View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2837_low_21 (Length: 358)
Name: NF2837_low_21
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 343
Target Start/End: Complemental strand, 35135849 - 35135522
Alignment:
| Q |
16 |
atagtactattggcaatggcattggcaaccatagccaagttgacatcacaagcagcaaggtaagctccccttttttgcaatgtggcaactcaaattcaaa |
115 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35135849 |
atagtactattggcaatgggattggcaaccatagccaagttgacatcacaagcagcaaggtaagctccccttttttgcaatgtggcaactcaaattcaaa |
35135750 |
T |
|
| Q |
116 |
gcaaagcacaccaacattagaagatcttatactacaattagaaatggaggaagagatggcaaggaaagaaaaactcaatgaatatagtggaataagggga |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35135749 |
gcaaagtacaccaacattagaagatcttatactacaattagaaatggaggaagagatggcaaggaaagaaaaactcaatgaatatagtggaataagggga |
35135650 |
T |
|
| Q |
216 |
aggatgtcatgtgttaacaactctgacatattaagatctgcaaggaatgctttgaatcaatacccaaggttttcacttgatggaagagattccatgtata |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35135649 |
aggatgtcatgtgttaacaactctgacatattaagatctgcaaggaatgctttgaatcaatacccaaggttttcacttgatggaagagattccatgtata |
35135550 |
T |
|
| Q |
316 |
ggtcatcttttgggactatagaaggaag |
343 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
35135549 |
ggtcatcttttgggactatagaaggaag |
35135522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University