View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2837_high_17 (Length: 339)
Name: NF2837_high_17
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_high_17 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 21396431 - 21396092
Alignment:
| Q |
1 |
tctaattagaaatgtatgtgggaggtataaaaa-gacaaacaagggataactagcataattctaaaaacatcatgaggatcttgaagttcatgcaaaaac |
99 |
Q |
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| T |
21396431 |
tctaattagaaatgtatgtgggaggtataaaaaagacaaacaagggataactagcataattctaaaaacatcatgaggatcttgaagttcatgcaaaaac |
21396332 |
T |
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| Q |
100 |
aactaccctgaatactgaaatgtgtcccctggccataattaagcttagattgagtagaaagggtagctcatattaaaaaattagaaaaggtgataataaa |
199 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21396331 |
aactaccctgaatactgaaatgtgtcccctagccataattaagcttagattgagtagaaagggtagctcatattaaaaaattagaaaaggtgatgataaa |
21396232 |
T |
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| Q |
200 |
caaagacccaataattataatttattgtataaatttcgtaaaccaaagaaacatgggagaaagtaactttcaccaaatctccgccaagacatgtgtttaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21396231 |
caaagacccaataattataatttattgtataaatttcgtaaaccaaagaaacatgggagaaagtaactttcaccaaatctccgccaagacatgtgtttaa |
21396132 |
T |
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| Q |
300 |
gaggggaccactatacaagaaatgaaagggaagaagttta |
339 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |
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| T |
21396131 |
gaggggaccactatacaagaaatgaaagggaagaggttta |
21396092 |
T |
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