
Q  28 tttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagg 127  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||| ||| ||||||||||| ||||||||| |||| | ||||||||||||| ||||    
T  48767213 tttcttaaatgagacccactaatcaactatcaataactttatatcattgcatttcaattttttattattaaaaaagtgttagtcccacttaagattgagg 48767312  T
Q  128 gtcttaagtgagaccc 143  Q
    |||||| |||||||||    
T  48767313 gtcttatgtgagaccc 48767328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 47841466 - 47841569
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    |||||||| ||  |||||||||||||| ||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||    
T  47841466 atctcacataaagttcttaaatgagactcacaaatcaactatcaataactttataccatcacatatcaattttttaatattaaaaaggtgtgagtcccac 47841565  T
Q  116 ttaa 119  Q
    ||||    
T  47841566 ttaa 47841569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 36656652 - 36656743
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtg 107  Q
    |||||| ||||  ||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  36656652 atctcatacaaagttcttaaatgagacccataaatcaactattaataactttatatcattacatatcaattttttaatattaaaaaggtgtg 36656743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 32724314 - 32724206
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaacta---tcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcc 112  Q
    |||||| |||| |||||||||||  |||||| ||| |||||   |||| ||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  32724314 atctcaaacaaatttcttaaatggaacccactaattaactagtatcaataactttatatcattacatatcaattttttaatattaaaaaggtgtgggtcc 32724215  T
Q  113 cacttaaga 121  Q
    |||||||||    
T  32724214 cacttaaga 32724206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 2008669 - 2008549
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    ||||||||||| |||||||||||  ||||   ||||||||||||| || |||||| |||||||| ||||||||||||||||||||| || ||  ||||||    
T  2008669 atctcacacaaatttcttaaatggaacccgttaatcaactatcaataattttataccattacatttcaattttttaatattaaaaaagtatgtgtcccac 2008570  T
Q  116 ttaagatagagggtcttaagt 136  Q
    ||||||| || ||||||||||    
T  2008569 ttaagattgaaggtcttaagt 2008549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 44441671 - 44441587
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||| || ||||||||||||||||||| ||||||||||||||||||  |||||||||||  ||||||||||||||||||||    
T  44441671 atctcacaaaaatttcttaaatgagacccactaatcaactatcaacaactggatatcattacacttcaattttttaatattaaaa 44441587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 25307532 - 25307623
Alignment:
Q  21 acacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcc 112  Q
    |||||| |||||||||||||| |||||||||||| ||||| ||  |||||||||||||| |||||||||||||||||||||| |||| ||||    
T  25307532 acacaaatttcttaaatgagatccacaaatcaacaatcaataaacttatatcattacatctcaattttttaatattaaaaagatgtggatcc 25307623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 43302162 - 43302265
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    ||||||||||   |||||||||| ||||||| ||||||||||||| ||||||||||||||| || ||||||||||||||||||||  ||||| ||||| |    
T  43302162 atctcacacataattcttaaatgggacccactaatcaactatcaataactttatatcattatatttcaattttttaatattaaaagagtgtggatcccgc 43302261  T
Q  116 ttaa 119  Q
    ||||    
T  43302262 ttaa 43302265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 37698570 - 37698484
Alignment:
Q  14 aaatctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||||  ||||||||||| |||||| ||| |||||||||||||||||||||| ||||| | ||||||||||||||||||    
T  37698570 aaatctcacacaaaattcttaaatgaaacccactaataaactatcaacaactttatatcactacattttaattttttaatattaaaa 37698484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 23156284 - 23156368
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||  |||||||||||||||||  ||||||||||||| |||||||||||| ||||| | ||||||||||||||||||    
T  23156284 atctcacacaaagttcttaaatgagacccattaatcaactatcaataactttatatcactacattttaattttttaatattaaaa 23156368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 19594093 - 19594002
Alignment:
Q  52 aactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgagaccc 143  Q
    ||||||||| ||||||||||||||| || ||||||||||||| |||||||||||||  || |||||||||| ||| ||||||||| ||||||    
T  19594093 aactatcaataactttatatcattatatttcaattttttaatcttaaaaaggtgtgggtctcacttaagattgagagtcttaagttagaccc 19594002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 19753042 - 19753132
Alignment:
Q  53 actatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgagaccc 143  Q
    |||||||| || ||||||||||||||| ||||||||||||| |||||||||||||  || |||||||||| ||| ||||||||| ||||||    
T  19753042 actatcaataattttatatcattacatttcaattttttaatcttaaaaaggtgtgggtctcacttaagattgagagtcttaagttagaccc 19753132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 31330471 - 31330390
Alignment:
Q  19 tcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||| |||||||||||||||  || ||||||||||||| || | ||||||||||||| ||||||||||||||||||||    
T  31330471 tcacacaaatttcttaaatgagacgtactaatcaactatcaataagtatatatcattacatttcaattttttaatattaaaa 31330390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 36482053 - 36482177
Alignment:
Q  19 tcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccactta 118  Q
    ||||||||  |||||||||||||  ||| ||||||||||||| |||||||||| |||| || ||||||||||||||||||||  ||| || |||| ||||    
T  36482053 tcacacaaagttcttaaatgagattcactaatcaactatcaataactttatataattatatttcaattttttaatattaaaagagtgcgattcccgctta 36482152  T
Q  119 agatagagggtcttaagtgagaccc 143  Q
    | |  | ||||||||||| ||||||    
T  36482153 aaagtgggggtcttaagtaagaccc 36482177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 36901081 - 36901165
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||| || |||||||||||||||| || ||||||||||||| || |||||||||||| || | ||||||||||||||||||    
T  36901081 atctcacaaaaatttcttaaatgagacctactaatcaactatcaataattttatatcattatattttaattttttaatattaaaa 36901165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 39853849 - 39853769
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatatt 96  Q
    |||||||| || ||||||||||| ||||||| ||||||||||||| ||||||||| ||||| || ||||||||||||||||    
T  39853849 atctcacaaaaatttcttaaatgggacccactaatcaactatcaataactttataccattatatttcaattttttaatatt 39853769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 13057950 - 13057864
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatc-aattttttaatattaaaaa 101  Q
    ||||||||||| ||||||||||| |||  || ||||||||||||| ||||||||||||| |||| || |||||||||||||||||||    
T  13057950 atctcacacaaatttcttaaatgtgacttactaatcaactatcaataactttatatcataacatttcaaattttttaatattaaaaa 13057864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 2888178 - 2888113
Alignment:
Q  62 aactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagg 127  Q
    ||||||||||||||| || ||||||||||||||||||||| | |||||||||||||||||| ||||    
T  2888178 aactttatatcattatatttcaattttttaatattaaaaatgcgtgaatcccacttaagattgagg 2888113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 29914447 - 29914528
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatatta 97  Q
    ||||||||||| |||| |||||| ||| | | ||||||||||||| |||||||||| ||||||| |||||||||||||||||    
T  29914447 atctcacacaaatttcataaatgggactcgctaatcaactatcaataactttatattattacatttcaattttttaatatta 29914528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 5513891 - 5514014
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    ||||||| ||| ||| ||||||||||| ||| |||| || ||||| |||||||||| ||||||| |||||||||| |||||||||  |||||  || | |    
T  5513891 atctcacgcaaattttttaaatgagactcactaatcgaccatcaataactttatataattacatttcaatttttttatattaaaagagtgtgtgtctcgc 5513990  T
Q  116 ttaagatagagggtcttaagtgaga 140  Q
    ||||||| | |||||||||||||||    
T  5513991 ttaagattg-gggtcttaagtgaga 5514014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 44441347 - 44441415
Alignment:
Q  32 ttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    ||||||| ||||||| ||||||||||||| |||||||||||| ||||| | ||||||||||||||||||    
T  44441347 ttaaatgggacccactaatcaactatcaataactttatatcactacattttaattttttaatattaaaa 44441415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 25324577 - 25324671
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgagaccc 143  Q
    ||||| ||||||| || |||||||||||| ||| |||||||||||||||||||| |||||  || |||||||||| |  |||||||||||||||||    
T  25324577 aatcagctatcaataattttatatcattatataacaattttttaatattaaaaa-gtgtgggtctcacttaagattggtggtcttaagtgagaccc 25324671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 46748089 - 46748155
Alignment:
Q  34 aaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    ||||| ||||| | |||||||| |||| ||||||||||||||||||||||||| |||||||||||||    
T  46748089 aaatgggaccccctaatcaactgtcaataactttatatcattacatatcaattatttaatattaaaa 46748155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 46282186 - 46282259
Alignment:
Q  28 tttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    ||||||||||||||||||| ||||||||||||| || ||||||||||||  | | ||||||| |||||||||||    
T  46282186 tttcttaaatgagacccactaatcaactatcaataattttatatcattatgttttaatttttgaatattaaaaa 46282259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 23802224 - 23802303
Alignment:
Q  63 actttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgagaccc 143  Q
    ||||||||||||||||| |||||||||||||||| |||  ||||||||||  |||||||| || |||||||||| ||||||    
T  23802224 actttatatcattacatttcaattttttaatattgaaagagtgtgaatcctgcttaagattga-ggtcttaagtaagaccc 23802303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 36657932 - 36658016
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||  |||||||||| ||||||| ||||||||||||| || |||||| ||||| || | ||| ||||||||||||||    
T  36657932 atctcacacaaagttcttaaatgggacccactaatcaactatcaataattttataccattatattttaatattttaatattaaaa 36658016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 4874942 - 4874995
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    ||||||||||||| |||||||||||||||||| | ||||||| |||||||||||    
T  4874942 aatcaactatcaataactttatatcattacattttaatttttaaatattaaaaa 4874995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 6068177 - 6068092
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    |||||| |||| ||| |||||| | | |||| ||||||||| ||| || ||| ||||||||||| |||||||||||||||||||||    
T  6068177 atctcatacaaattttttaaataaaatccactaatcaactaccaataattttctatcattacatttcaattttttaatattaaaaa 6068092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 43095543 - 43095466
Alignment:
Q  62 aactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgagac 141  Q
    ||||| ||||||||| || |||||||||||||||||||||  ||  ||||||||||||||| || |||||||||||||||    
T  43095543 aacttcatatcattatatttcaattttttaatattaaaaaaatg-caatcccacttaagattga-ggtcttaagtgagac 43095466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 7751691 - 7751649
Alignment:
Q  62 aactttatatcattacatatcaattttttaatattaaaaaggt 104  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  7751691 aactttatatcactacatattaattttttaatattaaaaaggt 7751649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 27334429 - 27334367
Alignment:
Q  39 agacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    |||||||  ||||| ||||||| |||| ||||||||||||| ||||| |||||||||||||||    
T  27334429 agacccattaatcatctatcaataactctatatcattacatttcaatattttaatattaaaaa 27334367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 15018443 - 15018374
Alignment:
Q  32 ttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    |||||||||| | || |||||| |||||| |||||||||| ||||||| | ||||||| |||||||||||    
T  15018443 ttaaatgagatctactaatcaattatcaataactttatattattacattttaatttttgaatattaaaaa 15018374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 36039103 - 36039050
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    ||||||||||| | ||||||||||||||| || ||| |||||||||||||||||    
T  36039103 aatcaactatcgataactttatatcattatatttcatttttttaatattaaaaa 36039050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 7751908 - 7751858
Alignment:
Q  19 tcacacaactttcttaaatgagacccacaaatcaactatcaacaactttat 69  Q
    |||||||| ||| ||||||||||| |||||||||||| |||| ||||||||    
T  7751908 tcacacaaattttttaaatgagactcacaaatcaactgtcaataactttat 7751858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 30859585 - 30859528
Alignment:
Q  86 tttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgagaccc 143  Q
    |||||||||||||||| |||| |  |||||||||||| || |||||||||| ||||||    
T  30859585 tttttaatattaaaaatgtgtaagccccacttaagattgaaggtcttaagtaagaccc 30859528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 41172570 - 41172623
Alignment:
Q  32 ttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaat 85  Q
    ||||||||||| ||| |||||| |||||  |||||||||||||||||| |||||    
T  41172570 ttaaatgagacacactaatcaattatcattaactttatatcattacatttcaat 41172623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 48615334 - 48615410
Alignment:
Q  18 ctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatat 95  Q
    ||||||||| ||||||||| |  | |||  ||||| ||||||| |||||||||||||||||| || ||||||||||||    
T  48615334 ctcacacaaatttcttaaacggaatccattaatcatctatcaataactttatatcattacatttc-attttttaatat 48615410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 10180658 - 10180790
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    |||| |||||| |||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||  ||||||    
T  10180658 atcttacacaaatttcttaaatgagatccacaa-tcaactatcaataactttatatcattacatatcaattttttaatattaaaaaggtatgggtcccac 10180756  T
Q  116 ttaagatagagggtcttaagtgagaccctgggtc 149  Q
    ||||||| | | ||||||||||||||| ||||||    
T  10180757 ttaagattgggcgtcttaagtgagaccatgggtc 10180790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 26699083 - 26698962
Alignment:
Q  19 tcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccactta 118  Q
    |||||||| ||||||||||||||| ||| ||||||| || || ||||||||||||||  ||||||||||||||  ||||||||||||||| |||||||||    
T  26699083 tcacacaaatttcttaaatgagacacactaatcaacgattaataactttatatcattgaatatcaatttttta--attaaaaaggtgtgagtcccactta 26698986  T
Q  119 agatagagggtcttaagtgagaccc 143  Q
    ||| |  ||||||||||||||||||    
T  26698985 aga-atggggtcttaagtgagaccc 26698962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 30865968 - 30865881
Alignment:
Q  19 tcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgt 106  Q
    ||||| || ||||||||||||||| ||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||    
T  30865968 tcacataaatttcttaaatgagactcactaatcaactatcaataactttatatcattacatttcaattttttaatattaaaaaagtgt 30865881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 39055242 - 39055156
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaag 102  Q
    |||||||||||  ||||||||||| |||||| ||||||||||||| |||||||||||||||||| | ||||||||||||||||||||    
T  39055242 atctcacacaaagttcttaaatgaaacccactaatcaactatcaataactttatatcattacattttaattttttaatattaaaaag 39055156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 35382410 - 35382550
Alignment:
Q  19 tcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccactta 118  Q
    ||||||||  |||||||||||||| ||| ||||||||||||  ||||||||||||||| || ||||||||| ||||||||||  |||||  |||| ||||    
T  35382410 tcacacaaagttcttaaatgagacacactaatcaactatcactaactttatatcattatatttcaatttttaaatattaaaagagtgtgggtcccgctta 35382509  T
Q  119 agatagagggtcttaagtgagaccctgggtcctatgagacc 159  Q
    | |  ||||||||||||| | |||||||||| ||| |||||    
T  35382510 aaagtgagggtcttaagtaaaaccctgggtcttataagacc 35382550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 53096652 - 53096799
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaa---tattaaaaaggtgtgaatcc 112  Q
    ||||||||||| ||||||||||| |||| || ||||||||||||| |||||||||| |||||||||||| |||||||   |||||||||| ||||  ||     
T  53096652 atctcacacaaatttcttaaatgggaccaactaatcaactatcaataactttatattattacatatcaaatttttaatagtattaaaaagatgtgggtct 53096751  T
Q  113 cacttaagatagagggtcttaagtgagaccctgggtcctatgagacctc 161  Q
    |||||||||  || |||||||| |||||||| | ||| ||| |||||||    
T  53096752 cacttaagaatga-ggtcttaaatgagaccccgtgtcttataagacctc 53096799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 12447498 - 12447422
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaa 92  Q
    |||||||| || |||||||||| |||||||| ||||||||||||| |||||||||||||||||| ||||||||||||    
T  12447498 atctcacaaaaatttcttaaataagacccactaatcaactatcaataactttatatcattacatttcaattttttaa 12447422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 23359182 - 23359098
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||  ||||||||||||| |||||||||||||||||| |||||||||| || | || ||||||||||||||||||||    
T  23359182 atctcacacaaagttcttaaatgagatccacaaatcaactatcaataactttatattataatatttcaattttttaatattaaaa 23359098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 35332027 - 35332111
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||  |||||||||| || |||| ||||||||||||| ||||||||||||||| || ||||||||||||||||||||    
T  35332027 atctcacacaaagttcttaaatgggatccactaatcaactatcaataactttatatcattatatttcaattttttaatattaaaa 35332111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 31262461 - 31262586
Alignment:
Q  19 tcacacaactttcttaaatgagacccacaaatcaactatcaacaa---ctttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    ||||| || |||||| |||| ||||||| ||||||||||||||||   ||||||| |||||||| ||||||||||||||||||||  || ||| | |||     
T  31262461 tcacaaaaatttctttaatgggacccactaatcaactatcaacaataactttataccattacatttcaattttttaatattaaaagagtatgagttccat 31262560  T
Q  116 ttaagatagagggtcttaagtgagac 141  Q
    ||||||| || |||||||||||||||    
T  31262561 ttaagattgaaggtcttaagtgagac 31262586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 2396378 - 2396293
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    |||||||| || |||||||||||  |||||| ||||||||||||| |||||||||||| ||||| |||| ||||||||||||||||    
T  2396378 atctcacaaaaatttcttaaatggaacccactaatcaactatcaataactttatatcagtacatttcaagtttttaatattaaaaa 2396293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 822423 - 822507
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||  |||||||||||||| ||  ||||||||||||| ||| |||||||| ||||| ||||||||||||||||||||    
T  822423 atctcacacaaagttcttaaatgagacacattaatcaactatcaataacattatatcactacatttcaattttttaatattaaaa 822507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 49211107 - 49211023
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||| || || |||||||||||||||  |||||| |||||| |||||||||||||||||| | ||||||||||||||||||    
T  49211107 atctcacaaaaattccttaaatgagacccattaatcaattatcaataactttatatcattacattttaattttttaatattaaaa 49211023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 11347060 - 11346918
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    ||||||||||| ||||||||||||||| ||  |||||| ||| || || |||||||||||| || | |||||| |||||||||||  |||||   ||  |    
T  11347060 atctcacacaaatttcttaaatgagacgcattaatcaattattaataattttatatcattatattttaattttataatattaaaagagtgtgggccctgc 11346961  T
Q  116 ttaagatagagggtcttaagtgagaccctgggtcctatgagac 158  Q
    ||||||| ||||||||||||||| |||| ||||| ||| ||||    
T  11346960 ttaagattgagggtcttaagtgaaaccccgggtcttataagac 11346918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 40918023 - 40918107
Alignment:
Q  14 aaatctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatc-aattttttaatatta 97  Q
    |||||||||||||||||||||||||| |||||  ||||||| ||||| |||||||||||| ||||| || || ||||||||||||    
T  40918023 aaatctcacacaactttcttaaatgacacccatcaatcaacaatcaataactttatatcaatacatttcaaaatttttaatatta 40918107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 52199883 - 52199799
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||  |||||||||| ||||||| |||| |||||||| || | |||||||||| || ||||||||||||||||||||    
T  52199883 atctcacacaaagttcttaaatgggacccactaatccactatcaataattatatatcattatatttcaattttttaatattaaaa 52199799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 35309031 - 35309110
Alignment:
Q  18 ctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatatta 97  Q
    ||||||||| ||| ||||||| ||| ||| ||||||||||||| ||||||||||||||| || | |||||||||||||||    
T  35309031 ctcacacaatttttttaaatgggactcactaatcaactatcaataactttatatcattatattttaattttttaatatta 35309110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 51655207 - 51655132
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaatttttta 91  Q
    |||| |||||| ||| |||||||||||| || ||||||||||||| || |||||||||||||| ||||||||||||    
T  51655207 atcttacacaaatttattaaatgagaccaactaatcaactatcaataattttatatcattacaaatcaatttttta 51655132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 2574125 - 2574199
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagat 122  Q
    |||||||||| || |||||||||||||||||| ||||||||||||| ||||||  ||||| ||||| ||||||||    
T  2574125 aatcaactattaataactttatatcattacatttcaattttttaatgttaaaagagtgtggatcccgcttaagat 2574199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 5036049 - 5036130
Alignment:
Q  62 aactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgagaccc 143  Q
    |||||||||||||||||| ||||||||||||||||||||  ||| || |||| ||||| || ||||||||||| | ||||||    
T  5036049 aactttatatcattacatttcaattttttaatattaaaagagtgagagtcccgcttaaaattgagggtcttaattaagaccc 5036130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 39629241 - 39629321
Alignment:
Q  20 cacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||  ||||||||||||| |||| || |||||||||| || ||||||||||||  | ||||||||||||||||||||    
T  39629241 cacacaaagttcttaaatgagatccactaaacaactatcaataattttatatcattatttttcaattttttaatattaaaa 39629321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 43968848 - 43968777
Alignment:
Q  29 ttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||  ||||||| ||||||||||||| |||||||||||| || || | ||||||||||||||||||    
T  43968848 ttcttaaataggacccactaatcaactatcaataactttatatcactatattttaattttttaatattaaaa 43968777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 54018494 - 54018621
Alignment:
Q  17 tctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccact 116  Q
    ||||| |||| ||| |||||||| |||||| ||| |||| |||| || ||||||| |||| || ||||||||||||||||||||  || | ||| |||||    
T  54018494 tctcagacaaattttttaaatgaaacccactaataaactgtcaataattttatattattatatttcaattttttaatattaaaactgtataaattccact 54018593  T
Q  117 taagatagagggtcttaagtgagaccct 144  Q
    ||| |  || |||||||| |||||||||    
T  54018594 taaaaatgaaggtcttaaatgagaccct 54018621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 22628544 - 22628474
Alignment:
Q  20 cacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaatttttt 90  Q
    ||||||| ||| ||||||| ||| ||| ||||||||||||| |||||||||||||||||| | ||||||||    
T  22628544 cacacaaattttttaaatgggactcactaatcaactatcaataactttatatcattacattttaatttttt 22628474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 44500572 - 44500430
Alignment:
Q  17 tctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccact 116  Q
    |||||||||| ||| | |||| |||  ||| ||||||||||||| |  |||||| |||||||| ||||||||||||||||||||  |||   || || ||    
T  44500572 tctcacacaattttttcaaattagattcactaatcaactatcaatagttttataacattacatttcaattttttaatattaaaatagtgcagattccgct 44500473  T
Q  117 taagatagagggtcttaagtgagaccctgggtcctatgagacc 159  Q
    | |||| ||| ||||||||||||| || ||||| ||| |||||    
T  44500472 tgagattgagagtcttaagtgagatccggggtcttataagacc 44500430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 53779429 - 53779493
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcc 112  Q
    ||||||||||||| ||||| ||||||||| || | ||||||||||||||||||| ||||| ||||    
T  53779429 aatcaactatcaataacttaatatcattatattttaattttttaatattaaaaaagtgtggatcc 53779493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 8825030 - 8824960
Alignment:
Q  29 ttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    ||||||||||  ||| || ||||||||||||| ||||||||||||||| || |||| |||||||||||||||    
T  8825030 ttcttaaatggaacctactaatcaactatcaataactttatatcattatatttcaa-tttttaatattaaaa 8824960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 24030673 - 24030602
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaa 119  Q
    ||||||||||||| ||||||| || ||||||| | ||||||||||||||||||| || ||| |||| |||||    
T  24030673 aatcaactatcaataactttacattattacattttaattttttaatattaaaaaagtatgagtcccgcttaa 24030602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 16461183 - 16461109
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagat 122  Q
    |||||| |||||| ||||||||||||||| || | || ||||||||||||||||  |||| ||| ||||||||||    
T  16461183 aatcaattatcaataactttatatcattatattttaagtttttaatattaaaaatatgtggatctcacttaagat 16461109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 25435948 - 25436072
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    ||||||||||| ||| ||||||| || | || |||| | |||||| ||||||||| |||||||| |||||||| ||||||| |||| |||||  ||  ||    
T  25435948 atctcacacaatttt-ttaaatgggatcgactaatccattatcaataactttatagcattacatttcaattttataatatttaaaaagtgtgtgtcaaac 25436046  T
Q  116 ttaagatagagggtcttaagtgagac 141  Q
    ||||||| ||| |  |||||||||||    
T  25436047 ttaagattgagagcattaagtgagac 25436072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 41916038 - 41916115
Alignment:
Q  23 acaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||| ||| |||||| |||||| |||||||| ||| || || |||||||||||| || | ||||||||||||||||||    
T  41916038 acaaatttattaaataagaccctcaaatcaagtataaataattttatatcattatattttaattttttaatattaaaa 41916115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 143
Target Start/End: Complemental strand, 45832616 - 45832521
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaaga-tagagggtcttaagtgagaccc 143  Q
    |||||| |||||| ||||| ||||||||| || |||| ||||||||||||||| |||| | ||||| ||||| | ||| ||||||||||| ||||||    
T  45832616 aatcaattatcaataactt-atatcattatatttcaaatttttaatattaaaagggtgcggatcccgcttaaaagtagggggtcttaagtaagaccc 45832521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 139
Target Start/End: Complemental strand, 45804034 - 45803942
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagata-gagggtcttaagtgag 139  Q
    ||||||||||||| |||| ||||  ||||| ||| | |||| |||||||||||  ||||| ||||||||||| | | |||| |||||||||||    
T  45804034 aatcaactatcaataactatatacaattacgtattagttttctaatattaaaatagtgtggatcccacttaaaaaatgaggatcttaagtgag 45803942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 46048963 - 46048836
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    |||||||||||  ||||||||||  || ||||||||||||||||| ||||||||| ||||||||| |||||||||||||||| |||||| ||  ||||||    
T  46048963 atctcacacaaagttcttaaatggaactcacaaatcaactatcaataactttataccattacataacaattttttaatattacaaaggtttgggtcccac 46048864  T
Q  116 ttaagatagagggtcttaagtgagaccc 143  Q
    ||||||| ||||||||||||||||||||    
T  46048863 ttaagattgagggtcttaagtgagaccc 46048836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 41212063 - 41211960
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    |||||| |||| |||||||||||||||  || ||||||||||||| |||||||||||||||||| | || |||||||||||||||||||| || || |||    
T  41212063 atctcatacaagtttcttaaatgagacatactaatcaactatcaataactttatatcattacattttaa-tttttaatattaaaaaggtgcgagtcacac 41211965  T
Q  116 ttaag 120  Q
    |||||    
T  41211964 ttaag 41211960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 47075605 - 47075694
Alignment:
Q  30 tcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaa 119  Q
    ||||||| ||||| ||| ||||||||||| | || ||||||||||||||||||||||||||||||||||||| ||| | |||||| ||||    
T  47075605 tcttaaacgagactcactaatcaactatctataattttatatcattacatatcaattttttaatattaaaaatgtgcggatcccatttaa 47075694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 13768600 - 13768663
Alignment:
Q  21 acacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaa 84  Q
    |||||| ||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||    
T  13768600 acacaaatttcttaaatgggacccacaaatcaactatcaataactttatatcagtacatatcaa 13768663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 26085144 - 26085041
Alignment:
Q  19 tcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccactta 118  Q
    ||||| || ||||||||||| ||| |||  |||||| ||||| ||||||||| ||||| || |||||||||||||||||||||  |||| ||||||||||    
T  26085144 tcacataaatttcttaaatgggacacacttatcaaccatcaataactttataccattatatttcaattttttaatattaaaaaaatgtggatcccactta 26085045  T
Q  119 agat 122  Q
    ||||    
T  26085044 agat 26085041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 36902367 - 36902470
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    |||||| |||| |||||||||||| |  ||| ||||||||||||| ||||||||||||||| || | |||||||||||||||||| ||| || ||| |||    
T  36902367 atctcaaacaaatttcttaaatgaaattcactaatcaactatcaataactttatatcattatattttaattttttaatattaaaacggtttggatctcac 36902466  T
Q  116 ttaa 119  Q
    ||||    
T  36902467 ttaa 36902470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 13755196 - 13755262
Alignment:
Q  18 ctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaa 84  Q
    ||||||||| ||||||||||| |||||| |||||||||||||| |||||||||||| ||||||||||    
T  13755196 ctcacacaaatttcttaaatgggacccaaaaatcaactatcaataactttatatcagtacatatcaa 13755262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 54422792 - 54422715
Alignment:
Q  28 tttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgt 106  Q
    ||||||||||||||||||| |||||| |||||| || ||||||||||||||| |||||||||||||| |||||| ||||    
T  54422792 tttcttaaatgagacccactaatcaattatcaataattttatatcattacat-tcaattttttaatactaaaaaagtgt 54422715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 52995699 - 52995823
Alignment:
Q  19 tcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccactta 118  Q
    |||||||| ||| |||||||||||  || ||||||||||||| |||||||||||||||  | | | ||||||||||||||||  ||| |  ||||  |||    
T  52995699 tcacacaaatttgttaaatgagacatactaatcaactatcaataactttatatcattatctttaatttttttaatattaaaagagtgaggctcccgttta 52995798  T
Q  119 agatagagggtcttaagtgagaccc 143  Q
    |||| |||| |||||||||||||||    
T  52995799 agattgaggatcttaagtgagaccc 52995823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 3993648 - 3993527
Alignment:
Q  19 tcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccactta 118  Q
    |||||||| ||| ||||||||||| |   ||||||| ||||| || ||||||||||||||| |||| ||||||||||||||||  | || ||| ||||||    
T  3993648 tcacacaatttttttaaatgagactcgttaatcaaccatcaataaatttatatcattacatttcaa-tttttaatattaaaaaaatatggatcgcactta 3993550  T
Q  119 agatagagggtcttaagtgagac 141  Q
    | |  ||||||||||||||||||    
T  3993549 aaaatgagggtcttaagtgagac 3993527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 30595141 - 30595209
Alignment:
Q  32 ttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    ||||||||||| ||| ||||||||||||| || ||||||||||||||| | |||||||||||| |||||    
T  30595141 ttaaatgagactcactaatcaactatcaataattttatatcattacatttaaattttttaatactaaaa 30595209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 46006121 - 46006205
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||| ||||||  |||||||||  ||||||  ||||||||||||| ||||||||||||||| || | ||||||||||||||||||    
T  46006121 atcttacacaaagttcttaaatttgacccagtaatcaactatcaataactttatatcattatattttaattttttaatattaaaa 46006205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 33831984 - 33832087
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    ||||||||||| |||||| ||||  | |||| ||||||||||||| || || |||||||||||  | |||||||||||||||||||  |||| | |||||    
T  33831984 atctcacacaaatttctttaatggaatccactaatcaactatcaataatttcatatcattacaatttaattttttaatattaaaaacatgtggaacccac 33832083  T
Q  116 ttaa 119  Q
    ||||    
T  33832084 ttaa 33832087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 55272855 - 55272804
Alignment:
Q  49 atcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||| ||||||||||||||| || ||||||||||||||||||||    
T  55272855 atcaactatcaataactttatatcattatatttcaattttttaatattaaaa 55272804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 4009960 - 4009839
Alignment:
Q  19 tcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccactta 118  Q
    |||||||| ||| ||||||||||| |   ||||||| ||||| || ||||||||||||||| | || ||||||||||||||||  | || ||| ||||||    
T  4009960 tcacacaatttttttaaatgagactcgttaatcaaccatcaataaatttatatcattacat-ttaaatttttaatattaaaaaaatatggatcgcactta 4009862  T
Q  119 agatagagggtcttaagtgagac 141  Q
    | |  ||||||||||||||||||    
T  4009861 aaaatgagggtcttaagtgagac 4009839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 19900202 - 19900276
Alignment:
Q  43 ccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccactt 117  Q
    |||| |||||||||| || || ||||||||||||||| | ||||||||||||||||||| ||||  |||||||||    
T  19900202 ccactaatcaactataaataattttatatcattacattttaattttttaatattaaaaaagtgtagatcccactt 19900276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 36619206 - 36619161
Alignment:
Q  56 atcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||    
T  36619206 atcaacaactttatatcattacatttcaattttttaatatcaaaaa 36619161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 141
Target Start/End: Original strand, 3973472 - 3973564
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgagac 141  Q
    ||||||| ||||| || ||||||||||||||| | |||||| ||||||||||||  | || ||| ||||||| |  ||||||||||||||||||    
T  3973472 aatcaaccatcaataaatttatatcattacattttaatttt-taatattaaaaaaatatggatcgcacttaaaaatgagggtcttaagtgagac 3973564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 3996405 - 3996313
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgagac 141  Q
    ||||||| ||||| || ||||||||||||||| | ||||||| |||||||||||  | || ||| ||||||| |  ||||||||||||||||||    
T  3996405 aatcaaccatcaataaatttatatcattacattttaattttt-aatattaaaaaaatatggatcgcacttaaaaatgagggtcttaagtgagac 3996313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 35539670 - 35539614
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatc 72  Q
    |||||||||||  |||||||||| ||||||  ||||||||||||| |||||||||||    
T  35539670 atctcacacaaagttcttaaatgggacccattaatcaactatcaataactttatatc 35539614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 41211769 - 41211725
Alignment:
Q  62 aactttatatcattacatatcaattttttaatattaaaaaggtgt 106  Q
    |||||||||||||||| | ||||||||||||||||||||| ||||    
T  41211769 aactttatatcattacgtttcaattttttaatattaaaaaagtgt 41211725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 36277805 - 36277893
Alignment:
Q  16 atctcacacaactttctt-aaatgagacccacaaatcaactatcaacaactttatatcatta---catatcaattttttaatattaaaa 100  Q
    ||||||||||| ||| || |||| | |||||| ||| || |||||| |||||||||||||||   ||| ||||||||||||||||||||    
T  36277805 atctcacacaaatttttttaaattaaacccactaataaaatatcaataactttatatcattattacatttcaattttttaatattaaaa 36277893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 35539597 - 35539540
Alignment:
Q  62 aactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaa 119  Q
    ||||||||||||||| || |||| |||||||||||||||| ||| |  ||||||||||    
T  35539597 aactttatatcattatatttcaactttttaatattaaaaaagtgcgggtcccacttaa 35539540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 28 - 143
Target Start/End: Original strand, 9505539 - 9505654
Alignment:
Q  28 tttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagg 127  Q
    ||||||||| |||||| || ||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||  |||||||||||| |||||    
T  9505539 tttcttaaacgagacctactaatcaactatcaataactttatattattacatataaattttttaatattaaaaaggtgtgggtcccacttaagaaagagg 9505638  T
Q  128 gtcttaagtgagaccc 143  Q
    |||||||||| |||||    
T  9505639 gtcttaagtgtgaccc 9505654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 43675241 - 43675395
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    |||| |||||| ||| ||||| | |||| |||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||  || || | ||||    
T  43675241 atcttacacaaattttttaaacgggaccaacaaattaactatcaacaactttatatcattgcatatcaatttttcaatattaaaaaaatgcgagttccac 43675340  T
Q  116 ttaagatagagggtcttaagtgagaccctgggtcctatgagacctccgaaaaatt 170  Q
    |||| || ||||||||||||| ||||||||| || |||||||| ||| |||||||    
T  43675341 ttaaaattgagggtcttaagtaagaccctggatcatatgagacatccaaaaaatt 43675395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 49003408 - 49003561
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    |||||||||||  ||||||||| |||||||||||||||||||||| |||||||||  |||||||| ||||||||||||||||||||||||||  || ||     
T  49003408 atctcacacaaaattcttaaattagacccacaaatcaactatcaataactttatacaattacataacaattttttaatattaaaaaggtgtg-gtctcat 49003506  T
Q  116 ttaagatagagggtcttaagtgagaccctgggtcctatgagacctccgaaaaatt 170  Q
    ||||||| | | ||||||||| |||||||| ||| |||  ||||| | |||||||    
T  49003507 ttaagattgggagtcttaagtaagaccctgagtcttataggaccttcaaaaaatt 49003561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 52353832 - 52353917
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    ||||||||||| ||||||||||   |||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  52353832 atctcacacaaatttcttaaatagaacccactaatcaactatcaataactttatatcattacatttcaattttttaatattaaaaa 52353917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 13984118 - 13984034
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||  ||||||||||||||| || ||||||||||||| |||||||||||| ||||| ||||||||||||||||||||    
T  13984118 atctcacacaaaattcttaaatgagacctactaatcaactatcaataactttatatcactacatttcaattttttaatattaaaa 13984034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 43822856 - 43822772
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||  |||||||||| ||||||| ||||||||||||| |||||||||||| ||||| ||||||||||||||||||||    
T  43822856 atctcacacaaagttcttaaatgggacccactaatcaactatcaataactttatatcactacatttcaattttttaatattaaaa 43822772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 11241550 - 11241628
Alignment:
Q  43 ccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaaga 121  Q
    |||| ||||||||||||| ||||||||||||||| || |||||||| |||||||||||| ||||| |||||||||||||    
T  11241550 ccactaatcaactatcaataactttatatcattatatttcaattttataatattaaaaaagtgtggatcccacttaaga 11241628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 44665360 - 44665505
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    |||||| |||| | |||||||||| |  ||| ||||||||||||| || |||||||||||| || ||||||||||||||||||||  || ||| || | |    
T  44665360 atctcatacaaatctcttaaatgaaatacactaatcaactatcaataattttatatcattatatttcaattttttaatattaaaagagtatgagtctcgc 44665459  T
Q  116 ttaagatagagggtcttaagtgagaccctgggtcctatgagacctc 161  Q
    ||||||| | ||||||||||||| |||||  ||| ||| |||||||    
T  44665460 ttaagattgtgggtcttaagtgataccctacgtcatataagacctc 44665505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 47783695 - 47783840
Alignment:
Q  14 aaatctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatccc 113  Q
    |||||||||||||  ||||||||||  ||| |  ||||||||||||| || |||||||||||| || |||||||||||||||||| |  |||||| ||||    
T  47783695 aaatctcacacaaagttcttaaatggaacctattaatcaactatcaataattttatatcattatatttcaattttttaatattaatagagtgtgagtccc 47783794  T
Q  114 acttaagatagagggtcttaagtgagaccctgggtcctatgagacc 159  Q
     ||||| |  | ||||||||||| |||||| ||||| ||| |||||    
T  47783795 gcttaaaagtgggggtcttaagtaagaccccgggtcttataagacc 47783840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 42831725 - 42831641
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||| || |||||||||||||| |||  ||||||||||||| || ||||||||||||||| | ||||||||||||||||||    
T  42831725 atctcacaaaaatttcttaaatgagatccattaatcaactatcaataattttatatcattacattttaattttttaatattaaaa 42831641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 38601007 - 38601111
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    ||||||||||| ||| ||||||| ||||||| |||||| |||||| |||||||||||||||||| | || |||||||||||||| |  |||| |||||||    
T  38601007 atctcacacaaattttttaaatg-gacccactaatcaattatcaataactttatatcattacattttaa-tttttaatattaaagaattgtggatcccac 38601104  T
Q  116 ttaagat 122  Q
    |||||||    
T  38601105 ttaagat 38601111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 51263264 - 51263150
Alignment:
Q  22 cacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaaga 121  Q
    ||||| |||||||||||| || ||| ||||||||||||| |||||||| |||||| || | ||||||||||||||||||| || || ||| | |||||||    
T  51263264 cacaaatttcttaaatgaaacacactaatcaactatcaataactttatgtcattatattttaattttttaatattaaaaatgtatggatctctcttaaga 51263165  T
Q  122 tagagggtcttaagt 136  Q
    |  || |||||||||    
T  51263164 tttagagtcttaagt 51263150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 11569964 - 11570045
Alignment:
Q  19 tcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||| ||||| |||||||||  |  ||||||||||||| |||||||||||||||||| ||||||||||||||| ||||    
T  11569964 tcacacaaatttctcaaatgagacttattaatcaactatcaataactttatatcattacatttcaattttttaatataaaaa 11570045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 40287031 - 40287172
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    |||||||||||  || ||||||| ||||| | ||||||||||||| || |||||  |||||||| | |||||||||||||||||||||||||  |||| |    
T  40287031 atctcacacaaagttattaaatgggacccgctaatcaactatcaataattttat--cattacattttaattttttaatattaaaaaggtgtgggtcccgc 40287128  T
Q  116 ttaagatagagggtcttaagtgagaccctgggtcctatgagacc 159  Q
    ||||  | | ||||||||||| |||| | ||||| ||| |||||    
T  40287129 ttaaagttgtgggtcttaagtaagactccgggtcttataagacc 40287172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 51061670 - 51061750
Alignment:
Q  21 acacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    |||||| ||||||||||| ||||| | |||| |||||||| |||||| ||||||||||| ||||||||||||| |||||||    
T  51061670 acacaaatttcttaaatgggacccgctaatctactatcaataactttctatcattacatttcaattttttaattttaaaaa 51061750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 32851816 - 32851887
Alignment:
Q  29 ttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||| ||| ||| ||||||||||||| || ||||||||| ||||| ||||||||||||||||||||    
T  32851816 ttcttaaatgggacacactaatcaactatcaataattttatatcactacatttcaattttttaatattaaaa 32851887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 27544439 - 27544325
Alignment:
Q  29 ttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagaggg 128  Q
    |||||||||||||||||  || ||| |||||  |||||||  ||||||||| |||| |||||||||||||||  |||||  ||||||||||||| | |||    
T  27544439 ttcttaaatgagacccattaaacaattatcactaactttaagtcattacatttcaactttttaatattaaaagagtgtgggtcccacttaagattggggg 27544340  T
Q  129 tcttaagtgagaccc 143  Q
    |||||| | ||||||    
T  27544339 tcttaaataagaccc 27544325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 641832 - 641928
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgagaccctg 145  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||   ||||  |  ||||| |||  || |||||||||||||||||||    
T  641832 aatcaactatcaataactttatatcattacatatcaa-tttttaatattaaaacaatgtgggtttcactttagaatgaaggtcttaagtgagaccctg 641928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 11566926 - 11567007
Alignment:
Q  19 tcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||| ||||| |||||||||  |  ||||||||||||| |||||||||||||||||| ||| ||||||||||| ||||    
T  11566926 tcacacaaatttctcaaatgagacttattaatcaactatcaataactttatatcattacatttcatttttttaatataaaaa 11567007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 23333840 - 23333755
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    ||||||||||   |||||||||||||| |||  ||||| |||||| |||||||||| |||| || |||||||||||||||||||||    
T  23333840 atctcacacacagttcttaaatgagactcactgatcaaatatcaataactttatattattatatttcaattttttaatattaaaaa 23333755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 36298036 - 36297979
Alignment:
Q  43 ccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||| ||||||||||||| || ||||||||||||||| ||||||||||||||||||||    
T  36298036 ccactaatcaactatcaataattttatatcattacatttcaattttttaatattaaaa 36297979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 25813816 - 25813733
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    ||||||| |||  |||||||||||||||||| ||||||||||||| || ||||||||| ||||| | || |||||||||||||||    
T  25813816 atctcacgcaaagttcttaaatgagacccactaatcaactatcaataattttatatcactacat-ttaaatttttaatattaaaa 25813733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 33041524 - 33041440
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||   | ||||| ||||| ||| ||| ||||||||| || ||||||||||||||||||||| ||||||||||||||    
T  33041524 atctcacacaaaaattttaaacgagactcactaattaactatcaataattttatatcattacatatcaatattttaatattaaaa 33041440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 28278163 - 28278063
Alignment:
Q  39 agacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtga 138  Q
    |||||||| |||||||||  || || |||||| |||| ||| |||| |||||||||||||||  |||||| |||| |||| ||| || ||||||||||||    
T  28278163 agacccactaatcaactaataataattttatagcattgcatttcaaatttttaatattaaaatagtgtgagtcccgcttatgattgatggtcttaagtga 28278064  T
Q  139 g 139  Q
    |    
T  28278063 g 28278063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 11120632 - 11120503
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaag-gtgtgaatccca 114  Q
    |||||||||||  |||||||||   | |||| ||||||||||||| ||||||||||||||| || | || ||||||||||||||||| ||| | |||||     
T  11120632 atctcacacaaagttcttaaatacaatccactaatcaactatcaataactttatatcattatattttaa-tttttaatattaaaaagagtgcggatcccg 11120534  T
Q  115 cttaagatagagggtcttaagtgagaccctgg 146  Q
    ||||| |  || |||||||||| |||||||||    
T  11120533 cttaaaagtga-ggtcttaagtaagaccctgg 11120503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 47364367 - 47364308
Alignment:
Q  61 caactttatatcattacatatcaatt-ttttaatattaaaaaggtgtgaatcccacttaa 119  Q
    ||||||||||||||||||| | |||| ||||||||||||||  |||||||||||||||||    
T  47364367 caactttatatcattacattttaattgttttaatattaaaatagtgtgaatcccacttaa 47364308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 31133168 - 31133288
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgagaccctggg 147  Q
    ||||||||||||| || || |||||||||||| | |||| |||||||||||||| |||||  ||| |||||| || || |||||||||||| ||  ||||    
T  31133168 aatcaactatcaataatttcatatcattacatttaaattatttaatattaaaaaagtgtg-gtcctacttaaaattga-ggtcttaagtgaaacattggg 31133265  T
Q  148 tcctatgagacctccgaaaaatt 170  Q
    || ||| |||||||  |||||||    
T  31133266 tcttataagacctcaaaaaaatt 31133288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 36166974 - 36166888
Alignment:
Q  14 aaatctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||| ||||||||  |||||||||  ||| ||| ||| ||||||||| |||||||||||| ||||| | |||||||| |||||||||    
T  36166974 aaatgtcacacaaaattcttaaattggactcactaataaactatcaataactttatatcactacattttaattttttcatattaaaa 36166888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 43506335 - 43506265
Alignment:
Q  19 tcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttt 89  Q
    |||||||| ||| ||||||  ||| ||| ||||||||||||| |||||||||| ||||||| |||||||||    
T  43506335 tcacacaaatttattaaatttgactcactaatcaactatcaataactttatattattacatttcaattttt 43506265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 11449269 - 11449221
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatatta 97  Q
    |||||||||| || |||||||||||||||||| |||||||||||||||||    
T  11449269 aatcaactataaa-aactttatatcattacatttcaattttttaatatta 11449221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 38118914 - 38118998
Alignment:
Q  19 tcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatca-attttttaatattaaaaag 102  Q
    |||| ||| ||| ||||||||||| ||  ||||||||||||| || ||||||| ||||||| |||  ||||||||||||||||||    
T  38118914 tcactcaaattttttaaatgagactcattaatcaactatcaataattttatattattacatttcaggttttttaatattaaaaag 38118998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 32451814 - 32451885
Alignment:
Q  29 ttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatca-attttttaatattaaa 99  Q
    |||||||||||||||||| ||| || |||||| ||||||||||||||  || |||  |||||||||||||||    
T  32451814 ttcttaaatgagacccactaataaattatcaataactttatatcattgtatttcattttttttaatattaaa 32451885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 51504581 - 51504664
Alignment:
Q  20 cacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatat-caattttttaatattaaaaag 102  Q
    ||||||| ||||||||||  |||||||  ||||||||| || || |||||||||  |||| | |||||||||||||||||||||    
T  51504581 cacacaagtttcttaaataggacccacttatcaactattaataattttatatcacaacattttcaattttttaatattaaaaag 51504664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 38902051 - 38902003
Alignment:
Q  52 aactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||| || ||||||||||||||| || | ||||||||||||||||||    
T  38902051 aactattaataactttatatcattatattttaattttttaatattaaaa 38902003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 41520906 - 41521031
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    |||||||||||  ||| |||||| ||||||||||| ||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||  ||||||    
T  41520906 atctcacacaaagttcctaaatgggacccacaaattaactatcaataactttataccattacatatcaattttttactattaaaaaggtgtgggtcccac 41521005  T
Q  116 ttaagatagagggtcttaagtgagacc 142  Q
    ||||||| || |||||||||| |||||    
T  41521006 ttaagattga-ggtcttaagttagacc 41521031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 3558849 - 3558747
Alignment:
Q  19 tcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccactta 118  Q
    |||||||| |||| |||||| ||||||  ||||||||||||| ||||||| || |||| |||||||||||||||||||||||||||||   |||||||||    
T  3558849 tcacacaaatttcataaatgggacccattaatcaactatcaataactttaaattattagatatcaattttttaatattaaaaaggtgttggtcccactta 3558750  T
Q  119 aga 121  Q
    |||    
T  3558749 aga 3558747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 42951776 - 42951861
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    |||||||||||  |||||||||||||||||| |||||| |||||| || ||||||||| ||||| |||||||||||||||||||||    
T  42951776 atctcacacaaagttcttaaatgagacccactaatcaattatcaataattttatatcactacatttcaattttttaatattaaaaa 42951861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 2375630 - 2375544
Alignment:
Q  14 aaatctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||||  |||||||||| ||||||| ||||||||||||| |||||||||| |||| || | ||||||||||||||||||    
T  2375630 aaatctcacacaaagttcttaaatgggacccactaatcaactatcaataactttatataattatattttaattttttaatattaaaa 2375544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 26675523 - 26675607
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||| || |||||||||| |||||||| |||||| |||||| ||||||||||||| |||  ||||||||||||||||||||    
T  26675523 atctcacataaatttcttaaattagacccactaatcaaatatcaataactttatatcatcacacttcaattttttaatattaaaa 26675607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 26947131 - 26947215
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||| || |||||||||| |||||||| |||||| |||||| ||||||||||||| |||  ||||||||||||||||||||    
T  26947131 atctcacataaatttcttaaattagacccactaatcaaatatcaataactttatatcatcacacttcaattttttaatattaaaa 26947215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 44 - 140
Target Start/End: Complemental strand, 39145226 - 39145131
Alignment:
Q  44 cacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgaga 140  Q
    ||||| ||||||||||| || ||||||| |||| |||| || |||| ||||||||||||||||||||||||||||| || |||| ||||||||||||    
T  39145226 cacaactcaactatcaataattttatataattatatataaaatttt-aatattaaaaaggtgtgaatcccacttaaaattgaggatcttaagtgaga 39145131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 15468166 - 15468309
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    ||||||||||| ||||||||||| || |||| |||||  |||||| || |||||||||||| || ||||||||||||||||||||  |||||  | || |    
T  15468166 atctcacacaaatttcttaaatgggatccactaatcatttatcaataattttatatcattaaatttcaattttttaatattaaaagagtgtgggtaccgc 15468265  T
Q  116 ttaagatagagggtcttaagtgagaccctgggtcctatgagacc 159  Q
    ||||||| || | | ||||||||||| | ||||| ||| |||||    
T  15468266 ttaagattgacgcttttaagtgagacaccgggtcttataagacc 15468309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 12593205 - 12593121
Alignment:
Q  17 tctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaa-ttttttaatattaaaa 100  Q
    ||||| |||| |||||||||||||||| || |||||| |||||| |||||||||||||||||| | || ||||||||||||||||    
T  12593205 tctcaaacaaatttcttaaatgagaccaactaatcaattatcaataactttatatcattacattttaacttttttaatattaaaa 12593121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 13420752 - 13420836
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||  || ||||||| ||| ||| ||||||||||||| |||||||||| |||| || ||||||||||||||||||||    
T  13420752 atctcacacaaagttgttaaatgggactcactaatcaactatcaataactttatataattatatttcaattttttaatattaaaa 13420836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 7293128 - 7293042
Alignment:
Q  14 aaatctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||||  || ||||||  ||| ||| ||| ||||||||| ||| |||||||||||||| ||||||||||||||||||||    
T  7293128 aaatctcacacaaagtttttaaataggactcactaattaactatcaataacattatatcattacatttcaattttttaatattaaaa 7293042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 35463272 - 35463354
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaa 98  Q
    ||||||||||| |||||||||||| |  || |||||||||||||| || ||||||||||||  | ||||||||||||||||||    
T  35463272 atctcacacaaatttcttaaatgaaattcataaatcaactatcaataattttatatcattatgtttcaattttttaatattaa 35463354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 6761444 - 6761497
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    |||||||| ||||||||||||||||||||||| | |||||||||||||||||||    
T  6761444 aatcaactgtcaacaactttatatcattacattttaattttttaatattaaaaa 6761497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 13486648 - 13486580
Alignment:
Q  32 ttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||  |||||| ||||| ||||||| ||||||||||||||| || ||||||||||||||||||||    
T  13486648 ttaaatggaacccactaatcagctatcaataactttatatcattatatttcaattttttaatattaaaa 13486580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 18396562 - 18396646
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||   ||||||||| ||||||| |||||||||| || ||||||||||||  | || ||||||||||||||||||||    
T  18396562 atctcacacaaaaatcttaaatgggacccaccaatcaactataaataactttatatcacaatatttcaattttttaatattaaaa 18396646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 1666848 - 1666922
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagat 122  Q
    ||||||||||||| ||||||||||| ||| || ||||||||||||| | ||||||||||   |||||||||||||    
T  1666848 aatcaactatcaataactttatatcgttatatctcaattttttaatctaaaaaaggtgtaggtcccacttaagat 1666922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 11200816 - 11200711
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    |||||||||||  ||||| ||| ||||| |   |||||||||||| || ||||||| ||||||||| ||||||||||||||||||  |||  |||| |||    
T  11200816 atctcacacaaaattcttgaataagacctattgatcaactatcaataattttatattattacatattaattttttaatattaaaatagtgcaaatctcac 11200717  T
Q  116 ttaaga 121  Q
    ||||||    
T  11200716 ttaaga 11200711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 20420217 - 20420168
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatatta 97  Q
    ||||||||||||| ||||||||||||||| |||||||||||||| |||||    
T  20420217 aatcaactatcaataactttatatcattatatatcaattttttattatta 20420168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 22579715 - 22579651
Alignment:
Q  54 ctatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccactta 118  Q
    ||||||| |||||||||| ||||||| | ||||||||||||||||||||||  || |||||||||    
T  22579715 ctatcaataactttatataattacattttaattttttaatattaaaaaggtacgagtcccactta 22579651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 33133291 - 33133346
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatat 71  Q
    ||||||||||| |||||||||| |||| ||| ||||||||||||| ||||||||||    
T  33133291 atctcacacaaatttcttaaataagactcactaatcaactatcaataactttatat 33133346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 142
Target Start/End: Complemental strand, 41357773 - 41357695
Alignment:
Q  63 actttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgagacc 142  Q
    ||||||||| |||||||||||||||| ||||||||||||  | ||| |||||||||| || | |||||||||| ||||||    
T  41357773 actttatattattacatatcaattttataatattaaaaaattatgagtcccacttaaaattg-gggtcttaagcgagacc 41357695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 1309804 - 1309890
Alignment:
Q  14 aaatctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||||  |||||||||  ||  ||| |||||| |||||| || |||||||||||| || | ||||||||||||||||||    
T  1309804 aaatctcacacaaagttcttaaattggatacactaatcaattatcaataattttatatcattatattttaattttttaatattaaaa 1309890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 1269701 - 1269785
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    ||||||||||| | ||||||| ||||| ||  |||||  |||||| |||||||||||||||||| ||||| || ||||||||||||    
T  1269701 atctcacacaaatatcttaaacgagacacattaatcatgtatcaataactttatatcattacat-tcaatattctaatattaaaaa 1269785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 29558417 - 29558344
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttt 89  Q
    ||||||||||| |||||||||| ||| | |  ||||||||||||| || ||||||||||||||| | |||||||    
T  29558417 atctcacacaaatttcttaaataagatctaataatcaactatcaataattttatatcattacattttaattttt 29558344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 837791 - 837875
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaag 102  Q
    |||||||| || |||||||||||| ||  || ||  ||||||| | || ||||||||||||||| ||||| ||||||||||||||||    
T  837791 atctcacataaatttcttaaatgaaacaaactaa--aactatctataattttatatcattacatttcaatattttaatattaaaaag 837875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 8228828 - 8228765
Alignment:
Q  34 aaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatatta 97  Q
    |||| ||| |||| ||||||||||||| || | ||||||||||||| ||| |||||||||||||    
T  8228828 aaataagatccacgaatcaactatcaataattgtatatcattacatttcatttttttaatatta 8228765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 35982218 - 35982139
Alignment:
Q  22 cacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    ||||| |||||||||| |||| ||  |||  ||||| || |||||||||| |||| || |||||||||||||||||||||    
T  35982218 cacaaatttcttaaataagactcattaattgactataaataactttatataattatatttcaattttttaatattaaaaa 35982139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 28998043 - 28998125
Alignment:
Q  18 ctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||| |||| |||||||||  |||||||| ||||| |||| || |||||||||||||||||| |   || |||||||||||||    
T  28998043 ctcatacaaatttcttaaacaagacccactaatcatctataaataactttatatcattacattttgtttatttaatattaaaa 28998125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 4432410 - 4432328
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||| || ||||||||||||||  ||   |||| ||||||| |||||||||| ||||||| ||||  ||||||||||||||    
T  4432410 atctcacaaaaatttcttaaatgagattcattgatcagctatcaataactttatataattacatttcaa--ttttaatattaaaa 4432328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 14642292 - 14642344
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    ||||||||||||| ||||||||||||||| || | || ||||||||||||||||    
T  14642292 aatcaactatcaataactttatatcattatattttaa-tttttaatattaaaaa 14642344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 34382548 - 34382601
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    ||||| ||||||| || ||||||||||||||| | ||| |||||||||||||||    
T  34382548 aatcatctatcaataattttatatcattacattttaatattttaatattaaaaa 34382601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 31111843 - 31111739
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaa-ttttttaatattaaaaaggtgtgaatccca 114  Q
    ||||||||||| ||| |||||| |||  ||  |||||||||| || |  |||||||||| |||| |||| ||||||||||||||||| ||| ||||  ||    
T  31111843 atctcacacaaattttttaaataagaatcattaatcaactattaatagttttatatcatcacatttcaaattttttaatattaaaaaagtgagaatatca 31111744  T
Q  115 cttaa 119  Q
    |||||    
T  31111743 cttaa 31111739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 16341990 - 16341865
Alignment:
Q  43 ccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaaga-tagagggtcttaagtgagac 141  Q
    |||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||| || |||||||||||| | | ||||||||||||||||    
T  16341990 ccacaaatcaactatcaataactttatatctttacataacaattttttaatattaaaaaggtgcgagtcccacttaagatttgggggtcttaagtgagac 16341891  T
Q  142 cctgggtcctatgagacctccgaaaa 167  Q
      |||||| ||| |||||||| ||||    
T  16341890 attgggtcttataagacctccaaaaa 16341865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 43 - 170
Target Start/End: Original strand, 16117983 - 16118111
Alignment:
Q  43 ccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaaga-tagagggtcttaagtgagac 141  Q
    |||||||||||||||||| ||||||||||||||| ||| | |||||||||||||||||||||| || |||||||||||| | | ||||||||||||||||    
T  16117983 ccacaaatcaactatcaataactttatatcattatataaccattttttaatattaaaaaggtgcgagtcccacttaagatttgggggtcttaagtgagac 16118082  T
Q  142 cctgggtcctatgagacctccgaaaaatt 170  Q
     || |||| ||| |||||||| |||||||    
T  16118083 actaggtcttataagacctccaaaaaatt 16118111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 40999753 - 40999630
Alignment:
Q  21 acacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaag 120  Q
    |||||| |||||||||||  |||||| ||||||| ||||| ||||||||||||||| || ||||| ||||||||||||| | |||||  |||||||||||    
T  40999753 acacaaatttcttaaatggaacccactaatcaaccatcaataactttatatcattatatttcaatcttttaatattaaacaagtgtgggtcccacttaag 40999654  T
Q  121 atagagggtcttaagtgagaccct 144  Q
    || |||||||||||||||||||||    
T  40999653 attgagggtcttaagtgagaccct 40999630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 11922026 - 11921881
Alignment:
Q  14 aaatctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatccc 113  Q
    ||||||||||||| ||||||||||| |||| || ||||||||| ||| ||||||||||||||| ||   ||||||||||||||||||  |||||| ||||    
T  11922026 aaatctcacacaaatttcttaaatgggacctactaatcaactaccaataactttatatcattagattctaattttttaatattaaaagtgtgtgagtccc 11921927  T
Q  114 acttaagatagagggtcttaagtgagaccctgggtcctatgagacc 159  Q
     |||||||| | ||||||||||| |||||| ||||| ||| |||||    
T  11921926 gcttaagattgggggtcttaagtaagaccccgggtcttataagacc 11921881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 34234965 - 34234878
Alignment:
Q  15 aatctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaag 102  Q
    ||||||| |||| ||| |||||| |||||||| |||||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  34234965 aatctcatacaaatttattaaattagacccactaatcaattatcaataactttatatcattacatttcaattttttaatattaaaaag 34234878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 37347884 - 37348011
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    |||||||||||  |||||||||  |||| ||||||||| | |||| ||||||||| |||||||||| || |||||| |||||||||||||||| ||||||    
T  37347884 atctcacacaaagttcttaaatatgacctacaaatcaagtgtcaataactttataccattacatattaa-tttttactattaaaaaggtgtgagtcccac 37347982  T
Q  116 ttaagatagagggtcttaagtgagaccctg 145  Q
    ||||||| || |||||||| | ||||||||    
T  37347983 ttaagattga-ggtcttaaattagaccctg 37348011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 41068835 - 41068974
Alignment:
Q  17 tctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccact 116  Q
    ||||||||||  || ||||||||||||   |||||||||||||| ||||||||||||||| || |||||||||| ||| |||||| |||||  |||||||    
T  41068835 tctcacacaaaatttttaaatgagaccactaaatcaactatcaataactttatatcattatatttcaatttttt-ata-taaaaaagtgtgggtcccact 41068932  T
Q  117 taagatagagggtcttaagtgagaccctgggtcctatgagac 158  Q
    ||| || ||| |||||||||||||||||| ||| ||| ||||    
T  41068933 taaaattgagagtcttaagtgagaccctgagtcttataagac 41068974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 159
Target Start/End: Original strand, 4279887 - 4280002
Alignment:
Q  43 ccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgagacc 142  Q
    |||||||||||||||||| ||||||||| ||| ||||||||| |||||| ||||||||||  ||| ||||||||||| || | ||||||||||| |||||    
T  4279887 ccacaaatcaactatcaataactttataccatcacatatcaactttttactattaaaaagacgtggatcccacttaaaattg-gggtcttaagttagacc 4279985  T
Q  143 ctgggtcctatgagacc 159  Q
    |||| || ||| |||||    
T  4279986 ctggatcttataagacc 4280002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 36267054 - 36266927
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    ||||||||| | ||||||||||||||||||| ||||| ||||||| ||||||     ||||||| |||| |||||||||||||||  |||||  || |||    
T  36267054 atctcacacgaatttcttaaatgagacccactaatcagctatcaataacttt-----attacatttcaa-tttttaatattaaaatagtgtgggtctcac 36266961  T
Q  116 ttaagatagagggtcttaagtgagaccctgggtc 149  Q
    ||||||| | ||||| ||||||||||||||||||    
T  36266960 ttaagattgggggtcctaagtgagaccctgggtc 36266927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 36887626 - 36887697
Alignment:
Q  29 ttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    ||||||||||||| |||| ||||||||||||| || ||||||||||| ||| ||||||||||||||||||||    
T  36887626 ttcttaaatgagatccactaatcaactatcaataaatttatatcattgcatttcaattttttaatattaaaa 36887697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 65437 - 65523
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaag 102  Q
    ||||||||||| ||| |||||||||| |||  ||||||||||||| || ||| ||||||||||| |||||||||| |||||||||||    
T  65437 atctcacacaaatttattaaatgagaaccattaatcaactatcaataagtttgtatcattacatttcaatttttttatattaaaaag 65523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 44887284 - 44887368
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||| |||| ||| |||||||||| |||  ||||||||||||| || |||||||||||| || ||||||||||||||||||||    
T  44887284 atctcaaacaaattttttaaatgagatccaataatcaactatcaataaatttatatcattatatttcaattttttaatattaaaa 44887368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 13022786 - 13022873
Alignment:
Q  34 aaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaaga 121  Q
    |||||| || ||| ||||||||||||| || ||||||| ||||||| |||||||||||||||||||||  ||||||| | ||||||||    
T  13022786 aaatgaaactcactaatcaactatcaataaatttatattattacatttcaattttttaatattaaaaaaatgtgaattcgacttaaga 13022873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 45135818 - 45135758
Alignment:
Q  40 gacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    ||||||||||||||||||||| ||||||||||||||| || ||| || |||||||||||||    
T  45135818 gacccacaaatcaactatcaataactttatatcattatatttcagttatttaatattaaaa 45135758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 6562986 - 6562897
Alignment:
Q  51 caactatcaacaactttatatcattacatatcaattttttaatatt-aaaaaggtgtgaatcccacttaagatagagggtcttaagtgagac 141  Q
    |||||||||| |||||||||||||||||| |||| ||||||||||| |||||  ||||||||||||||| |||  || ||||||||||||||    
T  6562986 caactatcaataactttatatcattacatttcaa-tttttaatattaaaaaaaatgtgaatcccacttatgat-tagagtcttaagtgagac 6562897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 34375115 - 34375045
Alignment:
Q  30 tcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    ||||||||| ||||||  ||||||||||||| |||||||||| ||||||| |||| ||||||||||||||||    
T  34375115 tcttaaatgggacccattaatcaactatcaataactttatattattacatttcaa-tttttaatattaaaaa 34375045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 5038793 - 5038665
Alignment:
Q  16 atctcacacaactttcttaaatgag--acccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatccc 113  Q
    ||||||||||| |||||||| || |  |||||| ||||||||||||| || ||||||| |||| || | ||||||||||||||||||   ||||  ||||    
T  5038793 atctcacacaaatttcttaattgtgtgacccactaatcaactatcaataattttatattattatattttaattttttaatattaaaatattgtgtgtccc 5038694  T
Q  114 acttaagatagagggtcttaagtgagaccc 143  Q
     |||||||| || | |||||||||||||||    
T  5038693 gcttaagattga-gatcttaagtgagaccc 5038665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 26312551 - 26312428
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    ||||||||||| ||| ||||||   |||||| ||||||||| ||| |||||||| ||||||||| || |||||||||||||| ||  |||||   ||| |    
T  26312551 atctcacacaaatttattaaatagaacccactaatcaactaccaataactttatgtcattacatttctattttttaatattagaagagtgtg--gcccgc 26312454  T
Q  116 ttaagatagagggtcttaagtgagac 141  Q
    ||||||| | ||||||||||| ||||    
T  26312453 ttaagattgggggtcttaagtaagac 26312428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 14772969 - 14773053
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    |||||||||||  |||||||||| ||| ||  ||||||||||||| ||||||||| || | ||| |||||||||||||||||||||    
T  14772969 atctcacacaaagttcttaaatgggactcattaatcaactatcaataactttata-cactgcatttcaattttttaatattaaaaa 14773053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 6459158 - 6459074
Alignment:
Q  17 tctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    ||||| |||| |||| ||||||||||  || ||||||||||||| || ||| |||||||| || | |||||||||||||||||||    
T  6459158 tctcatacaaatttcgtaaatgagacttactaatcaactatcaataattttctatcattatattttaattttttaatattaaaaa 6459074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 26297163 - 26297112
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaa 99  Q
    ||||||||||||| ||||||||||||  |||| |||||||||||||||||||    
T  26297163 aatcaactatcaataactttatatcaccacatttcaattttttaatattaaa 26297112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 32887673 - 32887752
Alignment:
Q  43 ccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagat 122  Q
    |||| |||||||||| || |||||||||| ||||||| | ||||||||||||||||||  |||||  ||||| |||||||    
T  32887673 ccactaatcaactataaataactttatattattacattttaattttttaatattaaaagagtgtgggtcccaattaagat 32887752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 3668915 - 3668837
Alignment:
Q  19 tcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatatta 97  Q
    |||||||| |||||||||| ||| |||| ||| ||||||| | || ||||||||||||| | | |||||||||||||||    
T  3668915 tcacacaaatttcttaaataagaaccactaattaactatcgataattttatatcattacgttttaattttttaatatta 3668837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 18970075 - 18970013
Alignment:
Q  17 tctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacat 79  Q
    |||||||||| |||||||||||| || ||| |||||||||| || |||||||||| |||||||    
T  18970075 tctcacacaaatttcttaaatgaaactcactaatcaactattaataactttatataattacat 18970013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 28857158 - 28857050
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaacta---tcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcc 112  Q
    |||| |||||| |||||||||| ||||  || |||||||||   | || |||||||||| |  |||||||||||||||||||||||||| |||||  ||     
T  28857158 atcttacacaaatttcttaaataagacttactaatcaactagtattaataactttatattaccacatatcaattttttaatattaaaaaagtgtgggtct 28857059  T
Q  113 cacttaaga 121  Q
    |||||||||    
T  28857058 cacttaaga 28857050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 34820955 - 34821029
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagat 122  Q
    ||||||||||||  |||||||||||||||||| | ||||||||||||||| ||| ||  | | ||||||||||||    
T  34820955 aatcaactatcagtaactttatatcattacattttaattttttaatattacaaatgttcggaccccacttaagat 34821029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 7868349 - 7868448
Alignment:
Q  41 acccacaaatcaactatcaacaacttt-atatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgag 139  Q
    |||||| |||||| |||||| |||||| |||||||||||| |||||||||||| ||||||   ||||| ||  |||||||||| | ||||| ||||||||    
T  7868349 acccaccaatcaattatcaataacttttatatcattacatttcaattttttaacattaaatgagtgtggataacacttaagatcg-gggtcctaagtgag 7868447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 9583222 - 9583138
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||  |||||||||  ||||||| |||||| | |||| ||||||| ||||||| || |||||||||||  |||||||    
T  9583222 atctcacacaaagttcttaaattggacccactaatcaattgtcaataactttacatcattatatttcaattttttatcattaaaa 9583138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 3949058 - 3949109
Alignment:
Q  50 tcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    |||| |||||| |||||||||||||||||| |||||||| |||| |||||||    
T  3949058 tcaattatcaataactttatatcattacatttcaattttataatgttaaaaa 3949109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 6710947 - 6710989
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaatttttt 90  Q
    ||||||||||||| |||||||||||||||||| | ||||||||    
T  6710947 aatcaactatcaataactttatatcattacattttaatttttt 6710989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 142
Target Start/End: Original strand, 37648551 - 37648640
Alignment:
Q  52 aactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgagacc 142  Q
    ||||||||| ||||||||||||| |||| |||||||||| |||||| ||| |||||   || ||||| ||| |  ||||||||||||||||    
T  37648551 aactatcaataactttatatcatcacatttcaatttttt-atattataaaagtgtggggcctacttaggattggaggtcttaagtgagacc 37648640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 44583440 - 44583494
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaag 102  Q
    |||||| |||| | || |||||||||| |||| ||||||||||||||||||||||    
T  44583440 aatcaaatatccataaatttatatcatcacatttcaattttttaatattaaaaag 44583494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 39368782 - 39368729
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    ||||||||||||| || |||||||  |||||| ||||||||| |||||||||||    
T  39368782 aatcaactatcaataattttatatttttacatttcaatttttgaatattaaaaa 39368729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 46)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 38937872 - 38937721
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    |||||||||||  || ||||||  || |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||  | ||||    
T  38937872 atctcacacaaagtttttaaataggatccacaaatcaactatcaacaactttatatcatcacatattaattttttaatattaaaaagatgtgggttccac 38937773  T
Q  116 ttaagatagagggtcttaagtgagaccctgggtcctatgagacctccgaaaaa 168  Q
    ||||||| | ||||||||||| |||| ||||||| ||| |||| ||| |||||    
T  38937772 ttaagattg-gggtcttaagtaagactctgggtcttataagacttccaaaaaa 38937721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 28557326 - 28557199
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    |||||||| || ||| ||||| ||||| ||| |||||||||||||||  ||||||| ||||||| ||||||||||||||||||||  ||||| |||||||    
T  28557326 atctcacataatttttttaaaagagactcactaatcaactatcaacacttttatattattacatttcaattttttaatattaaaagagtgtggatcccac 28557227  T
Q  116 ttaagatagagggtcttaagtgagaccc 143  Q
     |||||| ||||||||||||||||||||    
T  28557226 ataagattgagggtcttaagtgagaccc 28557199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 28540751 - 28540626
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    ||||||||||| ||||||||| ||||| ||| ||||||||||||| |  ||||||||||||||| ||||||||||||||||||||  |||||| |||| |    
T  28540751 atctcacacaaatttcttaaaagagactcactaatcaactatcaatagttttatatcattacatttcaattttttaatattaaaagagtgtgagtcccgc 28540652  T
Q  116 ttaagatagagggtcttaagtgagac 141  Q
     |||||| |||| |||||||||||||    
T  28540651 ataagattgaggttcttaagtgagac 28540626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 11777714 - 11777831
Alignment:
Q  19 tcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccactta 118  Q
    |||||||| |||||||||||||||| || ||||||||||||| |||||||||||||||||| |||| |||||||||||||||  ||| || ||||  |||    
T  11777714 tcacacaaatttcttaaatgagacctactaatcaactatcaataactttatatcattacatttcaactttttaatattaaaagagtgcgagtcccgttta 11777813  T
Q  119 agatagagggtcttaagt 136  Q
    |||| |||| ||||||||    
T  11777814 agattgaggatcttaagt 11777831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 9134231 - 9134087
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    |||||||||||  |||||||||||||| ||| ||||||||||||| ||||||||||||||| || ||||||||||||||||||||  ||| | ||||| |    
T  9134231 atctcacacaaagttcttaaatgagactcactaatcaactatcaataactttatatcattatatttcaattttttaatattaaaagagtgcggatcccgc 9134132  T
Q  116 ttaagatagagggtcttaagtgagaccctgggtcctatgagacct 160  Q
    |||| |  |||| |||||||| |||||| | ||| ||| ||||||    
T  9134131 ttaaaagggaggatcttaagtaagaccccgagtcttataagacct 9134087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 12734122 - 12733979
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    ||||||||||| |||||||||||||||| || |||||||||||  ||||||||||||||||||| | ||||||||||||||||||| ||||   || ||     
T  12734122 atctcacacaaatttcttaaatgagacc-actaatcaactatcctcaactttatatcattacattttaattttttaatattaaaaaagtgtaggtcaca- 12734025  T
Q  116 ttaagatagagggtcttaagtgagaccctgggtcctatgagacctc 161  Q
    ||||||| |  |||||||||||||||| || ||| ||| |||||||    
T  12734024 ttaagattggtggtcttaagtgagaccatgagtcttataagacctc 12733979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 2603116 - 2603200
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||  ||||||||||||| |||| ||||||||||||| |||||||||||| ||||| ||||||||||||||||||||    
T  2603116 atctcacacaaagttcttaaatgagatccactaatcaactatcaataactttatatcactacatttcaattttttaatattaaaa 2603200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 6519092 - 6519170
Alignment:
Q  22 cacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    ||||| ||||||||||||||| ||| ||||||||||||| |||||||||||||||||| |||||||||||||| |||||    
T  6519092 cacaaatttcttaaatgagactcactaatcaactatcaataactttatatcattacatttcaattttttaatactaaaa 6519170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 8673643 - 8673769
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    |||||||| || ||| ||||||  ||||||| |||||| |||||| |||||||||||| ||||| |  |||||||||||||||||| || ||  |||||     
T  8673643 atctcacataaattttttaaatttgacccactaatcaattatcaaaaactttatatcactacattttcattttttaatattaaaaaagtttgggtcccat 8673742  T
Q  116 ttaagatagagggtcttaagtgagacc 142  Q
    ||||||| |||||||||||||||||||    
T  8673743 ttaagattgagggtcttaagtgagacc 8673769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 13629081 - 13629186
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    |||||| ||||  |||||||||  || ||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||   |||||    
T  13629081 atctcatacaaaattcttaaataggatccagaaatcaactatcaataactttataccattacatatcaattttttaatattaaaaatgtgtgggacccac 13629180  T
Q  116 ttaaga 121  Q
    ||||||    
T  13629181 ttaaga 13629186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 13729493 - 13729598
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    |||||| ||||  |||||||||  || ||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||   |||||    
T  13729493 atctcatacaaaattcttaaataggatccagaaatcaactatcaataactttataccattacatatcaattttttaatattaaaaatgtgtgggacccac 13729592  T
Q  116 ttaaga 121  Q
    ||||||    
T  13729593 ttaaga 13729598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 18806612 - 18806696
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    ||||||||||| ||| ||||||| || |||| ||||||||||||| ||||||||||||||| || ||||||||||||||||||||    
T  18806612 atctcacacaaattttttaaatgggatccactaatcaactatcaataactttatatcattatatttcaattttttaatattaaaa 18806696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 28567852 - 28567760
Alignment:
Q  51 caactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgagaccc 143  Q
    |||||||||| ||||||||||||||| || ||||||||||||||||||||  | |||  |||| |||||||| ||||||||||||||||||||    
T  28567852 caactatcaataactttatatcattatatttcaattttttaatattaaaatagagtgggtcccgcttaagattgagggtcttaagtgagaccc 28567760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 28575445 - 28575353
Alignment:
Q  51 caactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgagaccc 143  Q
    |||||||||| ||||||||||||||| || ||||||||||||||||||||  | |||  |||| |||||||| ||||||||||||||||||||    
T  28575445 caactatcaataactttatatcattatatttcaattttttaatattaaaagagagtgggtcccgcttaagattgagggtcttaagtgagaccc 28575353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 35973430 - 35973520
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgt 106  Q
    ||||||||||  |||||||||||||| | || |||||| |||||| ||| ||||||||||| |||||||||||||||||||||||| ||||    
T  35973430 atctcacacacatttcttaaatgagatctactaatcaattatcaataacattatatcattatatatcaattttttaatattaaaaaagtgt 35973520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 1155180 - 1155310
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcatta----catatcaattttttaatattaaaaaggtgtgaatc 111  Q
    ||||||||||| |||||||||||||||  |  ||||||||| ||| |||||||||||||||    ||| ||||||||||||||||||||  |||||| ||    
T  1155180 atctcacacaaatttcttaaatgagacatattaatcaactaccaataactttatatcattaattacatttcaattttttaatattaaaagagtgtgagtc 1155279  T
Q  112 ccacttaagatagagggtcttaagtgagacc 142  Q
    || |||||||| |  |||||||||| |||||    
T  1155280 ccgcttaagattggaggtcttaagtaagacc 1155310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 5535837 - 5535921
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||  |||||||| |  ||||||||||||||| |||| ||||||||||||||| || ||||||||||||||||||||    
T  5535837 atctcacacaaagttcttaaacggaacccacaaatcaactttcaataactttatatcattatatttcaattttttaatattaaaa 5535921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 23036874 - 23036790
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    ||||||||||| ||||||||  || | ||||  |||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  23036874 atctcacacaaatttcttaatagaaatccactgatcaactatcaataattttatatcattacatatcaattttttaatattaaaa 23036790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 23982289 - 23982182
Alignment:
Q  51 caactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgagaccctgggtcc 150  Q
    |||||||||| ||||||||||||||| || ||||||||||||||||||||| |||||  |||| ||||| |  ||||||||||||| |||||| |||||     
T  23982289 caactatcaataactttatatcattatatttcaattttttaatattaaaaaagtgtg-gtcccgcttaaaagtgagggtcttaagtaagaccccgggtct 23982191  T
Q  151 tatgagacc 159  Q
    ||| |||||    
T  23982190 tataagacc 23982182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 31226513 - 31226597
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||  |||||||||| ||||||| | ||||||||||| || |||||||||||| || ||||||||||||||||||||    
T  31226513 atctcacacaaagttcttaaatgggacccactactcaactatcaataattttatatcattatatttcaattttttaatattaaaa 31226597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 9133882 - 9133754
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    |||||||||||  |||||||||||||| ||| ||||||||| ||| ||||| ||||||||| || |||||||| |||||||||||  ||| | ||||| |    
T  9133882 atctcacacaaagttcttaaatgagactcactaatcaactaccaaaaactt-atatcattatatttcaattttctaatattaaaagagtgcggatcccgc 9133784  T
Q  116 ttaagatagagggtcttaagtgagaccctg 145  Q
    |||| |  ||||||||||||| | ||||||    
T  9133783 ttaaaagtgagggtcttaagtaaaaccctg 9133754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 9604558 - 9604630
Alignment:
Q  28 tttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||  |||||| ||||||||||||| ||||||||||||||| || |||||||||||| |||||||    
T  9604558 tttcttaaatggaacccactaatcaactatcaataactttatatcattagatttcaattttttaacattaaaa 9604630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 28562354 - 28562262
Alignment:
Q  51 caactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgagaccc 143  Q
    |||| ||||| |||||||||| |||| || ||||||||||||||||||||  | |||  |||| |||||||| ||||||||||||||||||||    
T  28562354 caacaatcaataactttatattattatatttcaattttttaatattaaaatagagtgggtcccgcttaagattgagggtcttaagtgagaccc 28562262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 3628303 - 3628224
Alignment:
Q  22 cacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    ||||| |||||||||||| |  ||  ||||||||| ||| |||||||||||||||||| |||||||||||||||||||||    
T  3628303 cacaaatttcttaaatgaaattcattaatcaactagcaataactttatatcattacatctcaattttttaatattaaaaa 3628224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 31128598 - 31128681
Alignment:
Q  14 aaatctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatatta 97  Q
    ||||||| |||||  ||||||||||||||| || ||| ||||||||| ||||||||||||||| || ||||||| |||||||||    
T  31128598 aaatctctcacaaagttcttaaatgagacctactaataaactatcaataactttatatcattatatttcaatttgttaatatta 31128681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 9790087 - 9790177
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgt 106  Q
    ||||||||||| ||||||||||||||| ||  ||||||||||||| ||  ||||||| ||| |||  ||||||||||||||||||| ||||    
T  9790087 atctcacacaaatttcttaaatgagactcattaatcaactatcaaaaatcttatatctttagataataattttttaatattaaaaaagtgt 9790177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 5978560 - 5978633
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttt 89  Q
    |||| ||||||  |||||||||| ||||||| ||||||||||||| ||||||||||||||| || |||||||||    
T  5978560 atctgacacaaagttcttaaatgggacccactaatcaactatcaataactttatatcattatatttcaattttt 5978633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 10954141 - 10954242
Alignment:
Q  41 acccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgaga 140  Q
    |||||| |||||||||||||  | ||||||||||||||| ||||||||||||||||||||   || || |||| || || || ||| |||||||||||||    
T  10954141 acccactaatcaactatcaattattttatatcattacatttcaattttttaatattaaaagattgcgagtcccgctaaaaattgagagtcttaagtgaga 10954240  T
Q  141 cc 142  Q
    ||    
T  10954241 cc 10954242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 10962146 - 10962247
Alignment:
Q  41 acccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgaga 140  Q
    |||||| |||||||||||||  | ||||||||||||||| ||||||||||||||||||||   || || |||| || || || ||| |||||||||||||    
T  10962146 acccactaatcaactatcaattattttatatcattacatttcaattttttaatattaaaagattgcgagtcccgctaaaaattgagagtcttaagtgaga 10962245  T
Q  141 cc 142  Q
    ||    
T  10962246 cc 10962247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 14426164 - 14426293
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    |||||||||||  |||||||||| ||| ||| | |||| |||||| || |||||||||||  || | ||||||||||||||||||  ||||| |||||||    
T  14426164 atctcacacaaagttcttaaatgggactcactactcaattatcaataattttatatcatttaattttaattttttaatattaaaagagtgtggatcccac 14426263  T
Q  116 ttaagatagagggtcttaagtgagaccctg 145  Q
    |||| |  | ||||||||| | ||||||||    
T  14426264 ttaaaagtgggggtcttaaataagaccctg 14426293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 37673805 - 37673889
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||  |||||||||  ||||||| ||||||||||||| || ||||||||| |||||   ||||||||||||||||||    
T  37673805 atctcacacaaagttcttaaattggacccactaatcaactatcaataattttatatcactacattctaattttttaatattaaaa 37673889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 4797277 - 4797360
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaacttt-atatcattacatatcaattttttaatattaa 98  Q
    ||||||||||| ||||||||||| ||| ||  ||||||||||||| |||||| ||||||| |||| | ||||||||||||||||    
T  4797277 atctcacacaaatttcttaaatgtgactcattaatcaactatcaataactttaatatcatcacattttaattttttaatattaa 4797360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 6427146 - 6427229
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaa 99  Q
    ||||||||||| ||| ||||||  |||| || ||||||||||||| || |||||||||||| || | |||||||||||||||||    
T  6427146 atctcacacaaattttttaaataggacctactaatcaactatcaataattttatatcattatattttaattttttaatattaaa 6427229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 5569276 - 5569223
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    ||||||||||||| ||| |||||||||||||| | |||||||||||||||||||    
T  5569276 aatcaactatcaataacattatatcattacatttgaattttttaatattaaaaa 5569223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 5139719 - 5139803
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||   |||||||||| || ||| ||||||||||||| || |||||||||||| || |  |||||||||||||||||    
T  5139719 atctcacacaaagctcttaaatgaaactcactaatcaactatcaataattttatatcattatattttcattttttaatattaaaa 5139803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 16531613 - 16531697
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||| ||||  |||||||| |||| | || ||||||||||  | ||||||||||||||| || ||||||||||||||||||||    
T  16531613 atctcatacaaaattcttaaaagagatctactaatcaactattcataactttatatcattatatttcaattttttaatattaaaa 16531697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 32898573 - 32898652
Alignment:
Q  62 aactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgagacc 142  Q
    |||||||||||||||||| ||  ||||||||||||||||  ||||| ||||| ||||| || |||| ||||||||||||||    
T  32898573 aactttatatcattacatttct-ttttttaatattaaaagtgtgtggatcccgcttaaaattgaggttcttaagtgagacc 32898652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 35468413 - 35468329
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    ||||||| |||  |||||||||||||| ||| ||| ||||||||| ||||||||  || ||||| | ||||||||||||||||||    
T  35468413 atctcactcaaagttcttaaatgagactcactaattaactatcaataactttatgccactacatttgaattttttaatattaaaa 35468329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 30714093 - 30714156
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacat 79  Q
    ||||||||||| |||  |||||| ||| ||| ||||||||||||| ||||||||||||||||||    
T  30714093 atctcacacaaattttgtaaatgggactcactaatcaactatcaataactttatatcattacat 30714156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 30721870 - 30721933
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacat 79  Q
    ||||||||||| |||  |||||| ||| ||| ||||||||||||| ||||||||||||||||||    
T  30721870 atctcacacaaattttgtaaatgggactcactaatcaactatcaataactttatatcattacat 30721933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 1737804 - 1737854
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaa 98  Q
    ||||||||||||| |||||||||| ||||||| |||||||||| |||||||    
T  1737804 aatcaactatcaataactttatattattacatttcaatttttttatattaa 1737854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 7288290 - 7288228
Alignment:
Q  28 tttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaatttttt 90  Q
    |||||||||||||||  || ||||||||||| | ||||||||||||||| |||| ||||||||    
T  7288290 tttcttaaatgagacttactaatcaactatcgataactttatatcattatatattaatttttt 7288228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 36316808 - 36316757
Alignment:
Q  49 atcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    |||||||||||| || ||||||||||||||| |||| ||||||||||||||||    
T  36316808 atcaactatcaataattttatatcattacatttcaa-tttttaatattaaaaa 36316757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 7287997 - 7287943
Alignment:
Q  88 tttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgagacc 142  Q
    ||||||||| |||| ||||| |||||||||||||  |||||||||||| ||||||    
T  7287997 tttaatatttaaaatgtgtggatcccacttaagaatgagggtcttaagcgagacc 7287943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 40451446 - 40451401
Alignment:
Q  56 atcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    ||||||||||||| ||||||  || |||||||||||||||||||||    
T  40451446 atcaacaactttacatcattttatttcaattttttaatattaaaaa 40451401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 30462547 - 30462599
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||| || || | |||| |||||||||||| ||||||||||||||||    
T  30462547 aatcaactattaataattatataccattacatatcagttttttaatattaaaa 30462599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 7693966 - 7694097
Alignment:
Q  15 aatctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatccca 114  Q
    |||||||||||| ||| |||||||  |||||| ||||||||||||| ||||| |||||| ||||| ||||||||||||||||||||| ||||   ||||     
T  7693966 aatctcacacaaattttttaaatggaacccactaatcaactatcaataacttcatatcaatacatttcaattttttaatattaaaaaagtgtaggtccct 7694065  T
Q  115 cttaagatagagggtcttaagtgagaccctgg 146  Q
    |||||||| || ||||||||||||||||||||    
T  7694066 cttaagattgaaggtcttaagtgagaccctgg 7694097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 387802 - 387698
Alignment:
Q  19 tcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattaca-tatcaattttttaatattaaaaaggtgtgaatcccactt 117  Q
    |||||||| |||||||||| |||||||| ||||||||||||| |||||||||| |||| | | | |||||||||||||| ||||  |||| |||||||||    
T  387802 tcacacaaatttcttaaataagacccactaatcaactatcaataactttatattattatatttttaattttttaatatttaaaaaatgtggatcccactt 387703  T
Q  118 aagat 122  Q
    |||||    
T  387702 aagat 387698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 5002414 - 5002498
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||  |||||||||| ||||||| ||||||||||||| |||||||||| |||| || ||||||||| ||||||||||    
T  5002414 atctcacacaaagttcttaaatgggacccactaatcaactatcaataactttatattattatatttcaatttttaaatattaaaa 5002498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 32977416 - 32977500
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||  |||||||||| ||||||| ||||||||||||| ||||||||| || ||||| |||||||||||| |||||||    
T  32977416 atctcacacaaagttcttaaatgggacccactaatcaactatcaataactttataccactacatttcaattttttaacattaaaa 32977500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 9491836 - 9491905
Alignment:
Q  53 actatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagat 122  Q
    |||||||| |||||||||||||||||| | |||||||||||||||||||  ||||  |||||||||||||    
T  9491836 actatcaataactttatatcattacattttaattttttaatattaaaaaaatgtgggtcccacttaagat 9491905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 32658469 - 32658553
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||  ||||||||||  | |||| ||||||||||||| |||||||||||| || || | ||||||||||||||||||    
T  32658469 atctcacacaaagttcttaaatggaatccactaatcaactatcaataactttatatcagtatattttaattttttaatattaaaa 32658553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 18804220 - 18804305
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaa 101  Q
    ||||||||||| |||| ||||||  ||  || ||||||||||||| || ||||||| ||||||| ||||||| |||||||||||||    
T  18804220 atctcacacaaatttcataaatggaacttactaatcaactatcaataattttatattattacatttcaatttattaatattaaaaa 18804305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 22281811 - 22281895
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    ||||| |||||  |||||||||| ||  ||| ||||||| ||||| ||||||||||||||| || |||||||||||| |||||||    
T  22281811 atctcccacaaagttcttaaatgggattcactaatcaaccatcaataactttatatcattatatttcaattttttaacattaaaa 22281895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 6988240 - 6988172
Alignment:
Q  32 ttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||| ||| || || |||||||||| || |||||||||| |||| | ||||||||||||||||||    
T  6988240 ttaaatgaaacctactaaacaactatcaataattttatatcatcacattttaattttttaatattaaaa 6988172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 21940975 - 21941059
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaa 100  Q
    |||||||||||   ||||||||| | ||||| ||| ||||||||| |||||||| | | || || ||||||||||||||||||||    
T  21940975 atctcacacaaaagtcttaaatgggtcccactaataaactatcaataactttatgttactatatttcaattttttaatattaaaa 21941059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 25099150 - 25099034
Alignment:
Q  23 acaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagat 122  Q
    |||| ||| |||||||| ||  || ||||||||||||| || |||||||||||| || | ||||||||||||||||| | ||||   |||||||| ||||    
T  25099150 acaatttttttaaatgatacttactaatcaactatcaataattttatatcattatattttaattttttaatattaaacaagtgttggtcccacttgagat 25099051  T
Q  123 agagggtcttaagtgag 139  Q
     |  | |||||||||||    
T  25099050 tggagatcttaagtgag 25099034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 31103429 - 31103498
Alignment:
Q  28 tttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaa 98  Q
    |||||||||||   ||||| ||| |||||| || || |||||||||||| |||||||||||||||||||||    
T  31103429 tttcttaaatggatcccactaattaactataaataattttatatcatta-atatcaattttttaatattaa 31103498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 33755822 - 33755768
Alignment:
Q  14 aaatctcacacaactttcttaaatgagacccacaaatcaactatcaacaacttta 68  Q
    |||||||||||||  ||||||||||| | |||| ||||||||||||| |||||||    
T  33755822 aaatctcacacaaaattcttaaatgaaatccactaatcaactatcaataacttta 33755768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 31743605 - 31743670
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatat 81  Q
    |||| |||||| ||| ||||||||||  ||  |||||||||| || ||||||||||||||||||||    
T  31743605 atcttacacaaatttattaaatgagatacattaatcaactattaataactttatatcattacatat 31743670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 10078318 - 10078282
Alignment:
Q  65 tttatatcattacatatcaattttttaatattaaaaa 101  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  10078318 tttatatcattacatttcaaatttttaatattaaaaa 10078282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 52 - 161
Target Start/End: Original strand, 55854 - 55963
Alignment:
Q  52 aactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccacttaagatagagggtcttaagtgagaccctgggtcct 151  Q
    ||||||||| |||| |||| ||| |||||||||||||||||||||||||  |||||| | ||||||||||  ||||||||||||||||||||||||||||    
T  55854 aactatcaataactatataccatcacatatcaattttttaatattaaaagagtgtgagttccacttaagaatgagggtcttaagtgagaccctgggtcct 55953  T
Q  152 atgagacctc 161  Q
    || |||||||    
T  55954 ataagacctc 55963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0991 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 2927 - 3053
Alignment:
Q  16 atctcacacaactttcttaaatgagacccacaaatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaaggtgtgaatcccac 115  Q
    ||||| ||||| ||||||||||  ||| ||| |||| |||||||| || |||||||||||| || |||||||||||||| ||||||  | ||| |||| |    
T  2927 atctctcacaaatttcttaaataggacacactaatccactatcaataattttatatcattatatttcaattttttaata-taaaaaaatatgagtcccgc 3025  T
Q  116 ttaagatagagggtcttaagtgagaccc 143  Q
    ||||||| ||||||||||||| ||||||    
T  3026 ttaagattgagggtcttaagtaagaccc 3053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 6136 - 6190
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaag 102  Q
    ||||||||||||| || ||||||| |||| |||||||||||||||||||||||||    
T  6136 aatcaactatcaataattttatattattatatatcaattttttaatattaaaaag 6190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 6154 - 6208
Alignment:
Q  48 aatcaactatcaacaactttatatcattacatatcaattttttaatattaaaaag 102  Q
    ||||||||||||| || ||||||| |||| |||||||||||||||||||||||||    
T  6154 aatcaactatcaataattttatattattatatatcaattttttaatattaaaaag 6208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 4968 - 5016
Alignment:
Q  112 ccacttaagatagagggtcttaagtgagaccctgggtcctatgagacct 160  Q
    ||||||||||  |||| ||||||||||||||||||||| || |||||||    
T  4968 ccacttaagaatgaggatcttaagtgagaccctgggtcttaggagacct 5016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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