View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2837_high_3 (Length: 673)
Name: NF2837_high_3
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 634; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 7 - 656
Target Start/End: Complemental strand, 6977667 - 6977018
Alignment:
| Q |
7 |
gtgagaagaaacgtgtgcataagaaggacgatgataaagagaatgtgaatcaagggtcattggagaaagaggaagaaggtgaaaaagagttggaagataa |
106 |
Q |
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| T |
6977667 |
gtgaaaagaaacgtgtgcataagaaggacgataataaagagaatgtgaatcaagggtcattggagaaagaggaagaaggtgaaaaagagttggaagataa |
6977568 |
T |
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| Q |
107 |
agaagaaggattggatcatgagagtgaagttgatttggattctgatgttgttggtggtgatgattcagctgaatctgttgatgaagattctgagatatcg |
206 |
Q |
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| T |
6977567 |
agaagaaggattggatcatgagagtgaagttgatttggattctgatgttgttggtggtgatgattcagctgaatctgttgatgaagattctgagatatcg |
6977468 |
T |
|
| Q |
207 |
gaagagttaaagaaaacaaagaagggaaaagtgaaaggacctttgtttgaatcaaatgttaactatagatggaaaatgtgcaatactagaagcaagcata |
306 |
Q |
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| T |
6977467 |
gaagagttaaagaaaacaaagaagggaaaagtgaaaggacctttgtttgaatcaaatgttaactatagatggaaaatgtgcaatactagaagcaagcata |
6977368 |
T |
|
| Q |
307 |
actatattccttgcattgatattgaagtaggtggtggaaaggtgcagtaccggcatacggagaggagttgtccgaggatgcccttcacgtgtatggttcc |
406 |
Q |
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| T |
6977367 |
actatattccttgcattgatattgaagtaggtggtggaaaggtgcagtaccggcatacggagaggagttgtccgaggatgcccttcacgtgtatggttcc |
6977268 |
T |
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| Q |
407 |
tcttcctcttgaagggtatgattctccggtgccgtggcctgagagcaaaatgaaggtatatgaaatgtatattatgtttaactgtttaaggtctagtttg |
506 |
Q |
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| T |
6977267 |
ccttcctcttgaagggtatgattctccggtgccgtggcctgagagcaaaatgaaggtatatgaaatgtatattatgtttaactgtttaaggtctagtttg |
6977168 |
T |
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| Q |
507 |
gattagcttttagattgttagaggttatgagttgatgatttttcacttgtgaaataatccatataagcttatagtatggagaatttagggcatgtttgaa |
606 |
Q |
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| T |
6977167 |
tattagcttttagattgttagaggttatgagttgatgatttttcacttgtgaaataatccatataagcttatagtatggagaatttagggcatgtttgaa |
6977068 |
T |
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| Q |
607 |
ttagattatttgagcttatttattagcatgagaacttgtgaggctgtttg |
656 |
Q |
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| T |
6977067 |
ttagattatttgagcttatttattagcatgagaacttgtgaggctgtttg |
6977018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 645
Target Start/End: Original strand, 35378440 - 35378497
Alignment:
| Q |
588 |
aatttagggcatgtttgaattagattatttgagcttatttattagcatgagaacttgt |
645 |
Q |
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| T |
35378440 |
aatttagggcatgtttggattggcttatttgagcttatataatagcataagcacttgt |
35378497 |
T |
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