View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2837_low_15 (Length: 399)
Name: NF2837_low_15
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 51729537 - 51729154
Alignment:
| Q |
1 |
attttatccgaaaggtctgtgttgagaaactattttctgtatcatcaatcttccatgctccataaatactgctttggtccagatcaggagctgcagaacc |
100 |
Q |
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| T |
51729537 |
attttatccgaaaggtctgtgttgagaaactattttctgtatcatcaatcttccatgctccataaatactgctttggtccagatcaggagctgcagaacc |
51729438 |
T |
|
| Q |
101 |
aaaaaattctacctcagatgtaaattttgcatgagaaaagtttcactgagaaatctcagttgaagaaaattgaatatgcacaaactaaagaaaaagagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
51729437 |
aaaaaattctacctcagatgtaaattttgcatgagaaaagcttcactgagaaatctcagttgaagaaaattgaatatccacaaactaaagaaaaagagag |
51729338 |
T |
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| Q |
201 |
aaagattac--acaatagtgtcaaaagtaatcaaagaagaattccacatttccatacatagatatgaaacatactttggaagcacgnnnnnnntcctgat |
298 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51729337 |
aaagattacagacaatagtgtcaaaagtaatcaaagaagaattccacatttccatacatagatatgaaacatactttggaagcacgaaaaaaatcctgat |
51729238 |
T |
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| Q |
299 |
ttacagcataactctcatttctttttcgacaactttgggcctcaagtttcaactttcaccacccagtgagcatacctaggttca |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51729237 |
ttacagcataactctcatttctttttcgacaactttgggcctcaagtttcaactttcaccacccagtgagcatacctaggttca |
51729154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 351435 - 351381
Alignment:
| Q |
1 |
attttatccgaaaggtctgtgttgagaaactattttctgtatcatcaatcttcca |
55 |
Q |
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||||||||||||| | ||||||||||||||| || ||||||||||||||| |||| |
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| T |
351435 |
attttatccgaaaaggctgtgttgagaaactgttgtctgtatcatcaatcctcca |
351381 |
T |
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