View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2837_high_24 (Length: 304)

Name: NF2837_high_24
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2837_high_24
NF2837_high_24
[»] chr5 (14 HSPs)
chr5 (18-288)||(29608139-29608410)
chr5 (207-288)||(29614299-29614380)
chr5 (18-285)||(30476599-30476866)
chr5 (202-285)||(30520240-30520323)
chr5 (202-285)||(30560580-30560663)
chr5 (175-285)||(29873555-29873665)
chr5 (175-285)||(30241008-30241118)
chr5 (19-96)||(29873399-29873476)
chr5 (175-285)||(17417283-17417393)
chr5 (175-285)||(29854692-29854802)
chr5 (23-281)||(30401306-30401564)
chr5 (19-96)||(29854536-29854613)
chr5 (175-239)||(30207903-30207967)
chr5 (33-98)||(30207761-30207826)
[»] chr4 (1 HSPs)
chr4 (19-285)||(52353186-52353452)
[»] chr3 (1 HSPs)
chr3 (18-281)||(25292566-25292829)


Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 29608410 - 29608139
Alignment:
Q  18 caccctctcgtagaagaaacttgtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgccaacatcaatgtgaaacacaat 117  Q
    |||||||||||||||||||||| | |||||||||| |||||||||| ||||||||| ||||||||||||| ||||||| ||| |||||||||||| ||||    
T  29608410 caccctctcgtagaagaaactttttcttactttcaaaaatttgatcaaatctccttgtaatctctttcaacctgttgc-aacgtcaatgtgaaacgcaat 29608312  T
Q  118 gttcaatgggttgaaagaggacgagcccctaagtcaagcggaacaaatgaaacattgatcaagaatatcgtggagcac---gtaaactgcatccttgaac 214  Q
    |||| | |||||||||||||||| || |||||||  || | |   |||| | ||||||||||||||||| | ||||||   ||||||||||||||||||     
T  29608311 gttctaggggttgaaagaggacg-gctcctaagttgagtgaattgaatggatcattgatcaagaatatcatcgagcactacgtaaactgcatccttgaat 29608213  T
Q  215 tgttgtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaagaacggccttgattat 288  Q
    |||||||||||||||||||||||||| |||||||| |||||||||| | |||||||||||| ||||||||||||    
T  29608212 tgttgtagccatacctttatagagccatctgtgatttgtttgtgctgagcatcttcaagaagggccttgattat 29608139  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 29614380 - 29614299
Alignment:
Q  207 ccttgaactgttgtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaagaacggccttgattat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29614380 ccttgaactgttgtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaagaacggccttgattat 29614299  T

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Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 30476599 - 30476866
Alignment:
Q  18 caccctctcgtagaagaaacttgtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgccaacatcaatgtgaaacacaat 117  Q
    |||||||||||| |||||||||||  |||||||||| ||||||||||||||||||| |||| |||||||| || ||||| |  |||  | ||||||||||    
T  30476599 caccctctcgtaaaagaaacttgtctttactttcagcaatttgatcgaatctccttgtaatttctttcaaccttttgccgatgtcacggcgaaacacaat 30476698  T
Q  118 gttcaatgggttgaaagaggacgagcccctaagtcaagcggaacaaatgaaacattgatcaagaatatcgtggagcacgtaaactgcatccttgaactgt 217  Q
    ||||  | |||||||| |||||||| |  |||||| |   ||   |||| |||||| |||||||||||| |  ||||| || || ||||| ||||  |||    
T  30476699 gttctttaggttgaaacaggacgaggctttaagtctactagattcaatggaacattcatcaagaatatcatcaagcacatatacagcatctttgagttgt 30476798  T
Q  218 tgtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaagaacggccttgat 285  Q
    || ||||||||||| ||||||| ||||||||  ||||| |||||| ||||||||||||| ||||||||    
T  30476799 tggagccataccttaatagagcggtctgtgacctgtttctgctcagcatcttcaagaacagccttgat 30476866  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 202 - 285
Target Start/End: Complemental strand, 30520323 - 30520240
Alignment:
Q  202 tgcatccttgaactgttgtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaagaacggccttgat 285  Q
    |||||| ||||  ||||| ||||||||||||||||||| |||||| || ||||| | |||| ||||||||||||||||||||||    
T  30520323 tgcatctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctcagcatcttcaagaacggccttgat 30520240  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 202 - 285
Target Start/End: Complemental strand, 30560663 - 30560580
Alignment:
Q  202 tgcatccttgaactgttgtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaagaacggccttgat 285  Q
    |||||| ||||  ||||| ||||||||||||||||||| |||||| || ||||| | |||| ||||||||||||||||||||||    
T  30560663 tgcatctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctcagcatcttcaagaacggccttgat 30560580  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 285
Target Start/End: Original strand, 29873555 - 29873665
Alignment:
Q  175 atcaagaatatcgtggagcacgtaaactgcatccttgaactgttgtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaaga 274  Q
    |||||| ||||| | |||||| |||||  |||| ||||  ||||||||||||||||| ||||||| ||||||||  ||||| |  ||| |||||||||||    
T  29873555 atcaaggatatcatcgagcacataaacaacatctttgagttgttgtagccataccttaatagagcggtctgtgacttgtttcttttcagcatcttcaaga 29873654  T
Q  275 acggccttgat 285  Q
    || ||||||||    
T  29873655 acagccttgat 29873665  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 285
Target Start/End: Complemental strand, 30241118 - 30241008
Alignment:
Q  175 atcaagaatatcgtggagcacgtaaactgcatccttgaactgttgtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaaga 274  Q
    |||||| ||||| | |||||| |||||  |||| ||||  ||||| ||||||||||| ||||||| ||||||||  ||||| | |||| |||||||||||    
T  30241118 atcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccataccttaatagagcagtctgtgacttgtttcttctcagcatcttcaaga 30241019  T
Q  275 acggccttgat 285  Q
    ||||| |||||    
T  30241018 acggctttgat 30241008  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 29873399 - 29873476
Alignment:
Q  19 accctctcgtagaagaaacttgtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgcc 96  Q
    |||||| ||||||| |||||||| |||||| |||| ||| | ||| ||||||||| ||||||||||||| ||||||||    
T  29873399 accctcccgtagaaaaaacttgttcttactatcagcaatatcatccaatctccttgtaatctctttcaacctgttgcc 29873476  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 285
Target Start/End: Complemental strand, 17417393 - 17417283
Alignment:
Q  175 atcaagaatatcgtggagcacgtaaactgcatccttgaactgttgtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaaga 274  Q
    |||||||||||| |  ||||| |||||  |||| ||||  ||||| |||||||||||  ||||||  |||||||  ||||| |||||| |||||||||||    
T  17417393 atcaagaatatcatctagcacataaacaacatctttgagttgttgaagccataccttgttagagcgatctgtgacttgtttatgctcagcatcttcaaga 17417294  T
Q  275 acggccttgat 285  Q
    || ||||||||    
T  17417293 acagccttgat 17417283  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 285
Target Start/End: Original strand, 29854692 - 29854802
Alignment:
Q  175 atcaagaatatcgtggagcacgtaaactgcatccttgaactgttgtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaaga 274  Q
    |||||| ||||| | |||||| ||||| ||||| ||||  ||||||||||||||||| ||||||  ||||||||  ||||| |  ||| |||||||||||    
T  29854692 atcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccataccttaatagagtggtctgtgacttgtttcttttcagcatcttcaaga 29854791  T
Q  275 acggccttgat 285  Q
    || || |||||    
T  29854792 acagcattgat 29854802  T

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Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 281
Target Start/End: Original strand, 30401306 - 30401564
Alignment:
Q  23 tctcgtagaagaaacttgtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgccaacatcaatgtgaaacacaatgttca 122  Q
    |||||||||||||| |||| |||| | |||| ||| | ||| ||||| ||| ||||||||||||| |||||||| |  | |  | ||||||| ||||||     
T  30401306 tctcgtagaagaaatttgttcttaatatcagcaatatcatccaatcttcttgtaatctctttcaacctgttgccgatctgacggcgaaacacgatgttct 30401405  T
Q  123 atgggttgaaagaggacgagcccctaagtcaagcggaacaaatgaaacattgatcaagaatatcgtggagcacgtaaactgcatccttgaactgttgtag 222  Q
     ||||||||||||| | ||||| | ||||| ||| ||    ||  |||| | |||||| ||||| | |||||| ||||| ||||| ||||  ||||| ||    
T  30401406 ttgggttgaaagagaatgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagcacataaacagcatctttgagttgttggag 30401505  T
Q  223 ccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaagaacggcct 281  Q
    ||||||||| ||| ||| |||| |||  ||| | | |||| ||||| ||||||| ||||    
T  30401506 ccataccttaatatagctgtctttgacttgtctcttctcagcatctacaagaacagcct 30401564  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 29854536 - 29854613
Alignment:
Q  19 accctctcgtagaagaaacttgtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgcc 96  Q
    |||||| ||||||| |||||||| |||||| |||| ||| | ||| ||| ||||| ||||||||||||| ||||||||    
T  29854536 accctcccgtagaaaaaacttgttcttactatcagcaatatcatccaatttccttgtaatctctttcaacctgttgcc 29854613  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 30207903 - 30207967
Alignment:
Q  175 atcaagaatatcgtggagcacgtaaactgcatccttgaactgttgtagccatacctttatagagc 239  Q
    |||||| ||||| | |||||| ||||| ||||| ||||  |||||||||||||||||||||||||    
T  30207903 atcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccatacctttatagagc 30207967  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 30207761 - 30207826
Alignment:
Q  33 gaaacttgtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgccaa 98  Q
    |||||||||  |||||||||| ||| | ||| || |||||| |||||||||||||||| |||||||    
T  30207761 gaaacttgtttttactttcagcaatatcatctaacctccttgtaatctctttcaatcttttgccaa 30207826  T

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Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 52353186 - 52353452
Alignment:
Q  19 accctctcgtagaagaaacttgtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgccaacatcaatgtgaaacacaatg 118  Q
    ||||||||||||||||||||||| ||| ||||||| || |||||||||||||||| |||| |||||||||||||| |||| ||||    ||||||||||     
T  52353186 accctctcgtagaagaaacttgttcttcctttcagcaacttgatcgaatctccttgtaatttctttcaatctgtttccaatatcatgacgaaacacaata 52353285  T
Q  119 ttcaatgggttgaaagaggacgagcccctaagtcaagcggaacaaatgaaacattgatcaagaatatcgtggagcacgtaaactgcatccttgaactgtt 218  Q
    ||   ||| ||||| || ||  | ||| |||||| |   ||    ||  |||||| |||||| ||||| | ||| |||||||| ||||| ||||  || |    
T  52353286 ttttttggtttgaatgacgataaacccataagtcgactagatttgatcgaacattcatcaaggatatcatcgagaacgtaaacagcatctttgagttgct 52353385  T
Q  219 gtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaagaacggccttgat 285  Q
    | |||||||| || ||||||| ||||||||  ||||| |||||| ||||||||||||| ||||||||    
T  52353386 gaagccatactttaatagagcggtctgtgacttgtttctgctcagcatcttcaagaactgccttgat 52353452  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 25292829 - 25292566
Alignment:
Q  18 caccctctcgtagaagaaacttgtacttactttcagaaatttgatcgaatctccttctaatctctttcaatctgttgccaacatcaatgtgaaacacaat 117  Q
    |||||| ||| ||||||||||||| |||| || ||| ||| | ||| ||||||||| |||||||||||||  |||||||||  | |  ||||||||  ||    
T  25292829 caccctgtcgaagaagaaacttgttcttagttgcagcaatatcatccaatctccttgtaatctctttcaacttgttgccaatgtaatggtgaaacatgat 25292730  T
Q  118 gttcaatgggttgaaagaggacgagcccctaagtcaagcggaacaaatgaaacattgatcaagaatatcgtggagcacgtaaactgcatccttgaactgt 217  Q
    ||||  ||| ||||||||||| ||||| ||||||| |   ||    || || || | |||||| ||||| | |||||| || ||  |||| ||||  |||    
T  25292729 gttctttggtttgaaagaggatgagcctctaagtcgactagatttgatcaatcactcatcaaggatatcatcgagcacatatacaacatctttgagttgt 25292630  T
Q  218 tgtagccatacctttatagagccgtctgtgatatgtttgtgctcaacatcttcaagaacggcct 281  Q
    |||||||||||||| |||||||  |||||||  ||||| |||||| ||||||||||||| ||||    
T  25292629 tgtagccataccttaatagagcgatctgtgacttgtttctgctcagcatcttcaagaacagcct 25292566  T

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