View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2837_low_13 (Length: 414)
Name: NF2837_low_13
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 91 - 404
Target Start/End: Complemental strand, 38981216 - 38980902
Alignment:
| Q |
91 |
gtcatggctgttattgttgtgagtggtttgctgagaatcacacggatgatgtactccatgtatattcacaagcttcaactttttcaggccactatgagtc |
190 |
Q |
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| T |
38981216 |
gtcatggctgttattgttgtgagtggtttgctgagaatcacacggatgatgtactccatgtatattcacaagcttcaactttttcaggccactatgagtc |
38981117 |
T |
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| Q |
191 |
tactaccagtacaaacacagcactgtctgctatatctttaaaagcagacaagtgatatctcacattttataacactttttcttctgtcacagcaagtaaa |
290 |
Q |
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| T |
38981116 |
tactaccagtacaaacacagcactgtctgctatatctttaaaagcagataagtgatatctcacattttataacactttttcttctgtcacagcaagtaaa |
38981017 |
T |
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| Q |
291 |
caggatccaaagacaaagcactctatatgtttcagatcatagcagctttcacattattaaaccctaattatatgatt-nnnnnnngtgcattattaaaag |
389 |
Q |
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| T |
38981016 |
caggatccaaagacaaagcactctatatgtttcagatcatagcagctttcacattattaaaccctaattatatgattaaaaaaaagtgcattattaaaag |
38980917 |
T |
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| Q |
390 |
agagtgagaattgat |
404 |
Q |
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| T |
38980916 |
agagtgagaattgat |
38980902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 38981318 - 38981260
Alignment:
| Q |
1 |
aatctagtatgattaaaggcacataatatgctgcaacatatattgaagttgtacaaaac |
59 |
Q |
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| T |
38981318 |
aatctagtatgattaaaggcacataatatgctgcaacatatattgaagttgtacaaaac |
38981260 |
T |
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