View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2837_high_6 (Length: 604)

Name: NF2837_high_6
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2837_high_6
NF2837_high_6
[»] chr4 (14 HSPs)
chr4 (8-568)||(18360956-18361510)
chr4 (8-568)||(36601417-36601973)
chr4 (307-564)||(36635825-36636080)
chr4 (205-424)||(36642382-36642602)
chr4 (213-551)||(35969276-35969610)
chr4 (307-424)||(36630394-36630511)
chr4 (307-422)||(36664757-36664872)
chr4 (307-445)||(36627101-36627239)
chr4 (311-399)||(18365324-18365412)
chr4 (311-399)||(36597512-36597601)
chr4 (307-422)||(18084140-18084252)
chr4 (201-409)||(36910648-36910861)
chr4 (469-557)||(28125762-28125847)
chr4 (85-131)||(36630696-36630742)
[»] chr1 (1 HSPs)
chr1 (218-421)||(42601686-42601890)
[»] chr8 (1 HSPs)
chr8 (307-423)||(35336841-35336957)
[»] chr6 (3 HSPs)
chr6 (307-421)||(33839176-33839290)
chr6 (307-421)||(33843092-33843206)
chr6 (482-550)||(33839361-33839426)
[»] chr5 (4 HSPs)
chr5 (462-565)||(19657374-19657474)
chr5 (462-565)||(19674218-19674318)
chr5 (307-356)||(19657227-19657276)
chr5 (307-356)||(19674071-19674120)


Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 8 - 568
Target Start/End: Complemental strand, 18361510 - 18360956
Alignment:
Q  8 tgagatgaagatcgagaggtgcggcagaggcaggcgcagcggtagaagcaagtgcggagaactgcgaaagataataattgataatatttgcaccctttat 107  Q
    |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  18361510 tgagatgaagatcgggaggtgtggaagaggcaggcgcagcggtagaagcaagtgcggagaactgcgaaagataat---tgataatatttgcaccctttat 18361414  T
Q  108 agattcctcaacctgtttagtaataataaccaatcacaaattcttatggtcgtttcattaaattagctaagctgagattcgagnnnnnnnnnnttaacac 207  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||          |||||||    
T  18361413 agattcctcaacctgtttagtaataa---ccaatcacaaattcttatggttgtttcattaaattagctaagctgagattcgagaaaaaaaaa-ttaacac 18361318  T
Q  208 actcagctcccttatggttttcaaataactacttgcttaagattaaaccaattcgaataatctgttaagatgttaacttcggccgtcggtgannnnnnn- 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||            
T  18361317 actcagctcccttatggttttcaaataactacttgcttaagattaaatcaattcgaataatctgttaagatgttaactttggccgtcggtgaattttttt 18361218  T
Q  307 gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaac 406  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18361217 gcaagaagtcaactattccatcaggtatgggagatggtttcaaacttgcttcaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaac 18361118  T
Q  407 tttctttaacatggcatcgctcactatgttgggtaatcccattggatactaggtagttccagttttatttctgtagacttcaagttacacaaagaagata 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18361117 tttctttaacatggcatcgctcactatgttgggtaatcccattggatgctaggtagttccagttttatttctgtagacttcaagttacacaaagaagata 18361018  T
Q  507 gcttaataacctctagtaaataaggaactaaggagagtatctaaagaatgaggaatgagagt 568  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18361017 gcttaataacctctagtaaataaggaactaaggagagtatctaaagaatgaggattgagagt 18360956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 8 - 568
Target Start/End: Original strand, 36601417 - 36601973
Alignment:
Q  8 tgagatgaagatcgagaggtgcggcagaggcaggcgcagcggtagaagcaagtgcggagaactgcgaaagataataattgataatatttgcaccctttat 107  Q
    |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  36601417 tgagatgaagatcgggaggtgtggaagaggcaggcgcagcggtagaagcaagtgcggagaactgcgaaagataat---tgataatatttgcaccctttat 36601513  T
Q  108 agattcctcaacctgtttagtaataataaccaatcacaaattcttatggtcgtttcattaaattagctaagctgagattcgagnnnnnnnnnnttaacac 207  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||          | |||||    
T  36601514 agattcctcaacctgtttagtaataa---ccaatcacaaattcttatggttgtttcattaaattagctaagctgagattcgagaaaaaaaaattaaacac 36601610  T
Q  208 actcagctcccttatggttttcaaataactacttgcttaagattaaaccaattcgaataatctgttaagatgttaacttcggccgtcggtgannnnnnn- 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||            
T  36601611 actcagctcccttatggttttcaaataactacttgcttaagattaaatcaattcgaataatctgttaagatgttaactttggccgtcggtgaattttttt 36601710  T
Q  307 -gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaa 405  Q
     ||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36601711 tgcaagaagtcaactattccatcaggtatgggagatggtttcaaacttgcttcaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaa 36601810  T
Q  406 ctttctttaacatggcatcgctcactatgttgggtaatcccattggatactaggtagttccagttttatttctgtagacttcaagttacacaaagaagat 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36601811 ctttctttaacatggcatcgctcactatgttgggtaatcccattggatgctaggtagttccagttttatttctgtagacttcaagttacacaaagaagat 36601910  T
Q  506 agcttaataacctctagtaaataaggaactaaggagagtatctaaagaatgaggaatgagagt 568  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36601911 agcttaataacctctagtaaataaggaactaaggagagtatctaaagaatgaggattgagagt 36601973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 307 - 564
Target Start/End: Original strand, 36635825 - 36636080
Alignment:
Q  307 gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaac 406  Q
    ||||||| |||||||||||||||||||||||||||||||  |||| ||||||||| ||||||| |||||| ||||||||||||||||||||||||||| |    
T  36635825 gcaagaattcaactattccatcaggtatgggaggtggttccaaacgtgctttaaaagcctttcttaacttggcagcttctttacgtgacttggcagcagc 36635924  T
Q  407 tttctttaacatggcatcgctcactatgttgggtaatcccattgga-tactaggtagttccagttttatttctgtagacttcaagttacacaaagaagat 505  Q
    ||||||||||||||| ||  |||| | |||||||||| ||||| || |||||     |||||||||||||||  ||||||||||||||||||||||||      
T  36635925 tttctttaacatggcttctttcaccaggttgggtaatgccatttgattactacaggtttccagttttatttccatagacttcaagttacacaaagaaggc 36636024  T
Q  506 agcttaataacctctagtaaataaggaactaaggagagtatctaaagaatgaggaatga 564  Q
    ||||   ||||||||||||||| ||||||||| ||||| ||||||| ||| ||||||||    
T  36636025 agct---taacctctagtaaatcaggaactaatgagagaatctaaacaattaggaatga 36636080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 205 - 424
Target Start/End: Original strand, 36642382 - 36642602
Alignment:
Q  205 cacactcagctcccttatggttttcaaataactacttgcttaagattaaaccaattcgaataatctgttaagatgttaacttcggccgtcggtgannnnn 304  Q
    |||||||||||||||||||| ||| ||||||| || |||||||||||||| |||| ||| |||||||| |||||||||||||| || | ||||||         
T  36642382 cacactcagctcccttatggattttaaataacaacctgcttaagattaaaacaatccgagtaatctgtaaagatgttaacttccgcagacggtgagtttt 36642481  T
Q  305 nn-gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagc 403  Q
       |||||||||| |||||||||| |||||||| ||||||||  ||||  |||||||||| ||||| |||||||||| ||||||||| |||| |||||||    
T  36642482 gtcgcaagaagtctactattccattaggtatggcaggtggttccaaacgagctttaaatgtctttcttaacttagcaacttctttacttgacatggcagc 36642581  T
Q  404 aactttctttaacatggcatc 424  Q
    | |||||||||||| ||||||    
T  36642582 atctttctttaacaaggcatc 36642602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 213 - 551
Target Start/End: Complemental strand, 35969610 - 35969276
Alignment:
Q  213 gctcccttatggttttcaaataactacttgcttaagattaaaccaattcgaataatctgttaagatgttaacttcggccgtcggtgannnnnnn-gcaag 311  Q
    |||| |||||||||||||||||||||| | |||||||||||| ||||| || |||  ||||| |||||||||||| |||  ||||||        |||||    
T  35969610 gctcacttatggttttcaaataactacctccttaagattaaaacaatttgagtaaattgttaggatgttaacttccgccagcggtgagttttgtcgcaag 35969511  T
Q  312 aagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaactttct 411  Q
    || |||||||||||||| ||||||||||| ||||  |||| |||||||||||| |||  |||||| | |||||||||||  |||||||||||||||||||    
T  35969510 aaatcaactattccatctggtatgggaggaggttccaaacctgctttaaatgctttttgtaacttggtagcttctttactcgacttggcagcaactttct 35969411  T
Q  412 ttaacatggcatcgctcactatgttgggtaatccca-ttggatactaggtagttccagttttatttctgtagacttcaagttacacaaagaagatagctt 510  Q
    ||||||||||||   |||||| |  ||||||||||| |||  |   | |  |||||| |||||||||  | |||||||||||||||||||||   ||||     
T  35969410 ttaacatggcat---tcactacgcggggtaatcccagttgagtttgaagaggttccaattttatttccatcgacttcaagttacacaaagaatggagct- 35969315  T
Q  511 aataacctctagtaaataaggaactaaggagagtatctaaa 551  Q
       |||||||| || || ||||||||||||||| |||||||    
T  35969314 --caacctctaatatatcaggaactaaggagagaatctaaa 35969276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 307 - 424
Target Start/End: Complemental strand, 36630511 - 36630394
Alignment:
Q  307 gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaac 406  Q
    |||||||||||||||||||||||||||||| ||||  ||  |||| ||||||||| ||||||| ||||||| | |||||||||| |||||| ||||||||    
T  36630511 gcaagaagtcaactattccatcaggtatggcaggtaattctaaacctgctttaaacgcctttcttaacttatcggcttctttacttgacttagcagcaac 36630412  T
Q  407 tttctttaacatggcatc 424  Q
    ||||||||||||| ||||    
T  36630411 tttctttaacatgacatc 36630394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 307 - 422
Target Start/End: Original strand, 36664757 - 36664872
Alignment:
Q  307 gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaac 406  Q
    ||||||||||||| || || |||||||||| | ||||||  |||| |||||| |||||||||| |||||||||| |||||||||| |||||||||||| |    
T  36664757 gcaagaagtcaaccataccgtcaggtatggcacgtggttccaaacgtgctttgaatgcctttcttaacttagcaacttctttacgagacttggcagcagc 36664856  T
Q  407 tttctttaacatggca 422  Q
    ||||||||||||||||    
T  36664857 tttctttaacatggca 36664872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 307 - 445
Target Start/End: Original strand, 36627101 - 36627239
Alignment:
Q  307 gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaac 406  Q
    |||||||||  ||||||||||||||||||| |||||||||  ||| |||||||||||| |||| || ||| |||||||||||||||||  |||||  | |    
T  36627101 gcaagaagttgactattccatcaggtatggaaggtggtttccaacctgctttaaatgcttttcgtacctttgcagcttctttacgtgatgtggcaatagc 36627200  T
Q  407 tttctttaacatggcatcgctcactatgttgggtaatcc 445  Q
    | ||||||||||||||||  ||| ||||  |||||||||    
T  36627201 tctctttaacatggcatctttcaatatgaagggtaatcc 36627239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 311 - 399
Target Start/End: Complemental strand, 18365412 - 18365324
Alignment:
Q  311 gaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttgg 399  Q
    |||||||||||||||||||||||||||||||||||  ||||  || |||||||||||   ||||||||||||||||| | |||||||||    
T  18365412 gaagtcaactattccatcaggtatgggaggtggttgcaaaccagcattaaatgccttgtttaacttagcagcttcttcaggtgacttgg 18365324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 399
Target Start/End: Original strand, 36597512 - 36597601
Alignment:
Q  311 gaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaac-ttagcagcttctttacgtgacttgg 399  Q
    |||||||||||||||||||||||||||||||||||  ||||  || |||||||||||   |||| ||||||||||||| | |||||||||    
T  36597512 gaagtcaactattccatcaggtatgggaggtggttgcaaaccagcattaaatgccttgtttaactttagcagcttcttcaggtgacttgg 36597601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 422
Target Start/End: Complemental strand, 18084252 - 18084140
Alignment:
Q  307 gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaac 406  Q
    ||||||||||||| || || |||||||||| | ||||||  |||| |||||| |||||||||| |||||||||| | |||||||| ||| ||||||| |     
T  18084252 gcaagaagtcaaccataccgtcaggtatggcacgtggttccaaacgtgctttgaatgcctttcttaacttagcaac-tctttacgagac-tggcagc-ag 18084156  T
Q  407 tttctttaacatggca 422  Q
     |||||||||||||||    
T  18084155 nttctttaacatggca 18084140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 201 - 409
Target Start/End: Complemental strand, 36910861 - 36910648
Alignment:
Q  201 ttaacacactcagctcccttatggttttcaaataacta----cttgcttaagattaaaccaattcgaataatctgttaagatgttaacttcggccgtcgg 296  Q
    |||||||||||||||||| ||||||||| |||||||||    | ||||||||||||||  || |  | |||||||||  |||||||||||| || |  ||    
T  36910861 ttaacacactcagctcccatatggtttttaaataactagctacctgcttaagattaaaataaataaagtaatctgttgtgatgttaacttccgctgaggg 36910762  T
Q  297 tgannnnnnn-gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgac 395  Q
     ||        |||||||||||||||||||||||||||||| |||| |||  | || |  |||||||||||| | |||||||  |  ||||| | |||||    
T  36910761 cgagttttgtcgcaagaagtcaactattccatcaggtatggcaggtagttccatacgtcttttaaatgccttgcataacttaagaagttcttcatgtgac 36910662  T
Q  396 ttggcagcaacttt 409  Q
    ||||||||| ||||    
T  36910661 ttggcagcagcttt 36910648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 469 - 557
Target Start/End: Complemental strand, 28125847 - 28125762
Alignment:
Q  469 ttttatttctgtagacttcaagttacacaaagaagatagcttaataacctctagtaaataaggaactaaggagagtatctaaagaatga 557  Q
    |||||||||  | |||||||||| ||||||||||   |||||||   |||||||||||| ||||||||||||||| ||||||| |||||    
T  28125847 ttttatttccatcgacttcaagtaacacaaagaacggagcttaa---cctctagtaaatcaggaactaaggagagaatctaaacaatga 28125762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 36630742 - 36630696
Alignment:
Q  85 ttgataatatttgcaccctttatagattcctcaacctgtttagtaat 131  Q
    |||||||| ||  |||||||||||||||| |||||||||||||||||    
T  36630742 ttgataatcttctcaccctttatagattcttcaacctgtttagtaat 36630696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 218 - 421
Target Start/End: Original strand, 42601686 - 42601890
Alignment:
Q  218 cttatggttttcaaataactacttgcttaagattaaaccaattcgaataatctgttaagatgttaacttcggccgtcggtgannnnnnn-gcaagaagtc 316  Q
    ||||||||||| |||||||||| |||||||||| |||  || |||  |||||||||||||| ||||||||  ||| |||  |        ||||||| ||    
T  42601686 cttatggtttttaaataactacctgcttaagatcaaaagaactcgggtaatctgttaagattttaacttccaccgacggcaagttttgtcgcaagaaatc 42601785  T
Q  317 aactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaactttctttaac 416  Q
    |||||||||||| ||||||||||||||||| ||||  ||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  42601786 aactattccatcgggtatgggaggtggttttaaacccgctttaaattcctttcttaacttagcagcttctttacgtgacttggcagcagctttctttaac 42601885  T
Q  417 atggc 421  Q
    |||||    
T  42601886 atggc 42601890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 307 - 423
Target Start/End: Complemental strand, 35336957 - 35336841
Alignment:
Q  307 gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaac 406  Q
    |||||||||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||| |||||| |||||||| ||||  |||||||||||  |    
T  35336957 gcaagaagtcaactattccatcaggtatgggaggtggtctcaaacctgctttaaatgtctttcttaactttgcagcttcattacaggacttggcagccgc 35336858  T
Q  407 tttctttaacatggcat 423  Q
    |||||||||||||||||    
T  35336857 tttctttaacatggcat 35336841  T

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Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 307 - 421
Target Start/End: Original strand, 33839176 - 33839290
Alignment:
Q  307 gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaac 406  Q
    |||||||||| ||||||||||||||||||| ||||||||  ||||  ||||||||||| |||| |||||| | ||||||||| |||||||| |||||| |    
T  33839176 gcaagaagtccactattccatcaggtatggaaggtggttctaaacccgctttaaatgcttttcgtaacttggaagcttctttgcgtgactttgcagcagc 33839275  T
Q  407 tttctttaacatggc 421  Q
    |||||||||||||||    
T  33839276 tttctttaacatggc 33839290  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 307 - 421
Target Start/End: Original strand, 33843092 - 33843206
Alignment:
Q  307 gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgctttaaatgcctttcctaacttagcagcttctttacgtgacttggcagcaac 406  Q
    |||||||||| |||||||||||||||| || |||||||   ||||  ||||||||||| |||| || ||| | ||||||||| ||||||||||||||| |    
T  33843092 gcaagaagtccactattccatcaggtacggaaggtggtcgcaaacccgctttaaatgcttttcgtagcttggaagcttctttgcgtgacttggcagcagc 33843191  T
Q  407 tttctttaacatggc 421  Q
    |||||||||||||||    
T  33843192 tttctttaacatggc 33843206  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 550
Target Start/End: Original strand, 33839361 - 33839426
Alignment:
Q  482 gacttcaagttacacaaagaagatagcttaataacctctagtaaataaggaactaaggagagtatctaa 550  Q
    ||||||||||||||||||||||  ||||   ||||||| | ||||| ||||||||||||||| ||||||    
T  33839361 gacttcaagttacacaaagaaggaagct---taacctccaataaatcaggaactaaggagagaatctaa 33839426  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 462 - 565
Target Start/End: Original strand, 19657374 - 19657474
Alignment:
Q  462 gttccagttttatttctgtagacttcaagttacacaaagaagatagcttaataacctctagtaaataaggaactaaggagagtatctaaagaatgaggaa 561  Q
    ||||||||||||||||  ||||||| ||||| ||||||||||  ||||   ||| ||||| ||| | ||||||||||||||| ||||||  |||||||||    
T  19657374 gttccagttttatttccatagactttaagttgcacaaagaagggagct---taagctctaataattcaggaactaaggagagaatctaagaaatgaggaa 19657470  T
Q  562 tgag 565  Q
    ||||    
T  19657471 tgag 19657474  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 462 - 565
Target Start/End: Original strand, 19674218 - 19674318
Alignment:
Q  462 gttccagttttatttctgtagacttcaagttacacaaagaagatagcttaataacctctagtaaataaggaactaaggagagtatctaaagaatgaggaa 561  Q
    ||||||||||||||||  ||||||| ||||| ||||||||||  ||||   ||| ||||| ||| | ||||||||||||||| ||||||  |||||||||    
T  19674218 gttccagttttatttccatagactttaagttgcacaaagaagggagct---taagctctaataattcaggaactaaggagagaatctaagaaatgaggaa 19674314  T
Q  562 tgag 565  Q
    ||||    
T  19674315 tgag 19674318  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 19657227 - 19657276
Alignment:
Q  307 gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgct 356  Q
    |||||||| ||||||||||||| ||||||||||||||||| |||| ||||    
T  19657227 gcaagaaggcaactattccatctggtatgggaggtggtttcaaacctgct 19657276  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 19674071 - 19674120
Alignment:
Q  307 gcaagaagtcaactattccatcaggtatgggaggtggtttgaaacttgct 356  Q
    |||||||| ||||||||||||| ||||||||||||||||| |||| ||||    
T  19674071 gcaagaaggcaactattccatctggtatgggaggtggtttcaaacctgct 19674120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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