View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2837_high_38 (Length: 250)
Name: NF2837_high_38
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_high_38 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 121 - 250
Target Start/End: Complemental strand, 36936392 - 36936263
Alignment:
| Q |
121 |
ggtcagaatcccaaacgcccaactcctaggaaagatatacttctccagtctaaatccgggtagaaatgtcctatcatgtttcaacccgacactttactat |
220 |
Q |
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| T |
36936392 |
ggtcagaatcccaaatgcccaactcctaggaaagatatacttctccagtctaaatccgggtagaaatgtcctatcatgtttcaacctgacactttactat |
36936293 |
T |
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| Q |
221 |
tttatctgttttatttctcttttggtggtc |
250 |
Q |
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| T |
36936292 |
tttatctgttttatttctcttttggtggtc |
36936263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 36942527 - 36942413
Alignment:
| Q |
11 |
cacagattaaacaccacaatgcccagcgatcgccatcacaaacaacaacctctcaaccacatatcctcattgaaaacctccctctctccattatcaaagc |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36942527 |
cacagattaaacaccacaatgcccagcgatcgccatcacaaacaacaacctctcaaccacatatcctcattgaaaacatccctctctccattatcaaagc |
36942428 |
T |
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| Q |
111 |
tacactcatgggtca |
125 |
Q |
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||||||||||||||| |
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| T |
36942427 |
tacactcatgggtca |
36942413 |
T |
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