View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2837_high_19 (Length: 329)
Name: NF2837_high_19
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 38835638 - 38835930
Alignment:
| Q |
19 |
ttatgtgttatgtattatatatgtactacgtactagcatggctaatgaattgaagattcagaacatttaactactttagccnnnnnnnctcacctcctga |
118 |
Q |
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| T |
38835638 |
ttatgtgttatgtattatatatgtactacgtactagcatggctaatgaattgaagatttagaacatttaactactttagccaaaaaaactcacctcccga |
38835737 |
T |
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| Q |
119 |
cttttcaccaggtgattcaaagttatatgcagccaggcgttcttgaatagatagaatatagctatcgtcatcagcttcctgatgatcggcatattatgaa |
218 |
Q |
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| T |
38835738 |
cttttcaccaggtgattcaaagttatatgcagccaggcgttcttgaatagatagaatatagctatcgtcatcagcttcctgatgatcggcatattatgaa |
38835837 |
T |
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| Q |
219 |
aatgtaagcgcttatacatgattggaaggacaaaaatgtagtacaggaataaggcaattggcataccttcttagtattcttaaacaccgatcctcc |
314 |
Q |
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| T |
38835838 |
aatgtaagcgcttatacatgattggaaggacaaaaatgtagtacaggaataaggcaattggcatac---cttagtattcttaaacactgatcctcc |
38835930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 9870382 - 9870464
Alignment:
| Q |
116 |
tgacttttcaccaggtgattcaaagttatatgcagccaggcgttcttgaatagatagaatatagctatcgtcatcagcttcctgatgat |
204 |
Q |
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| T |
9870382 |
tgacttttcaccagatgattctaagttatacacagctaggcgttcttgaagagagagaa------tttcgtcatcagcttcctgatgat |
9870464 |
T |
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