View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2837_high_25 (Length: 297)

Name: NF2837_high_25
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2837_high_25
NF2837_high_25
[»] chr7 (17 HSPs)
chr7 (11-163)||(19104005-19104157)
chr7 (11-102)||(26190863-26190954)
chr7 (11-93)||(26154810-26154892)
chr7 (19-112)||(26184860-26184953)
chr7 (11-93)||(26178690-26178772)
chr7 (11-85)||(26301426-26301500)
chr7 (19-112)||(26082318-26082411)
chr7 (19-112)||(26106105-26106198)
chr7 (19-93)||(26242004-26242078)
chr7 (11-64)||(26203530-26203583)
chr7 (13-80)||(26186290-26186357)
chr7 (11-76)||(26128191-26128256)
chr7 (19-84)||(26250461-26250526)
chr7 (19-93)||(26297052-26297126)
chr7 (19-57)||(26207078-26207116)
chr7 (210-260)||(37820083-37820133)
chr7 (17-57)||(26223175-26223215)
[»] chr4 (1 HSPs)
chr4 (15-112)||(44902828-44902926)
[»] chr8 (1 HSPs)
chr8 (216-257)||(43925476-43925517)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 19104005 - 19104157
Alignment:
Q  11 cataggaatcatatggccaggagttggatatggaagaaaagttacatgaagttggttatgggattgttgagattccattgttgtttttgaaatctatgag 110  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19104005 cataggaatcatatggcctggagttggatatggaagaaaagttacatgaagttggttatgggattgttgagattccattgttgtttttgaaatctatgag 19104104  T
Q  111 gttgaagtttggttcaattcatgtgagttgatatttaagtatagtttctcttt 163  Q
    || ||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  19104105 gtggaagtttggttcaattcctgtgagttgatatttaagtctagtttctcttt 19104157  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 26190954 - 26190863
Alignment:
Q  11 cataggaatcatatggccaggagttggatatggaagaaaagttacatgaagttggttatgggattgttgagattccattgttgtttttgaaa 102  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||||||    
T  26190954 cataggaatcatatggccaggagatggaaatggaagaaaagttacatgaagtgggttatgggattgttgagatttcattattgcttttgaaa 26190863  T

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Target: chr7; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 26154892 - 26154810
Alignment:
Q  11 cataggaatcatatggccaggagttggatatggaagaaaagttacatgaagttggttatgggattgttgagattccattgttg 93  Q
    ||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26154892 cataggattcatatggccaggacttggatgtggaagaaaagttacatgaagttggttatgggattgttgagactccattgttg 26154810  T

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Target: chr7; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 26184953 - 26184860
Alignment:
Q  19 tcatatggccaggagttggatatggaagaaaagttacatgaagttggttatgggattgttgagattccattgttgtttttgaaatctatgaggt 112  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| ||| || |||||||||| ||||| ||||||||||||    
T  26184953 tcatatggccaggagttggatatggaacaaaaattacatgaagtttgttatgggattattgggagtccattgttgcttttggaatctatgaggt 26184860  T

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Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 26178772 - 26178690
Alignment:
Q  11 cataggaatcatatggccaggagttggatatggaagaaaagttacatgaagttggttatgggattgttgagattccattgttg 93  Q
    ||||||||||||||| |||||||||||| |||||||||||   |||||||||| |||||||||||||||||| ||||||||||    
T  26178772 cataggaatcatatgaccaggagttggaaatggaagaaaaacaacatgaagtttgttatgggattgttgagactccattgttg 26178690  T

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Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 26301500 - 26301426
Alignment:
Q  11 cataggaatcatatggccaggagttggatatggaagaaaagttacatgaagttggttatgggattgttgagattc 85  Q
    ||||||| ||||||| |||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||    
T  26301500 cataggattcatatgaccaggagttggaaatggaagaaaaattacatgaagttggttattggattgttgagattc 26301426  T

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Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 26082411 - 26082318
Alignment:
Q  19 tcatatggccaggagttggatatggaagaaaagttacatgaagttggttatgggattgttgagattccattgttgtttttgaaatctatgaggt 112  Q
    ||||||||||||||||||||||||||| |||| |||  |||||||||||||| ||||||||||| ||||||||||  || | ||||||||||||    
T  26082411 tcatatggccaggagttggatatggaacaaaaattatctgaagttggttatgagattgttgagactccattgttgggttaggaatctatgaggt 26082318  T

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Target: chr7; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 26106198 - 26106105
Alignment:
Q  19 tcatatggccaggagttggatatggaagaaaagttacatgaagttggttatgggattgttgagattccattgttgtttttgaaatctatgaggt 112  Q
    ||||||||||||||||||||||||||| |||| |||  |||||||||||||| ||||||||||| ||||||||||  || | ||||||||||||    
T  26106198 tcatatggccaggagttggatatggaacaaaaattatctgaagttggttatgagattgttgagactccattgttgggttaggaatctatgaggt 26106105  T

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Target: chr7; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 26242078 - 26242004
Alignment:
Q  19 tcatatggccaggagttggatatggaagaaaagttacatgaagttggttatgggattgttgagattccattgttg 93  Q
    |||||||||||  || ||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||    
T  26242078 tcatatggccaatagctggatatggaagaaaaacaacatgaagtttgttatgggattgttgagattccattgttg 26242004  T

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Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 26203583 - 26203530
Alignment:
Q  11 cataggaatcatatggccaggagttggatatggaagaaaagttacatgaagttg 64  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  26203583 cataggaatcatatggccaggagttggaaatggaagaaaagttacatgcagttg 26203530  T

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Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 26186357 - 26186290
Alignment:
Q  13 taggaatcatatggccaggagttggatatggaagaaaagttacatgaagttggttatgggattgttga 80  Q
    ||||||||||||| |||||||||||| ||||||||||| ||| |||||||||||| || |||||||||    
T  26186357 taggaatcatatgaccaggagttggaaatggaagaaaaattatatgaagttggttgtgagattgttga 26186290  T

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Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 26128256 - 26128191
Alignment:
Q  11 cataggaatcatatggccaggagttggatatggaagaaaagttacatgaagttggttatgggattg 76  Q
    ||||||| |||||||||||||| ||||||||| |||||||   |||||||||||||||||| ||||    
T  26128256 cataggattcatatggccaggacttggatatgaaagaaaaacaacatgaagttggttatggaattg 26128191  T

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Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 26250526 - 26250461
Alignment:
Q  19 tcatatggccaggagttggatatggaagaaaagttacatgaagttggttatgggattgttgagatt 84  Q
    ||||||| |||| || ||||||||||||||||   |||||||||||||||| ||||||||||||||    
T  26250526 tcatatgaccagcagatggatatggaagaaaaacaacatgaagttggttattggattgttgagatt 26250461  T

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Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 26297126 - 26297052
Alignment:
Q  19 tcatatggccaggagttggatatggaagaaaagttacatgaagttggttatgggattgttgagattccattgttg 93  Q
    ||||||| |||| || |||||||||||||||    |||||||||| ||||| |||||||||||| ||||||||||    
T  26297126 tcatatgaccagcagatggatatggaagaaagacaacatgaagtttgttattggattgttgagactccattgttg 26297052  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 26207116 - 26207078
Alignment:
Q  19 tcatatggccaggagttggatatggaagaaaagttacat 57  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  26207116 tcatatggccaggagttggatatggtagaaaagtaacat 26207078  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 37820133 - 37820083
Alignment:
Q  210 tgacatttgtgattacattaaattatgttattcttttaaaatcttatcaat 260  Q
    ||||| ||| |||||||||||||||||||||| ||| ||||| ||||||||    
T  37820133 tgacacttgcgattacattaaattatgttattttttcaaaattttatcaat 37820083  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 26223215 - 26223175
Alignment:
Q  17 aatcatatggccaggagttggatatggaagaaaagttacat 57  Q
    ||||||||| |||||||||||| ||||||||||||| ||||    
T  26223215 aatcatatgaccaggagttggaaatggaagaaaagtgacat 26223175  T

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Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 44902926 - 44902828
Alignment:
Q  15 ggaatcatatggccaggagttggatatggaagaaaagttacatgaagttggttatgggattgttgagattccattg-ttgtttttgaaatctatgaggt 112  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||| ||||||| ||| ||||||||||| ||||||    
T  44902926 ggaatcatatggccaggagttggatatggaagaaaaactacatgaagttggttattggattgttgagaatccattgtttgcttttgaaatctttgaggt 44902828  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 43925517 - 43925476
Alignment:
Q  216 ttgtgattacattaaattatgttattcttttaaaatcttatc 257  Q
    ||||||||| |||||||||||||||| ||||||||| |||||    
T  43925517 ttgtgattaaattaaattatgttatttttttaaaattttatc 43925476  T

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