View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2837_high_20 (Length: 328)
Name: NF2837_high_20
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 9 - 321
Target Start/End: Original strand, 38836024 - 38836336
Alignment:
| Q |
9 |
ataatattattattaattaatcactaaaacaacaattcaggcttaccaatttcaattgaagaattatcattctctggctcaacatttttggtcttcttag |
108 |
Q |
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| T |
38836024 |
ataatattattattaattaatcactaaaacaacaattcaggcttaccaatttccattgaagaattatcattctctggctcaacatttttggtcttcttag |
38836123 |
T |
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| Q |
109 |
tattctttcgtggttgtggcggcttcattgcaggttttgcagcaaaaccattggctgcctttttacttgcttggttagatctctttcgatcctcttctgc |
208 |
Q |
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| T |
38836124 |
tattctttcgtggttgtggcggcttcattgcaggttttgcagcaaaaccattggctgcctttttacttgcttggttagatctctttcgatcctcttctgc |
38836223 |
T |
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| Q |
209 |
ctctttgctatctagctcctgaaacacaggcaaaagatagtaatacagaccttcattatttcaaatacaaataaacaaattcagtattgtctcttacatc |
308 |
Q |
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| T |
38836224 |
ctctttgctatctagctcctgaaacacaggcaaaagatagtaatacagaccttcattatttcaaatacaaataaacaaattcagtattgtctcttacatc |
38836323 |
T |
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| Q |
309 |
aagtttcatttca |
321 |
Q |
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| T |
38836324 |
aagtttcttttca |
38836336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 45 - 236
Target Start/End: Original strand, 9870712 - 9870894
Alignment:
| Q |
45 |
tcaggcttaccaatttcaattgaagaattatcattctctggctcaacatttttggtcttcttagtattctttcgtggttgtggcggcttcattgcaggtt |
144 |
Q |
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| T |
9870712 |
tcaggtttaccaatttccattgaagaattgtcattctctggttcaacattt---gctttcttagtattctttcgcggctgtggtggcttttttgcaggtt |
9870808 |
T |
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| Q |
145 |
ttgcagcaaaaccattggctgcctttttacttg-cttggttagatctctttcgatcctcttctgcctctttgctatctagctcctgaaacaca |
236 |
Q |
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| T |
9870809 |
ttgtagccaaacgatt------ctttttatttgacatggtt-gatcgcttttgaccctcttctgcctctattctatcaagctcctgaaacaca |
9870894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 9870927 - 9871000
Alignment:
| Q |
249 |
taatacagaccttcattatttcaaatacaaataaacaaattcagta-ttgtctcttacatcaagtttcatttca |
321 |
Q |
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|||||| ||| |||||||||| |||||||| ||| |||| | |||| ||||||||||||||||||||| ||||| |
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| T |
9870927 |
taatactgacattcattattttaaatacaactaagcaaaataagtaattgtctcttacatcaagtttcttttca |
9871000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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