View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2837_low_17 (Length: 379)
Name: NF2837_low_17
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 43368949 - 43369281
Alignment:
| Q |
19 |
aggtccgtatccgagaaaagcattagtgtatctttcctccggtatgtcacgctttctaagcagcttcattccaagacactcggtataaaatctgaaatca |
118 |
Q |
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| T |
43368949 |
aggtccgtatccgagaaaagcattagtatatctttcctccggtatgtcacgctttctaagcagcttcattccgagacactcagtataaaatctgaaatca |
43369048 |
T |
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| Q |
119 |
caaagagtatagtaaactaaatatgcagaaattgatgattaaattagaattccaatataataaattgaatatgaaaatactatagtatatacttaatagt |
218 |
Q |
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| T |
43369049 |
caaagagtatagtaaactaaatatgcagaaattgatgattaaattagaattccaatataataaattgaatatgaaaatactatagtatatacttaatagt |
43369148 |
T |
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| Q |
219 |
tctatccaagtcaccaacacgataaacaacatgaagcattcttcttttatcttgtttgacccattccagtacattttctggtgaagcagcagtgactgat |
318 |
Q |
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| T |
43369149 |
tctatccaagtcaccaacacgataaacaacatgaagcattcttcttttatcttgtttgacccattccagtacattttctggtgaagcagcagtgactgat |
43369248 |
T |
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| Q |
319 |
gatgacacgttcccagatgacatcactttcaga |
351 |
Q |
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| T |
43369249 |
gatgacacgttcccagatgacatcactttcaga |
43369281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 33501026 - 33501122
Alignment:
| Q |
23 |
ccgtatccgagaaaagcattagtgtatctttcctccggtatgtcacgctttctaagcagcttcattccaagacactcggtataaaatctgaaatcac |
119 |
Q |
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| T |
33501026 |
ccgtatccaagaaaggcattagtatatttctcctctgtcatgtcacgttttctgagcaccttcattccaaggcactctgtataaaatctgaaatcac |
33501122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 33501230 - 33501267
Alignment:
| Q |
226 |
aagtcaccaacacgataaacaacatgaagcattcttct |
263 |
Q |
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| T |
33501230 |
aagtcaccaacacgatatacgacatgaagcattcttct |
33501267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 256
Target Start/End: Original strand, 55265750 - 55265778
Alignment:
| Q |
228 |
gtcaccaacacgataaacaacatgaagca |
256 |
Q |
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| T |
55265750 |
gtcaccaacacgataaacaacatgaagca |
55265778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 256
Target Start/End: Original strand, 55271637 - 55271665
Alignment:
| Q |
228 |
gtcaccaacacgataaacaacatgaagca |
256 |
Q |
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| T |
55271637 |
gtcaccaacacgataaacaacatgaagca |
55271665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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