View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2837_low_12 (Length: 435)

Name: NF2837_low_12
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2837_low_12
NF2837_low_12
[»] chr5 (1 HSPs)
chr5 (239-420)||(9169272-9169452)
[»] chr3 (4 HSPs)
chr3 (312-419)||(21219730-21219837)
chr3 (159-239)||(404383-404463)
chr3 (159-239)||(421614-421694)
chr3 (25-125)||(421480-421579)
[»] chr6 (3 HSPs)
chr6 (159-239)||(24180887-24180967)
chr6 (319-362)||(1366224-1366267)
chr6 (25-109)||(24181016-24181101)
[»] chr7 (3 HSPs)
chr7 (316-395)||(2704223-2704302)
chr7 (331-392)||(12653802-12653863)
chr7 (331-392)||(37625720-37625781)
[»] chr1 (2 HSPs)
chr1 (159-239)||(24361195-24361275)
chr1 (25-109)||(24361061-24361146)
[»] scaffold0040 (1 HSPs)
scaffold0040 (316-395)||(68325-68404)
[»] chr8 (2 HSPs)
chr8 (316-395)||(7253059-7253138)
chr8 (331-392)||(45274949-45275010)
[»] chr4 (1 HSPs)
chr4 (319-362)||(43526922-43526965)


Alignment Details
Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 239 - 420
Target Start/End: Complemental strand, 9169452 - 9169272
Alignment:
Q  239 taattgacaaatatcaatggcaaaagctacggtaggcaacctctttaggggagttaacannnnnnnnnnnnnnggtatgtaaaatagatattaaccattg 338  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||              || ||||||||||||||||||||||||    
T  9169452 taattgacaaatatcaatggcaaaggctacggtgggcaacctctttaggggagttaacattttttttttttt-ggcatgtaaaatagatattaaccattg 9169354  T
Q  339 gaagtatttgaaattttttgaagaccatattgttactgtactctctcaacactagatttccatcatccttctctcttcctct 420  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9169353 gaagtatttgaaattttttgaagaccatactgttactgtactctctcaacactaaatttccatcatccttctctcttcctct 9169272  T

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Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 312 - 419
Target Start/End: Original strand, 21219730 - 21219837
Alignment:
Q  312 ggtatgtaaaatagatattaaccattggaagtatttgaaattttttgaagaccatattgttactgtactctctcaacactagatttccatcatccttctc 411  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||    
T  21219730 ggtatgtaaaatagatattaaccattggatgtatttgaaattttttgaagaccatactattactatactctctcaacactagatttccatcatccttctc 21219829  T
Q  412 tcttcctc 419  Q
    ||||||||    
T  21219830 tcttcctc 21219837  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 404463 - 404383
Alignment:
Q  159 actgtagcgcgtgggaagtaagctttttcacacgcccgtaaattttcgtatgctaacgtccgtactaaatagcagttctgt 239  Q
    |||||||||||||| || |||| ||||  || ||||||| || |||||||||| | |||||||||||||||||||| ||||    
T  404463 actgtagcgcgtggaaaataagattttaaacgcgcccgtgaaatttcgtatgcgaccgtccgtactaaatagcagtactgt 404383  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 421614 - 421694
Alignment:
Q  159 actgtagcgcgtgggaagtaagctttttcacacgcccgtaaattttcgtatgctaacgtccgtactaaatagcagttctgt 239  Q
    |||||||||||||| ||  ||| ||||  || ||||||| || |||||||||| | |||||||||||||||||||| ||||    
T  421614 actgtagcgcgtggaaaaaaagattttaaacgcgcccgtgaaatttcgtatgcgaccgtccgtactaaatagcagtactgt 421694  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 421480 - 421579
Alignment:
Q  25 gagtaggtgtgcttttcattttgaaacggcaacagaaggaagagaaagagacggtggaaaataagctg-ggagggaagagaaactgtagcatgcgatgac 123  Q
    |||||| ||||||||||||||  |||||||  | |||||||||||||  |  | |||||||||||||| ||||| ||||||||||| ||  |||||||||    
T  421480 gagtagatgtgcttttcatttccaaacggctgcggaaggaagagaaacggtggctggaaaataagctgcggaggaaagagaaactgaag--tgcgatgac 421577  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 24180967 - 24180887
Alignment:
Q  159 actgtagcgcgtgggaagtaagctttttcacacgcccgtaaattttcgtatgctaacgtccgtactaaatagcagttctgt 239  Q
    |||||||||||||| || |||| ||||  || ||||||| || |||||||||| | |||||||||||||||||||| ||||    
T  24180967 actgtagcgcgtggaaaataagattttaaacgcgcccgtgaaatttcgtatgcgaccgtccgtactaaatagcagtactgt 24180887  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 1366267 - 1366224
Alignment:
Q  319 aaaatagatattaaccattggaagtatttgaaattttttgaaga 362  Q
    ||||||||||||||||||| || |||||||||||||||| ||||    
T  1366267 aaaatagatattaaccattagatgtatttgaaattttttaaaga 1366224  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 24181101 - 24181016
Alignment:
Q  25 gagtaggtgtgcttttcattttgaaacggcaacagaaggaagagaaagagacggtggaaaataagctg-ggagggaagagaaactg 109  Q
    |||||| ||||||||||||||  |||||||  | |||||||||||||  |  | |||||||||||||| ||||| |||||||||||    
T  24181101 gagtagatgtgcttttcatttccaaacggctgcggaaggaagagaaacggtggctggaaaataagctgcggaggaaagagaaactg 24181016  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 395
Target Start/End: Original strand, 2704223 - 2704302
Alignment:
Q  316 tgtaaaatagatattaaccattggaagtatttgaaattttttgaagaccatattgttactgtactctctcaacactagat 395  Q
    |||||||||||||||||||||||||  ||||| ||||||| ||| ||||||  | ||| | |||||||||||| ||||||    
T  2704223 tgtaaaatagatattaaccattggatatatttaaaattttctgatgaccatgatattattatactctctcaacgctagat 2704302  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 392
Target Start/End: Original strand, 12653802 - 12653863
Alignment:
Q  331 aaccattggaagtatttgaaattttttgaagaccatattgttactgtactctctcaacacta 392  Q
    |||||||||| ||| |||||||||||||||||||||  | |||   ||||||||||||||||    
T  12653802 aaccattggatgtacttgaaattttttgaagaccatggtattatcatactctctcaacacta 12653863  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 392
Target Start/End: Original strand, 37625720 - 37625781
Alignment:
Q  331 aaccattggaagtatttgaaattttttgaagaccatattgttactgtactctctcaacacta 392  Q
    |||||||||| ||| |||||||||||||||||||||  | |||   ||||||||||||||||    
T  37625720 aaccattggatgtacttgaaattttttgaagaccatggtattatcatactctctcaacacta 37625781  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 24361195 - 24361275
Alignment:
Q  159 actgtagcgcgtgggaagtaagctttttcacacgcccgtaaattttcgtatgctaacgtccgtactaaatagcagttctgt 239  Q
    |||||||||||||| || |||| ||||  || ||||||| || |||||||||| | ||||||||||| |||||||| ||||    
T  24361195 actgtagcgcgtggaaaataagattttaaacgcgcccgtgaagtttcgtatgcgaccgtccgtactatatagcagtactgt 24361275  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 24361061 - 24361146
Alignment:
Q  25 gagtaggtgtgcttttcattttgaaacggcaacagaaggaagagaaagagacggtggaaaataagctg-ggagggaagagaaactg 109  Q
    |||||| ||||||||||||||  |||||||  | |||||||||||||  |  | |||||||||||||| ||||| |||||||||||    
T  24361061 gagtagatgtgcttttcatttccaaacggctgcggaaggaagagaaacggtggctggaaaataagctgcggaggaaagagaaactg 24361146  T

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Target: scaffold0040 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 395
Target Start/End: Original strand, 68325 - 68404
Alignment:
Q  316 tgtaaaatagatattaaccattggaagtatttgaaattttttgaagaccatattgttactgtactctctcaacactagat 395  Q
    |||||||||||| ||||||||||||  ||||| |||  ||||||||| |||  | ||| | |||||||||||||||||||    
T  68325 tgtaaaatagatgttaaccattggatatatttaaaaacttttgaagatcatgatattattatactctctcaacactagat 68404  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 395
Target Start/End: Complemental strand, 7253138 - 7253059
Alignment:
Q  316 tgtaaaatagatattaaccattggaagtatttgaaattttttgaagaccatattgttactgtactctctcaacactagat 395  Q
    |||||||||||| |||| |||||||  |||||||||  |||||| ||||||  | ||| | |||||||||||||||||||    
T  7253138 tgtaaaatagatgttaatcattggatatatttgaaaacttttgatgaccatgatattattatactctctcaacactagat 7253059  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 392
Target Start/End: Complemental strand, 45275010 - 45274949
Alignment:
Q  331 aaccattggaagtatttgaaattttttgaagaccatattgttactgtactctctcaacacta 392  Q
    |||||||||| ||| |||||||||||||||||||||  | |||   ||||||||||||||||    
T  45275010 aaccattggatgtacttgaaattttttgaagaccatggtattatcatactctctcaacacta 45274949  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 43526922 - 43526965
Alignment:
Q  319 aaaatagatattaaccattggaagtatttgaaattttttgaaga 362  Q
    ||||||||||||||||||| || |||||||||||||||| ||||    
T  43526922 aaaatagatattaaccattagatgtatttgaaattttttaaaga 43526965  T

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