View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2837_low_22 (Length: 341)
Name: NF2837_low_22
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 87 - 323
Target Start/End: Original strand, 4682857 - 4683093
Alignment:
| Q |
87 |
aaggagaatccacagaatcataaagatagtccatatatcttataagcaagacttctagtctaaagaaatctaatggagtttaaatatcatgtgactaaaa |
186 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4682857 |
aaggaaaatccacagaatcataaagatagtccatatatcttataagcaagacttctagtctaaagaaatctaatggagtttaaatatcatgtgactaaaa |
4682956 |
T |
|
| Q |
187 |
tggcatcaagtatttacagtgtgtaaaattccagcacagtgacaaataaatttgaagtataaattagctttcactaaatgtaaataaaaagttttaagga |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4682957 |
tggcatcaagtatttacagtgtgtaaaattccagcacagtgacaaataaatttgaagtataaattagctttcactaaatgtaaataaaaagttttaagga |
4683056 |
T |
|
| Q |
287 |
taagtctcgcataggtagctcgactggtaagctaacc |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4683057 |
taagtctcgcataggtagctcgactggtaagctaacc |
4683093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 4682558 - 4682640
Alignment:
| Q |
18 |
agtaaacactttaaacaagtggaaagagatttgatcactcactcttgcatggaagaaatctggttagaaaaggagaatccaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
4682558 |
agtaaacactttaaacaagtggaaagagatttgatcactcactcttgcatggaagaaatctggttagaagaggagaattcaca |
4682640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University