View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2837_low_11 (Length: 454)
Name: NF2837_low_11
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 49521609 - 49522041
Alignment:
| Q |
1 |
catcagggttacgcggacataaaacacaatgtacctttgtgtttttaaaatactctgcagtttcttggtcatgtgttcccatcaaaccgtctttcttaaa |
100 |
Q |
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| T |
49521609 |
catcagggttacgcggacataaaacacaatgtacctttgtgttcttaaaatactctgcagtttcttggtcatgtgttcccatcaaaccgtctttcttaaa |
49521708 |
T |
|
| Q |
101 |
agccggaacagaggttctgtcatcccaaacaagcacaagaacattaacaccttcattggcttttttcttgagcatttctcctagggtgatactactttct |
200 |
Q |
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| T |
49521709 |
agccggaacagaggttctgtcatcccaaacaagcacaagaacattaacaccttcgttggcttttttcttgagcatttctcctagggtgatactactttct |
49521808 |
T |
|
| Q |
201 |
gttgtcttgtttgggtccctaatcaaggttatttctgcatgaacagaccaaccagttatgtaaataaagactttagcattcataatggcattgtaaatat |
300 |
Q |
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| T |
49521809 |
gttgtcttgtttgggtccctaatcaaggttatttctgtatgaacagaccaaccagttatgtaaataaagactttagcattcataatggcattgtaaatat |
49521908 |
T |
|
| Q |
301 |
cttcccaacatcttccaggtacataatattttgttccagatattggaatccacggatgaacactctcagggacgtgagcgtcttggtataaagtaacact |
400 |
Q |
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| T |
49521909 |
cttcccaacatcttccaggtacataatattttgttccagatattggaatccacggatgaacactctcagggacgtgagcgtcttggtataaagtaacact |
49522008 |
T |
|
| Q |
401 |
acaaccttgtctctggtcgaaaaatgtacgctg |
433 |
Q |
| |
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| T |
49522009 |
acaaccttgtctctggtcgaaaaatgtacgctg |
49522041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 4 - 325
Target Start/End: Original strand, 49510668 - 49510989
Alignment:
| Q |
4 |
cagggttacgcggacataaaacacaatgtacctttgtgtttttaaaatactctgcagtttcttggtcatgtgttcccatcaaaccgtctttcttaaaagc |
103 |
Q |
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|||| |||||||| || ||||||||||| || ||||||||| ||||||||||||| |||||||| ||||| ||| ||||||| || ||||||||||| | |
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| T |
49510668 |
caggtttacgcgggcacaaaacacaatggacatttgtgtttctaaaatactctgctgtttcttgatcatgagttgccatcaagccatctttcttaaagtc |
49510767 |
T |
|
| Q |
104 |
cggaacagaggttctgtcatcccaaacaagcacaagaacattaacaccttcattggcttttttcttgagcatttctcctagggtgatactactttctgtt |
203 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| || | || || || ||||| | | |||| |
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| T |
49510768 |
aggaacagaagttctgtcatcccaaacaagcataagaacattaacaccttcattggctttcttcttaagaagctccccaagagtgatggttgctcttgtt |
49510867 |
T |
|
| Q |
204 |
gtcttgtttgggtccctaatcaaggttatttctgcatgaacagaccaaccagttatgtaaataaagactttagcattcataatggcattgtaaatatctt |
303 |
Q |
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| T |
49510868 |
gactcgtttggatctctaatcaaggttatttccgtgtaaacagaccaaccagttatgcaaataaaatgcttagcatcattaattgcattgcaagtatctt |
49510967 |
T |
|
| Q |
304 |
cccaacatcttccaggtacata |
325 |
Q |
| |
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|||||||| |||| || ||||| |
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| T |
49510968 |
cccaacattttcccggcacata |
49510989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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