View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2837_high_30 (Length: 276)
Name: NF2837_high_30
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 37024626 - 37024402
Alignment:
| Q |
16 |
aaaatgatggttataccgtgatgaaatttcgctgaataagacggtcaataatgttcaaaagaatgtctttagagtactcaggatgaccttgaattcccat |
115 |
Q |
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| T |
37024626 |
aaaatgatggttataccgtgatgaaatttcgctgaataagacggtcaataatgttcaaaaggatgtctttagagtactcaggatgaccttgaattcccat |
37024527 |
T |
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| Q |
116 |
aatgtgatctccatatctaaacatctcaattccagtcttatctgatttagcaatcacttcagccttggcaggtagctctcttaactaattaattaattaa |
215 |
Q |
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| T |
37024526 |
aatgtgatctccatatctaaacatctcaattccagtcttatctgatttagcaatcacttcagccttggcaggtagctctcttaacta---aatcatttaa |
37024430 |
T |
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| Q |
216 |
atccaaaaggagaaatatatcaacaactaa |
245 |
Q |
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| T |
37024429 |
ttc--aaatgagaaatatatcaacaactaa |
37024402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 71 - 194
Target Start/End: Original strand, 35902362 - 35902485
Alignment:
| Q |
71 |
caaaagaatgtctttagagtactcaggatgaccttgaattcccataatgtgatctccatatctaaacatctcaattccagtcttatctgatttagcaatc |
170 |
Q |
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| T |
35902362 |
caaaagaatatctttagagtactctggatgaccttggattcccataatatgatctccatatttaaacatctcaattccagttttatctgacctagcaatt |
35902461 |
T |
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| Q |
171 |
acttcagccttggcaggtagctct |
194 |
Q |
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| T |
35902462 |
acctctgcctttgcaggtaactct |
35902485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 2051994 - 2052037
Alignment:
| Q |
117 |
atgtgatctccatatctaaacatctcaattccagtcttatctga |
160 |
Q |
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| T |
2051994 |
atgtgatttccatacctaaacatctcaattccagtcttttctga |
2052037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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