View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2837_high_53 (Length: 208)
Name: NF2837_high_53
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_high_53 |
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Alignment Details
Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 40735983 - 40736027
Alignment:
| Q |
17 |
aagatctgcatttttatgtacacttataagattgaactcgcaatg |
61 |
Q |
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| T |
40735983 |
aagatctgcatttttatgtacacttataagattgaactcgcaatg |
40736027 |
T |
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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 40736107 - 40736158
Alignment:
| Q |
140 |
tgcatttggtcatttaatttgattaagcaagttagtcattttcatccatttt |
191 |
Q |
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| T |
40736107 |
tgcatttggtcatttaatttgattaaataagttagtcattttcatccatttt |
40736158 |
T |
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