View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2837_high_50 (Length: 237)
Name: NF2837_high_50
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_high_50 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1496161 - 1495940
Alignment:
| Q |
1 |
caatatcaatgagacaagaacatcactgttcacattactgcaatttcgcaaattgatctcttgtagttgtgcacagttctctaccacatgcctaactccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1496161 |
caatatcaatgagacaagaacatcactgttcacattactgcaatttcgcaaattgatctcttgtagttgtgcacagttctctaccacatgcctaactccc |
1496062 |
T |
|
| Q |
101 |
ttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagattacaaagagtgcttcatcgttaacttttgtcattg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1496061 |
ttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagattacaaagagtgcgtcatcgttaacttttgtcattg |
1495962 |
T |
|
| Q |
201 |
acaaatccaacaccttgaggtt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1495961 |
acaaatccaacaccttgaggtt |
1495940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 1517741 - 1517520
Alignment:
| Q |
1 |
caatatcaatgagacaagaacatcactgttcacatta---ctgcaatttcgcaaattgatctcttgtagttgtgcacagttctctaccacatgcctaact |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || || ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1517741 |
caatatcaatgagacaagaacatcactgttcacaataatactacaatttctcaaattgatcttttgtagttgtgcacagttctctaccacatgcctaact |
1517642 |
T |
|
| Q |
98 |
cccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagattacaaagagtgcttcatcgttaacttttgtca |
197 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
1517641 |
cccttctctgtgacatcatgacaattttccagtaatagtttcaaaattccacgacaattctttgagattacaaagagtgcgtcatcgttaactcttgtca |
1517542 |
T |
|
| Q |
198 |
ttgacaaatccaacaccttgag |
219 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
1517541 |
ttgacaaattcaacaccttgag |
1517520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 1534233 - 1534011
Alignment:
| Q |
1 |
caatatcaatgagacaagaacatcactgttcacattactgcaatttcgcaaattgatctcttgtagttgtgcacagttctctaccacatgcctaactccc |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||| |||| | ||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
1534233 |
caatatcaatgaggcaagaacatcacttttcacattacaacaatatatcaaatcgatctcttgtagttgtgcacagttctctaccacatgcttaactccc |
1534134 |
T |
|
| Q |
101 |
ttctctgtga----tatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagattacaaagagtgcttcatcgttaacttttgtc |
196 |
Q |
| |
|
|||||||||| ||||| ||||| | |||| || |||||||||||||||||||| |||| ||||||||||||||||| || ||||||||| |||| |
|
|
| T |
1534133 |
ttctctgtgacatgcatcatcacaatcgttcagtgatagttgcaaaattccacgacaagtcttcgagattacaaagagtgcgtcgtcgttaactcttgtg |
1534034 |
T |
|
| Q |
197 |
attgacaaatccaacaccttgag |
219 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
1534033 |
cttgacaattccaacaccttgag |
1534011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 1530098 - 1530063
Alignment:
| Q |
5 |
atcaatgagacaagaacatcactgttcacattactg |
40 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1530098 |
atcaatgaggcaagaacatcactgttcacattactg |
1530063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 195
Target Start/End: Complemental strand, 1489555 - 1489409
Alignment:
| Q |
49 |
caaattgatctcttgtagttgtgcacagttctctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattcca |
148 |
Q |
| |
|
||||||||||||| ||||||||| || || |||| ||||||| | |||||||||||||||| || | ||| ||||||||| ||||||||| ||| |
|
|
| T |
1489555 |
caaattgatctctcttagttgtgcgcatttttctagcacatgcttcactcccttctctgtgacattaaaacacccttccagtaagagttgcaaaagccca |
1489456 |
T |
|
| Q |
149 |
cgacaattctttgagattacaaagagtgcttcatcgttaacttttgt |
195 |
Q |
| |
|
|| ||| | ||||||||||| | |||| ||| | |||||| ||||| |
|
|
| T |
1489455 |
cggcaacacattgagattacacacagtgtttcgttgttaacatttgt |
1489409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 163
Target Start/End: Original strand, 640845 - 640934
Alignment:
| Q |
74 |
cagttctctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgag |
163 |
Q |
| |
|
||||| ||||||||||| | |||||||||| ||| | || |||||||| ||||||||| | ||||||| ||||| |||||||||||| |
|
|
| T |
640845 |
cagttttctaccacatgattcactcccttctttgttacataatgacaatcttccagtaacagatgcaaaagaccacggcaattctttgag |
640934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 162
Target Start/End: Complemental strand, 7226052 - 7225964
Alignment:
| Q |
74 |
cagttctctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttga |
162 |
Q |
| |
|
||||| |||||||| ||| | | ||||||||| |||| ||| |||| ||||||||||| ||||||||| ||||| |||| ||||||| |
|
|
| T |
7226052 |
cagttttctaccacgtgcttcaatcccttctcggtgacctcaaaacaactttccagtaatagttgcaaaagtccacaacaactctttga |
7225964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 215
Target Start/End: Complemental strand, 13470901 - 13470760
Alignment:
| Q |
74 |
cagttctctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagattacaaaga |
173 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||||| || ||||||| ||| |||||| ||||||||| |||| ||||||||||||||| | | ||| |
|
|
| T |
13470901 |
cagttctctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattctttgagatcatataga |
13470802 |
T |
|
| Q |
174 |
gtgcttcatcgttaacttttgtcattgacaaatccaacacct |
215 |
Q |
| |
|
||| || ||| ||||| ||||| ||||||| | |||||||| |
|
|
| T |
13470801 |
gtgttttatcattaacctttgtatttgacaagttcaacacct |
13470760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 51113944 - 51113841
Alignment:
| Q |
80 |
tctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagattacaaagagtgctt |
179 |
Q |
| |
|
|||||||||||| | |||||||||||||||| || | |||||||| |||||| ||||||||| |||| |||| |||| ||||| ||| |||||| || |
|
|
| T |
51113944 |
tctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactcttcgagatcacatagagtgttt |
51113845 |
T |
|
| Q |
180 |
catc |
183 |
Q |
| |
|
|||| |
|
|
| T |
51113844 |
catc |
51113841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 215
Target Start/End: Complemental strand, 51764609 - 51764468
Alignment:
| Q |
74 |
cagttctctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagattacaaaga |
173 |
Q |
| |
|
||||| || |||||||| | ||||||||||| ||| || || ||||| |||||||||| ||||||||| || | ||||||||||||||| || ||| |
|
|
| T |
51764609 |
cagttttcaaccacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattctttgagatcgcataga |
51764510 |
T |
|
| Q |
174 |
gtgcttcatcgttaacttttgtcattgacaaatccaacacct |
215 |
Q |
| |
|
||| || ||| | ||||||||| | |||||| || ||||||| |
|
|
| T |
51764509 |
gtgttttatcatcaacttttgtaaatgacaagtctaacacct |
51764468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 514888 - 514786
Alignment:
| Q |
83 |
accacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagattacaaagagtgcttcat |
182 |
Q |
| |
|
||||||||| | |||||| ||||||||||| | | |||||||| ||||||| ||||||||| |||| ||| |||| ||||| ||| |||||||||| |
|
|
| T |
514888 |
accacatgcttcactcccgtctctgtgataccttcacaattttgcagtaatagttgcaaaagcccacagcaactcttcgagatcacatgaagtgcttcat |
514789 |
T |
|
| Q |
183 |
cgt |
185 |
Q |
| |
|
||| |
|
|
| T |
514788 |
cgt |
514786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 215
Target Start/End: Complemental strand, 45245279 - 45245113
Alignment:
| Q |
49 |
caaattgatctcttgtagttgtgcacagttctctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattcca |
148 |
Q |
| |
|
||||||||||||| ||||||| || || ||||||||||| | |||||||| ||||||| || || ||| |||| || |||| ||||||||| ||| |
|
|
| T |
45245279 |
caaattgatctctgtaagttgtgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagccca |
45245180 |
T |
|
| Q |
149 |
cgacaattctttgagattacaaagagtgcttcatcgttaacttttgtcattgacaaatccaacacct |
215 |
Q |
| |
|
|||||| |||||||||| ||| ||||| |||||| | ||| ||||| |||||||| |||||||| |
|
|
| T |
45245179 |
cgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacct |
45245113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 19632369 - 19632466
Alignment:
| Q |
74 |
cagttctctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagattacaaa |
171 |
Q |
| |
|
||||| |||||||| || | ||||||||||||||||||| | |||||||| |||||| ||||||||| |||| ||||||||||||||| ||||| |
|
|
| T |
19632369 |
cagttttctaccacgtgtttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttgagatcacaaa |
19632466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 9411292 - 9411376
Alignment:
| Q |
81 |
ctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagat |
165 |
Q |
| |
|
||||||||||| | |||||||| ||| ||| || |||||| || |||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
9411292 |
ctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagat |
9411376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 215
Target Start/End: Original strand, 6415886 - 6416037
Alignment:
| Q |
64 |
tagttgtgcacagttctctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgag |
163 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||||| ||||||| || || |||| ||| |||||| ||||||||| || | ||||||||||||| |
|
|
| T |
6415886 |
tagttgtgtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgag |
6415985 |
T |
|
| Q |
164 |
attacaaagagtgcttcatcgttaacttttgtcattgacaaatccaacacct |
215 |
Q |
| |
|
|| ||| |||| | || ||| ||||| ||||| ||||||| | |||||||| |
|
|
| T |
6415986 |
atcacatagagagttttatcattaacctttgtatttgacaagttcaacacct |
6416037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 195
Target Start/End: Complemental strand, 18315451 - 18315321
Alignment:
| Q |
65 |
agttgtgcacagttctctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgaga |
164 |
Q |
| |
|
||||||| ||||| |||||||||| | | |||| |||||||||| |||| ||| ||||| ||| ||||||||| | ||||||| ||||||||| |
|
|
| T |
18315451 |
agttgtgtgcagttttctaccacatacttttctcctttctctgtgacatcacaacagcgttccaataacagttgcaaaagcctacgacaactctttgaga |
18315352 |
T |
|
| Q |
165 |
ttacaaagagtgcttcatcgttaacttttgt |
195 |
Q |
| |
|
| ||| ||||||||||||| | ||||||||| |
|
|
| T |
18315351 |
tcacatagagtgcttcatcatcaacttttgt |
18315321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 34936312 - 34936191
Alignment:
| Q |
94 |
aactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagattacaaagagtgcttcatcgttaactttt |
193 |
Q |
| |
|
|||||||||||| |||| |||| |||||||| |||||| ||||||||| ||||||||| |||||| ||| || |||||| || ||| | |||| || |
|
|
| T |
34936312 |
aactcccttctccgtgacatcacaacaattttgaagtaatagttgcaaaagcccacgacaactctttgcgatggcatagagtgttttatcatcaactctt |
34936213 |
T |
|
| Q |
194 |
gtcattgacaaatccaacacct |
215 |
Q |
| |
|
|| |||||| |||||||||| |
|
|
| T |
34936212 |
gtatatgacaagtccaacacct |
34936191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 7554418 - 7554527
Alignment:
| Q |
74 |
cagttctctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagattacaaaga |
173 |
Q |
| |
|
||||| |||||||||||| | |||||||| ||||||| || || ||| || |||||| |||| |||| ||||| |||| |||||||||| | | ||| |
|
|
| T |
7554418 |
cagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtccaccacaactctttgagatcatataga |
7554517 |
T |
|
| Q |
174 |
gtgcttcatc |
183 |
Q |
| |
|
|||||||||| |
|
|
| T |
7554518 |
gtgcttcatc |
7554527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 12845530 - 12845578
Alignment:
| Q |
81 |
ctaccacatgcctaactcccttctctgtgatatcatgacaattttccag |
129 |
Q |
| |
|
||||||| ||||| |||||||||||||| | ||||| |||||||||||| |
|
|
| T |
12845530 |
ctaccacttgcctcactcccttctctgtaacatcattacaattttccag |
12845578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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