View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2837_low_14 (Length: 401)
Name: NF2837_low_14
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_low_14 |
 | |
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| [»] scaffold0838 (1 HSPs) |
| | |
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| [»] scaffold0832 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 165 - 356
Target Start/End: Original strand, 20072921 - 20073110
Alignment:
| Q |
165 |
caaactttacagcataataattttagaaactcatttatgaactctgcaaattgcaaactttagaatgaatacgaaagttaccaccaatgtgtgtatcatg |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20072921 |
caaactttacagcataataattttagaaactcatttatgaactctgcaaattgcaaactttagaatgaatacgaaagttaccaccaatgtgtgtatcatg |
20073020 |
T |
|
| Q |
265 |
tttattgtttttgtcattaagattataatttattttcatnnnnnnnnncataggtttacaataaatacggcttcgatgtccaaaggcttctt |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| | |||||||||||| |||||||||||| |||||||||||||||||| |
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|
| T |
20073021 |
tttattgtttttgtcattaagattataatttcttttcct--aaaaaaacataggtttacactaaatacggctttgatgtccaaaggcttctt |
20073110 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 36 - 157
Target Start/End: Complemental strand, 9237975 - 9237854
Alignment:
| Q |
36 |
gatggtacttgttgtattggatgtaacacttttactcaattgttactatatcaatatatcagctaacaatttttcaagtgttacaatcaccttgttacta |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||| |
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|
| T |
9237975 |
gatggtacttgttgtattggatgtaacacttttactcaattgttactatatcactatatcagctaacaatttttcaagtgttgcaatcaccttcttacta |
9237876 |
T |
|
| Q |
136 |
aaagtcattattgtagtagtga |
157 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
9237875 |
aaagttattattgtagtagtga |
9237854 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 199 - 276
Target Start/End: Original strand, 20083675 - 20083753
Alignment:
| Q |
199 |
ttatgaactctgcaaattgcaaa-ctttagaatgaatacgaaagttaccaccaatgtgtgtatcatgtttattgttttt |
276 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| |
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|
| T |
20083675 |
ttatgaactctacagattgcaaaactttagaatgaatacaaaagttgccacgaatgtgtgtatcatgtttattgttttt |
20083753 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 7e-59; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 36 - 159
Target Start/End: Original strand, 13852357 - 13852480
Alignment:
| Q |
36 |
gatggtacttgttgtattggatgtaacacttttactcaattgttactatatcaatatatcagctaacaatttttcaagtgttacaatcaccttgttacta |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
13852357 |
gatggtacttgttgtattggatgtaacacttttactcaattgttactatatcactatatcagctaacaatttttcaagtgttgcaatcaccttgttacta |
13852456 |
T |
|
| Q |
136 |
aaagtcattattgtagtagtgaca |
159 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
13852457 |
aaagtcattattgtagtagtgaca |
13852480 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 1658851 - 1658960
Alignment:
| Q |
47 |
ttgtattggatgtaacacttttactcaattgttactatatcaatatatcagctaacaatttttcaagtgttacaatcaccttgttactaaaagtcattat |
146 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
1658851 |
ttgtagtggatgtaacacttttactcaattgttactatatcactatatcagctaacaatttttcaagtgttgcaatcaccatgttactaaaagtcattat |
1658950 |
T |
|
| Q |
147 |
tgtagtagtg |
156 |
Q |
| |
|
|||||||||| |
|
|
| T |
1658951 |
tgtagtagtg |
1658960 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 36 - 146
Target Start/End: Complemental strand, 4848365 - 4848255
Alignment:
| Q |
36 |
gatggtacttgttgtattggatgtaacacttttactcaattgttactatatcaatatatcagctaacaatttttcaagtgttacaatcaccttgttacta |
135 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
4848365 |
gatggtacttgttgtattggatctaacacttttactcaattgttactatatcactatatcagctaacaatttttcaagtgttgcaatcaccttgttacta |
4848266 |
T |
|
| Q |
136 |
aaagtcattat |
146 |
Q |
| |
|
|| || ||||| |
|
|
| T |
4848265 |
aatgttattat |
4848255 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 11946695 - 11946575
Alignment:
| Q |
36 |
gatggtacttgttgtattggatgtaacacttttactcaattgttactatatcaatatatcagctaacaatttttcaagtgttacaatcaccttgttacta |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11946695 |
gatggtacttgttgtattggatgtaacacttttactcaattgttactatatcactatatcagctaacaatttttcaagtgttgcaatcaccttgttacta |
11946596 |
T |
|
| Q |
136 |
aaagtcattattgtagtagtg |
156 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
11946595 |
aaagtcattattgtagtagtg |
11946575 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 14666658 - 14666536
Alignment:
| Q |
36 |
gatggtacttgttgtattggatgtaacacttttactcaattgttactatat--caatatatcagctaacaatttttcaagtgttacaatcaccttgttac |
133 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14666658 |
gatggtacttgttgtattggatctaacacttttactcaattgttactatatatcattatatcagctaacaatttttcaagtgttgcaatcaccttgttac |
14666559 |
T |
|
| Q |
134 |
taaaagtcattattgtagtagtg |
156 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
14666558 |
taaatgtcattattgtagtagtg |
14666536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 14323140 - 14323252
Alignment:
| Q |
36 |
gatggtacttgttgtattggatgtaacacttttactcaattgttactatatcaatatatcagctaacaatttttcaagtgttacaatcaccttgttacta |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||| ||| |
|
|
| T |
14323140 |
gatggtacttgttgtattggatgtaacacttttactcaattgttactata--------tcagctaacaatttttcaagtgttgcaatcacgttgttgcta |
14323231 |
T |
|
| Q |
136 |
aaagtcattattgtagtagtg |
156 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
14323232 |
aaagtcattattgtagtagtg |
14323252 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 14416150 - 14416262
Alignment:
| Q |
36 |
gatggtacttgttgtattggatgtaacacttttactcaattgttactatatcaatatatcagctaacaatttttcaagtgttacaatcaccttgttacta |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||| ||| |
|
|
| T |
14416150 |
gatggtacttgttgtattggatgtaacacttttactcaattgttactata--------tcagctaacaatttttcaagtgttgcaatcacgttgttgcta |
14416241 |
T |
|
| Q |
136 |
aaagtcattattgtagtagtg |
156 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
14416242 |
aaagtcattattgtagtagtg |
14416262 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 17715621 - 17715509
Alignment:
| Q |
36 |
gatggtacttgttgtattggatgtaacacttttactcaattgttactatatcaatatatcagctaacaatttttcaagtgttacaatcaccttgttacta |
135 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
17715621 |
gatgatacttgttgtattggatctaacacttttactcaattgttactatatcagt--------taacaatttttcaagtgttgcaatcaccttattacta |
17715530 |
T |
|
| Q |
136 |
aaagtcattattgtagtagtg |
156 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
17715529 |
aatgtcattattgtagtagtg |
17715509 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 36 - 157
Target Start/End: Complemental strand, 28244616 - 28244495
Alignment:
| Q |
36 |
gatggtacttgttgtattggatgtaacacttttactcaattgttactatatcaatatatcagctaacaatttttcaagtgttacaatcaccttgttacta |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28244616 |
gatggtacttgttgtattggatgtaacacttttactcaattgttactatattactatatcagctaacaatttttcaagtgttgcaatcaccttgttacta |
28244517 |
T |
|
| Q |
136 |
aaagtcattattgtagtagtga |
157 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
28244516 |
aaagtcattattgtagtagtga |
28244495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 17629760 - 17629681
Alignment:
| Q |
43 |
cttgttgtattgga-tgtaacacttttactcaattgttactatatcaatatatcagctaacaatttttcaagtgttacaa |
121 |
Q |
| |
|
|||| ||||||||| | |||||||||||||||||| ||||||||||| | |||||||||||||||| ||||||||||||| |
|
|
| T |
17629760 |
cttggtgtattggaatctaacacttttactcaattcttactatatcactgtatcagctaacaatttctcaagtgttacaa |
17629681 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0838 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: scaffold0838
Description:
Target: scaffold0838; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 183 - 303
Alignment:
| Q |
36 |
gatggtacttgttgtattggatgtaacacttttactcaattgttactatatcaatatatcagctaacaatttttcaagtgttacaatcaccttgttacta |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
183 |
gatggtacttgttgtattggatgtaacacttttactcaattgttactatatcattatatcagctaacaatttttcaaatgttgcaatcaccttgttacta |
282 |
T |
|
| Q |
136 |
aaagtcattattgtagtagtg |
156 |
Q |
| |
|
||||| ||||||||| ||||| |
|
|
| T |
283 |
aaagttattattgtaatagtg |
303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0832 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: scaffold0832
Description:
Target: scaffold0832; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 214 - 334
Alignment:
| Q |
36 |
gatggtacttgttgtattggatgtaacacttttactcaattgttactatatcaatatatcagctaacaatttttcaagtgttacaatcaccttgttacta |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
214 |
gatggtacttgttgtattggatgtaacacttttactcaattgttactatatcattatatcagctaacaatttttcaaatgttgcaatcaccttgttacta |
313 |
T |
|
| Q |
136 |
aaagtcattattgtagtagtg |
156 |
Q |
| |
|
||||| ||||||||| ||||| |
|
|
| T |
314 |
aaagttattattgtaatagtg |
334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 31406175 - 31406126
Alignment:
| Q |
107 |
tttcaagtgttacaatcaccttgttactaaaagtcattattgtagtagtg |
156 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31406175 |
tttcaagtgttgcaatcaccttgttactaaatgtcattattgtagtagtg |
31406126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 24047204 - 24047251
Alignment:
| Q |
36 |
gatggtacttgttgtattggatgtaacacttttactcaattgttacta |
83 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
24047204 |
gatggtacttgctgtatcggatctaacacttttactcaattgttacta |
24047251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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