View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2837_high_22 (Length: 311)
Name: NF2837_high_22
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 15172237 - 15171947
Alignment:
| Q |
1 |
ccaagcacgctccctcatcgacggttcaaccgtcgctgtaaaagtcatcgacaaatccaaaaccgtcgatgcatcaatggagcctcgaatcgttcgcgaa |
100 |
Q |
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| T |
15172237 |
ccaagcacgttccctcatcgacggttcaaccgtcgccgtaaaagtcatcgacaaatccaaaaccgtcgatgcatcaatggagccacgaatcgttcgcgaa |
15172138 |
T |
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| Q |
101 |
atcgacgctatgcgtcggcttcaaaatcatccaaacattctcaaaatccatgaagttttagccactaaaactaagatctacctcatcgttgatttcgccg |
200 |
Q |
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| T |
15172137 |
attgacgcgatgcgtcggcttcaaaatcatccaaacattctcaaaatccatgaagttttagccactaaaactaagatctacctcatcgttgatttcgccg |
15172038 |
T |
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| Q |
201 |
gcggcggtgaacttttcgtcaaactcgcccgacgtcgtaagttcccggagccactagcgcggcggtactttcaacagcttgtttccgctct |
291 |
Q |
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| T |
15172037 |
gcggcggtgaacttttcctcaaactcgcccgacgtcgtaagttcccggaggcactagcacggaggtactttcaacagcttgtttccgctct |
15171947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 217
Target Start/End: Complemental strand, 34017659 - 34017471
Alignment:
| Q |
29 |
accgtcgctgtaaaagtcatcgacaaatccaaaaccgtcgatgcatcaatggagcctcgaatcgttcgcgaaatcgacgctatgcgtcggcttcaaaatc |
128 |
Q |
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|||||||| || ||| |||||||||| || |||||||| || || | ||||||||||| || | || ||||||||||| ||||| || || ||| | | |
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| T |
34017659 |
accgtcgccgtcaaaatcatcgacaagtcaaaaaccgttgacgccgccatggagcctcgcattatccgtgaaatcgacgccatgcgccgtctccaacacc |
34017560 |
T |
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| Q |
129 |
atccaaacattctcaaaatccatgaagttttagccactaaaactaagatctacctcatcgttgatttcgccggcggcggtgaacttttc |
217 |
Q |
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| T |
34017559 |
accctaacatcctcaaaatccatgaagtcatggctacaaaaaccaaaatccatcttatcgttgaattcgccgccggtggtgagcttttc |
34017471 |
T |
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