View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2837_high_2 (Length: 676)

Name: NF2837_high_2
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2837_high_2
NF2837_high_2
[»] chr3 (8 HSPs)
chr3 (19-360)||(49187670-49188011)
chr3 (419-666)||(49188070-49188317)
chr3 (468-666)||(49212972-49213170)
chr3 (445-666)||(49191833-49192053)
chr3 (465-666)||(49202958-49203159)
chr3 (468-666)||(49208132-49208330)
chr3 (167-282)||(49202535-49202650)
chr3 (157-253)||(49191354-49191451)
[»] chr1 (5 HSPs)
chr1 (425-666)||(37030590-37030828)
chr1 (468-666)||(32592496-32592694)
chr1 (468-593)||(31527272-31527397)
chr1 (449-530)||(51824272-51824352)
chr1 (536-662)||(51824717-51824843)
[»] chr8 (1 HSPs)
chr8 (468-666)||(26756496-26756696)


Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 49187670 - 49188011
Alignment:
Q  19 accatcaattaggaaacaatcaaaggccaacttctcattgtactggcgagggactctgacttttgggaaacactcaatggccaactatgatcctatactc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49187670 accatcaattaggaaacaatcaaaggccaacttctcattgtactggcgagggactctgacttttgggaaacactcaatggccaactatgatcctatactc 49187769  T
Q  119 atgtgtatatctttgatcctatataaaacatttatgacgacaaaactaagagaacaaatcaagtagcctaattatttaaagaatgcaaatttactattcc 218  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  49187770 atgtgtatatctttgatcctatataaaacatttatcacgacaaaactaagagaacagatcaagtagtctaattatttaaagaatgcaaatttactattcc 49187869  T
Q  219 atataacataatcaataatgaactgaatagagtattttaaaaattagaatatctttacattagtccacaaaagttgtctttaaaatactccattagaatg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49187870 atataacataatcaataatgaactgaatagagtattttaaaaattagaatatctttacattagtccacaaaagttgtctttaaaatactccattagaatg 49187969  T
Q  319 taattagtgttatcaaagaggtgccaaaattaaatcacagta 360  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  49187970 taattagtgttatcaaagaggtgccaaaattaaatcacagta 49188011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 419 - 666
Target Start/End: Original strand, 49188070 - 49188317
Alignment:
Q  419 cagcaaataaaaaatgaatgaagttatatatatatttgcattggactaaactaaccttggtttcatattgaacactagctttgctgagtaaatcagcttt 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49188070 cagcaaataaaaaatgaatgaagttatatatatatttgcattggactaaactaaccttggtttcatattgaacactagctttgctaagtaaatcagcttt 49188169  T
Q  519 aagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgcaactcagcttcccttagagcaacagccttcttcgcctcgacttcagccacc 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49188170 aagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgcaactcagcttcccttagagcaacagccttcttcgcctcgacttcagccacc 49188269  T
Q  619 tgagccgccttggtccaagccgctttcttcttagccaactcagaatta 666  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49188270 tgagccgccttggtccaagccgctttcttcttagccaactcagaatta 49188317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 468 - 666
Target Start/End: Original strand, 49212972 - 49213170
Alignment:
Q  468 actaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgc 567  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||| || |||||||||    
T  49212972 actaaccttagtttcatattgaacactagctttgctaagtaaatcagctttaagcttctcagttgtagtcaaagcattcatcttctcaacctcaccttgc 49213071  T
Q  568 aactcagcttcccttagagcaacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaatta 666  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| || |||||||| ||||||    
T  49213072 aactcagcttcccttagagccacagccttcttcgcctcaacttcagccacctgagccgccttggtccaagcagccttctttttggccaactccgaatta 49213170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 445 - 666
Target Start/End: Original strand, 49191833 - 49192053
Alignment:
Q  445 tatatatatttgcattggactaaactaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagcttctcagttgtagtcaatgcat 544  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| ||||    
T  49191833 tatatatatttgcat-gtactaaactaaccttggtttcatattgaacactagctttgctaaggaactcagctttaagcttctcagttgtagtcaaagcat 49191931  T
Q  545 tcatcctctcgacttcaccttgcaactcagcttcccttagagcaacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgcttt 644  Q
    |||||||||| ||||||||||| |||||||| ||||||||||| || || ||    ||||| ||||| ||||| ||||||||||| ||||||||||||||    
T  49191932 tcatcctctcaacttcaccttgtaactcagcatcccttagagcgacggctttggcagcctcaacttcggccacttgagccgccttagtccaagccgcttt 49192031  T
Q  645 cttcttagccaactcagaatta 666  Q
    |||||||||||| |||||||||    
T  49192032 cttcttagccaattcagaatta 49192053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 465 - 666
Target Start/End: Original strand, 49202958 - 49203159
Alignment:
Q  465 taaactaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcacct 564  Q
    |||||||||||| |||||||||||||||||||||||||| || || || ||||||||||||||||| |||||||| ||||||||||| || |||||||||    
T  49202958 taaactaaccttagtttcatattgaacactagctttgctaaggaactcggctttaagcttctcagtagtagtcaaagcattcatcctttcaacttcacct 49203057  T
Q  565 tgcaactcagcttcccttagagcaacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaat 664  Q
    || |||||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||    
T  49203058 tgtaactcagcatcccttagagccacggccttcttcgcctcaacttcagccacctgagccgccttagtccaagctgccttcttcttagccaactcagaat 49203157  T
Q  665 ta 666  Q
    ||    
T  49203158 ta 49203159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 468 - 666
Target Start/End: Original strand, 49208132 - 49208330
Alignment:
Q  468 actaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgc 567  Q
    ||||||||| || ||||||| ||||||||||||||| || ||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||||    
T  49208132 actaaccttagtgtcatattcaacactagctttgctaaggaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccttgc 49208231  T
Q  568 aactcagcttcccttagagcaacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaatta 666  Q
    |||||||||||||||||||| || || ||    ||||| |  |||||||| ||||||||| | |||||||| |||||||||||||||||||| ||||||    
T  49208232 aactcagcttcccttagagccacggctttagcagcctcaagctcagccacttgagccgccattgtccaagcagctttcttcttagccaactcggaatta 49208330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 282
Target Start/End: Original strand, 49202535 - 49202650
Alignment:
Q  167 agagaacaaatcaagtagcctaattatttaaagaatgcaaatttactattccatataacataatcaataatgaactgaatagagtattttaaaaattaga 266  Q
    ||||||| ||||||  || | ||||||||||| ||||||| || |||  |||||||| || |||||||||| || |||||| | ||| ||||||| ||||    
T  49202535 agagaactaatcaaacagtccaattatttaaaaaatgcaacttgacttctccatatagcagaatcaataatcaattgaataaactatattaaaaaataga 49202634  T
Q  267 atatctttacattagt 282  Q
    ||||||||||||||||    
T  49202635 atatctttacattagt 49202650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 157 - 253
Target Start/End: Original strand, 49191354 - 49191451
Alignment:
Q  157 gacaaaactaagagaacaaatcaagtagcctaattatttaaagaa-tgcaaatttactattccatataacataatcaataatgaactgaatagagtat 253  Q
    |||||||  ||||||||||||||||||| | | ||||||||| || ||||| || |||| ||||||||||| |||||||||| || |||||| |||||    
T  49191354 gacaaaaacaagagaacaaatcaagtagtccagttatttaaaaaaatgcaacttgactactccatataacagaatcaataatcaattgaataaagtat 49191451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 171; Significance: 2e-91; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 425 - 666
Target Start/End: Original strand, 37030590 - 37030828
Alignment:
Q  425 ataaaaaatgaatgaagttatatatatatttgcattggactaaactaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagctt 524  Q
    ||||||||||||| |||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||| || || || |||||||||||    
T  37030590 ataaaaaatgaatcaagttatatatat--ttgcat-ggactaaactaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagctt 37030686  T
Q  525 ctcagttgtagtcaatgcattcatcctctcgacttcaccttgcaactcagcttcccttagagcaacagccttcttcgcctcgacttcagccacctgagcc 624  Q
     ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||    ||||||||||||||||||||||||||||||||||||    
T  37030687 ttcagtagtagtcaatgcattcatcctctcaacttcaccttgtaactcagcttcccttagtttcacagccttcttcgcctcgacttcagccacctgagcc 37030786  T
Q  625 gccttggtccaagccgctttcttcttagccaactcagaatta 666  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37030787 gccttggtccaagccgctttcttcttagccaactcagaatta 37030828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 468 - 666
Target Start/End: Complemental strand, 32592694 - 32592496
Alignment:
Q  468 actaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgc 567  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||| |||    
T  32592694 actaaccttggtttcatactgaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgc 32592595  T
Q  568 aactcagcttcccttagagcaacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaatta 666  Q
    |||||||||||||||||||| ||||| ||    || |||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||    
T  32592594 aactcagcttcccttagagccacagctttagcagcttcgacttcagccacttgagccgccttagtccaagccgctttcttcttcgccaactcagaatta 32592496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 468 - 593
Target Start/End: Original strand, 31527272 - 31527397
Alignment:
Q  468 actaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgc 567  Q
    |||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||| |||    
T  31527272 actaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgc 31527371  T
Q  568 aactcagcttcccttagagcaacagc 593  Q
    |||||||||||||||||||| |||||    
T  31527372 aactcagcttcccttagagccacagc 31527397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 449 - 530
Target Start/End: Original strand, 51824272 - 51824352
Alignment:
Q  449 tatatttgcattggactaaactaaccttggtttcatattgaacactagctttgctgagtaaatcagctttaagcttctcagt 530  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  51824272 tatatttgcat-ggactaaactaaccttggtttcatattgaacactagctttgctaagtaaatcagctttaagcttctcagt 51824352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 536 - 662
Target Start/End: Original strand, 51824717 - 51824843
Alignment:
Q  536 tcaatgcattcatcctctcgacttcaccttgcaactcagcttcccttagagcaacagccttcttcgcctcgacttcagccacctgagccgccttggtcca 635  Q
    |||| ||||||||| |||| || ||||||||||||||||||||||||||| | ||||  ||    ||||| |||| |||||| ||||| ||||| |||||    
T  51824717 tcaaagcattcatcttctcaacctcaccttgcaactcagcttcccttagaaccacagatttagcagcctcaacttgagccacttgagcagccttagtcca 51824816  T
Q  636 agccgctttcttcttagccaactcaga 662  Q
    ||||||||||||| | |||||||||||    
T  51824817 agccgctttcttcatcgccaactcaga 51824843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 468 - 666
Target Start/End: Original strand, 26756496 - 26756696
Alignment:
Q  468 actaaccttggtttcatattgaacactagctttgctgagta---aatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcacct 564  Q
    ||||||||||||||||||| | ||||||||||| || | ||   | |||| ||||||||||||||| |||||||| |||||||||||||| || ||||||    
T  26756496 actaaccttggtttcatat-gtacactagctttactaattaggaactcaggtttaagcttctcagtggtagtcaaagcattcatcctctcaacctcacct 26756594  T
Q  565 tgcaactcagcttcccttagagcaacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaat 664  Q
    ||||||||||||||||| || || ||||| ||    ||||| |||||||| || ||||||||||| |||||||||||||||||||||| |||||| ||||    
T  26756595 tgcaactcagcttccctaagggccacagctttagcagcctcaacttcagcgacttgagccgccttagtccaagccgctttcttcttagtcaactcggaat 26756694  T
Q  665 ta 666  Q
    ||    
T  26756695 ta 26756696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University