View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2837_high_5 (Length: 611)
Name: NF2837_high_5
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 7 - 527
Target Start/End: Complemental strand, 26410922 - 26410402
Alignment:
| Q |
7 |
acatcatcaacagtataaaccatattaacatcataagcacctttctcagccaacattggttcagaaggaagaatcaaaggaaaagaatgagaatcagtta |
106 |
Q |
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| T |
26410922 |
acatcatcaacagtataaaccatatcaacatcataagcacctttctcagccaacattggttcagaaggaagaatcaaaggaaaagaatgagaatcagtta |
26410823 |
T |
|
| Q |
107 |
catgccaatgaaacacattcaacttattcatactcatagcttcaatagttcttaacaaatccttcactggatagtagtttcttgaagtatctaacatgat |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26410822 |
catgccaatgaaacacattcaacttattcatactcatagcttcaatagttcttaacaaatccttcactggatagtagtttcttgaagtatctaacataat |
26410723 |
T |
|
| Q |
207 |
accgcgatgaccgaacaacggcgcgtcgttaacacgcacgttcacagctacgcgcgttgggtttccccatgcaagctgtgagaatgtttctaaaccatgc |
306 |
Q |
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| T |
26410722 |
accgcgatgaccgaacaacggcgcgtcgttaacacgcacgttcacagccacgcgcgttgggtttccccatgcaagctgtgagaatgtttctaaaccatgc |
26410623 |
T |
|
| Q |
307 |
atggctccccatgaagttacggcggttaaggtggcggtgggagttgtgattattaacgtgtaggattcgtcggtggcgtggtttagttctgtgtttgggt |
406 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26410622 |
atggctccccatgaagttacagcggttaaggtggcggtgggagttgtgattattaacgtgtaggattcgtcggtggcgtggtttagttctgtgtttgggt |
26410523 |
T |
|
| Q |
407 |
ttgttatggttattgttagggtttgaagaggtggtagattgtttgagaggtttgtttttggtgggattaagggatggttgtgttctgttttgatgaggtt |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26410522 |
ttgttatggttattgttagggtttgaagaggtggtagattgtttgagaggtttgtttttggtgggattaagggatggttgtgttctgttttgatgaggtt |
26410423 |
T |
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| Q |
507 |
tgtgtagcgggatatggcggc |
527 |
Q |
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||||||||| ||||||||||| |
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| T |
26410422 |
tgtgtagcgagatatggcggc |
26410402 |
T |
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