View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2837_low_35 (Length: 292)

Name: NF2837_low_35
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2837_low_35
NF2837_low_35
[»] chr6 (22 HSPs)
chr6 (9-211)||(5369498-5369700)
chr6 (9-209)||(5349390-5349590)
chr6 (9-209)||(5067862-5068062)
chr6 (19-209)||(5095192-5095382)
chr6 (19-209)||(5424776-5424966)
chr6 (9-209)||(5158212-5158412)
chr6 (9-208)||(5103616-5103815)
chr6 (20-208)||(5132597-5132785)
chr6 (25-208)||(5355339-5355522)
chr6 (9-209)||(5432555-5432755)
chr6 (11-109)||(5176011-5176109)
chr6 (11-109)||(5277838-5277936)
chr6 (9-175)||(5446219-5446379)
chr6 (9-109)||(5396204-5396304)
chr6 (23-209)||(5147604-5147790)
chr6 (20-185)||(5260846-5261005)
chr6 (9-109)||(5342778-5342878)
chr6 (24-109)||(5074521-5074606)
chr6 (8-109)||(5182687-5182788)
chr6 (20-171)||(5284858-5285003)
chr6 (23-109)||(5382773-5382859)
chr6 (17-109)||(5690917-5691009)
[»] chr4 (15 HSPs)
chr4 (9-109)||(4334686-4334786)
chr4 (11-109)||(4134588-4134686)
chr4 (11-109)||(4352425-4352523)
chr4 (11-93)||(4344146-4344228)
chr4 (11-109)||(4321796-4321894)
chr4 (11-109)||(4359602-4359700)
chr4 (17-109)||(6751958-6752050)
chr4 (17-109)||(6835329-6835421)
chr4 (9-75)||(4125236-4125302)
chr4 (9-75)||(6757509-6757575)
chr4 (9-109)||(6533486-6533586)
chr4 (9-109)||(6714897-6714997)
chr4 (9-109)||(6795443-6795543)
chr4 (9-75)||(6546735-6546801)
chr4 (9-109)||(6499096-6499196)
[»] chr7 (1 HSPs)
chr7 (9-105)||(36214642-36214738)
[»] scaffold0294 (1 HSPs)
scaffold0294 (23-109)||(9450-9536)
[»] chr5 (1 HSPs)
chr5 (9-109)||(8877004-8877104)
[»] chr2 (1 HSPs)
chr2 (19-108)||(22585161-22585250)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 5369498 - 5369700
Alignment:
Q  9 agatgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggatt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5369498 agatgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggatt 5369597  T
Q  109 ttgtttagcacatataccaacaaatttgtgtagagaaaatttagtttccatcgagttagagaatagccatgtcaaactattatggaaagaggcccaggta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5369598 ttgtttagcacatataccaacaaatttgtgtagagaaaatttagtttccatcgagttagagaatagccatgtcaaactattatggaaagaggcccaggta 5369697  T
Q  209 tgg 211  Q
    |||    
T  5369698 tgg 5369700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 5349390 - 5349590
Alignment:
Q  9 agatgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggatt 108  Q
    ||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| ||||     
T  5349390 agatgaagagactcagattgcttcaacttgctggggtaaaacttgatggagattttgaatatctttcaaaaaatctgagatggctttcttggaacggatg 5349489  T
Q  109 ttgtttagcacatataccaacaaatttgtgtagagaaaatttagtttccatcgagttagagaatagccatgtcaaactattatggaaagaggcccaggta 208  Q
    ||||||| ||||||||||  |||| || | |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  5349490 ttgtttaccacatatacctgcaaacttttatagagaaaatttagtttccatcgagttagagaatagccgtgtcaaacttttatggaaagaggcccaggta 5349589  T
Q  209 t 209  Q
    |    
T  5349590 t 5349590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 5068062 - 5067862
Alignment:
Q  9 agatgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggatt 108  Q
    ||||||| | |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||     
T  5068062 agatgaagagactcagattgcttcaacttgctggggtaaaccttgatggagattttgaatatctttcgagaaatctgatatggctgtcttggaatggatg 5067963  T
Q  109 ttgtttagcacatataccaacaaatttgtgtagagaaaatttagtttccatcgagttagagaatagccatgtcaaactattatggaaagaggcccaggta 208  Q
    ||||||| ||||||||||   ||| || | ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||    
T  5067962 ttgtttaccacatatacctgaaaacttttatagagaaaatttagtttccatcgagttagagaatagcaatgtcaaacttttatggaaagtggcccaggta 5067863  T
Q  209 t 209  Q
    |    
T  5067862 t 5067862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 5095192 - 5095382
Alignment:
Q  19 actcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggattttgtttagca 118  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||    
T  5095192 actcagattgcttcaacttgctggggttaaacttgatggagattttgaatatctttcgagaaatctgagatggctgtcttggaatggattttctttaaca 5095291  T
Q  119 catataccaacaaatttgtgtagagaaaatttagtttccatcgagttagagaatagccatgtcaaactattatggaaagaggcccaggtat 209  Q
    |||||||| ||||| || |  | || ||  || |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  5095292 catatacctacaaacttttacaaaggaagcttggtttccatcgagttagagaatagcaatgtcaaacttttatggaaagaggcccaggtat 5095382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 5424776 - 5424966
Alignment:
Q  19 actcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggattttgtttagca 118  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| || |||| ||    
T  5424776 actcagattgcttcaacttgctggggtaaaacttaatggagattttaaatatctttcgagaaatctgagatggctgtcttggaatggatgttctttacca 5424875  T
Q  119 catataccaacaaatttgtgtagagaaaatttagtttccatcgagttagagaatagccatgtcaaactattatggaaagaggcccaggtat 209  Q
    |||||||| ||||| || | ||||||| ||||||||||||||||||||||||||||||||||| |||| || |||||||| | ||||||||    
T  5424876 catatacctacaaacttttatagagaacatttagtttccatcgagttagagaatagccatgtccaacttttgtggaaagacggccaggtat 5424966  T

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Target: chr6; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 5158412 - 5158212
Alignment:
Q  9 agatgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggatt 108  Q
    ||||||| | ||| |||||||| |||||||||||||| ||||||| |||||||||| ||||| |||| |||| |||||||||||||||||||||| ||||    
T  5158412 agatgaagagacttagattgcttcaacttgctggggtcaaacttgttggagattttaaatatatttcgagaagtctgagatggctgtcttggaatagatt 5158313  T
Q  109 ttgtttagcacatataccaacaaatttgtgtagagaaaatttagtttccatcgagttagagaatagccatgtcaaactattatggaaagaggcccaggta 208  Q
    || || | |||||||||| ||||| || | || |||||||||||||||||||||||||||||||||| || ||||||| ||||||||||| |||||||||    
T  5158312 ttcttcaacacatatacctacaaacttttatatagaaaatttagtttccatcgagttagagaatagcaatatcaaacttttatggaaagaagcccaggta 5158213  T
Q  209 t 209  Q
    |    
T  5158212 t 5158212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 5103815 - 5103616
Alignment:
Q  9 agatgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggatt 108  Q
    ||||||| | ||| ||| |||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||    
T  5103815 agatgaagagacttagactgcttcaactttctggagtaaaacttgatggagattttgaatatctttcgagaaatctgaaattgctgtcttggaatggatt 5103716  T
Q  109 ttgtttagcacatataccaacaaatttgtgtagagaaaatttagtttccatcgagttagagaatagccatgtcaaactattatggaaagaggcccaggta 208  Q
    || |||| |||||||||| |  || ||   |||||||||||||||||||||||||||| |||||||| ||||||  || ||||||||||||| |||||||    
T  5103715 ttctttaacacatatacctaataactttcatagagaaaatttagtttccatcgagttacagaatagcaatgtcagtcttttatggaaagaggaccaggta 5103616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 5132785 - 5132597
Alignment:
Q  20 ctcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggattttgtttagcac 119  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||   ||||| |||||||| |||||| ||| |||||||||||||  |||| |||    
T  5132785 ctcagattgcttcaacttgatggggtaaaacttgatggagattttgaaatcctttcaagaaatctaagatggttgtgttggaatggatttcctttaacac 5132686  T
Q  120 atataccaacaaatttgtgtagagaaaatttagtttccatcgagttagagaatagccatgtcaaactattatggaaagaggcccaggta 208  Q
    ||||||| ||| |||| | |||||||| ||||||||||||||||||||| |||||| |||||||||   | ||||| ||||||||||||    
T  5132685 atatacctacagatttttatagagaaagtttagtttccatcgagttagaaaatagcaatgtcaaacgtgtgtggaaggaggcccaggta 5132597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 25 - 208
Target Start/End: Complemental strand, 5355522 - 5355339
Alignment:
Q  25 attgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggattttgtttagcacatata 124  Q
    |||||| | ||||||||| ||||||||||||||| ||||||||| |||||| ||||||||||| |||||||||||||||| ||||  |||| ||||||||    
T  5355522 attgcttctacttgctggagtaaaacttgatggaaattttgaatgtctttcaagaaatctgaggtggctgtcttggaatgaatttcctttaacacatata 5355423  T
Q  125 ccaacaaatttgtgtagagaaaatttagtttccatcgagttagagaatagccatgtcaaactattatggaaagaggcccaggta 208  Q
    ||||||||  | | |  || ||||||||||||||| ||||||||||||||| ||||||||||  | ||||||||||||||||||    
T  5355422 ccaacaaacctttttctaggaaatttagtttccatagagttagagaatagcaatgtcaaacttatgtggaaagaggcccaggta 5355339  T

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Target: chr6; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 5432555 - 5432755
Alignment:
Q  9 agatgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggatt 108  Q
    ||||||| ||||||||||||||  |||||||||| ||  | ||||||||  |||||||| ||||||| ||||||||||||||||| ||||||||||||||    
T  5432555 agatgaagaaactcagattgcttgaacttgctggtgtgcagcttgatgggaattttgaacatctttcaagaaatctgagatggctttcttggaatggatt 5432654  T
Q  109 ttgtttagcacatataccaacaaatttgtgtagagaaaatttagtttccatcgagttagagaatagccatgtcaaactattatggaaagaggcccaggta 208  Q
    |   ||| ||   ||||| ||||| || | |  || |||||||||||||||||||||||| || ||  ||||||||   || ||||||||| ||||||||    
T  5432655 tccgttatcatgcatacctacaaacttttatcaagcaaatttagtttccatcgagttagaaaacagtaatgtcaaagatttgtggaaagagacccaggta 5432754  T
Q  209 t 209  Q
    |    
T  5432755 t 5432755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 5176011 - 5176109
Alignment:
Q  11 atgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggattt 109  Q
    ||||| |||||||| ||||| ||||||||||| ||  |||||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||    
T  5176011 atgaagaaactcaggttgcttcaacttgctggtgtgcaacttgatggggattttgagtatctttcaagaaatctgagatggctttcttggaatggattt 5176109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 5277838 - 5277936
Alignment:
Q  11 atgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggattt 109  Q
    ||||| |||||||| ||||| ||||||||||| ||  |||||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||    
T  5277838 atgaagaaactcagtttgcttcaacttgctggtgtgcaacttgatggggattttgagtatctttcaagaaatctgagatggctttcttggaatggattt 5277936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 5446219 - 5446379
Alignment:
Q  9 agatgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggatt 108  Q
    ||||||| | ||||||||| || |||||||||| |||||||||||||||||||||||||||| |||| ||| |||| | ||||||||| |||||||||      
T  5446219 agatgaagagactcagatttcttcaacttgctgaggtaaaacttgatggagattttgaatatgtttcgagagatctaacatggctgtcatggaatgga-- 5446316  T
Q  109 ttgtttagcacatataccaacaaatttgtgtagagaaaatttagtttccatcgagttagagaatagc 175  Q
       || |||  | || || ||||| || | | |||||||||||||||||||||||||||||||||||    
T  5446317 ---ttaagc-gacatccctacaaacttctttcgagaaaatttagtttccatcgagttagagaatagc 5446379  T

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Target: chr6; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 5396204 - 5396304
Alignment:
Q  9 agatgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggatt 108  Q
    ||||||| ||||||||| |||| |||||||||||  || |||||||||| ||||||||||||||||| |||||| |||||||||| |||||||||| |||    
T  5396204 agatgaaaaaactcagactgcttcaacttgctggtttacaacttgatggtgattttgaatatctttcaagaaatgtgagatggctttcttggaatgcatt 5396303  T
Q  109 t 109  Q
    |    
T  5396304 t 5396304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 209
Target Start/End: Complemental strand, 5147790 - 5147604
Alignment:
Q  23 agattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggattttgtttagcacata 122  Q
    |||||||| |||||| |||| ||| |||||||||| |||||||||||  |||| ||||||||||||||||| |||||||||||||||  | || ||   |    
T  5147790 agattgcttcaacttactggagtacaacttgatggggattttgaatacatttcgagaaatctgagatggctttcttggaatggatttcctctaacatgca 5147691  T
Q  123 taccaacaaatttgtgtagagaaaatttagtttccatcgagttagagaatagccatgtcaaactattatggaaagaggcccaggtat 209  Q
    |||| ||||  || | |  || ||||||||||||||| |||||||| |||||| || |||||||  | ||||||||  |||||||||    
T  5147690 tacccacaagcttttatctaggaaatttagtttccattgagttagaaaatagcaatatcaaacttctgtggaaagaaacccaggtat 5147604  T

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Target: chr6; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 5261005 - 5260846
Alignment:
Q  20 ctcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggattttgtttagcac 119  Q
    ||||||||||| ||||||||||  |||||||||||||| |||||||||||| |||| ||| || |||||  |||||| |||||||||||  ||      |    
T  5261005 ctcagattgcttcaacttgctgaagtaaaacttgatggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatggattaagt------c 5260912  T
Q  120 atataccaacaaatttgtgtagagaaaatttagtttccatcgagttagagaatagccatgtcaaac 185  Q
    | ||||| ||||| || | | ||||||||||||||||||||||||||||||| | | |||||||||    
T  5260911 acatacctacaaacttctatggagaaaatttagtttccatcgagttagagaacatcaatgtcaaac 5260846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 5342778 - 5342878
Alignment:
Q  9 agatgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggatt 108  Q
    ||||||| ||||| |||||||| |||||| |||| ||| ||||||||||||||||||| |||||||| ||||| || |||||||| | ||||||||||||    
T  5342778 agatgaataaactaagattgcttcaactttctggcgtacaacttgatggagattttgactatctttctagaaaactaagatggctatgttggaatggatt 5342877  T
Q  109 t 109  Q
    |    
T  5342878 t 5342878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 5074606 - 5074521
Alignment:
Q  24 gattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggattt 109  Q
    ||||||| ||||||||||| ||| |||||||||| ||||||||| ||||||| |||||| |||||||||| || ||||||||||||    
T  5074606 gattgcttcaacttgctggtgtacaacttgatggggattttgaacatctttcaagaaatttgagatggctttcatggaatggattt 5074521  T

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Target: chr6; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 5182788 - 5182687
Alignment:
Q  8 gagatgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggat 107  Q
    |||||||| ||||| ||| |||| ||||||||| | ||| ||||||| || || |||||||||||||| |||||||||| |||||| |||||||||||||    
T  5182788 gagatgaaaaaacttagactgcttcaacttgctagtgtacaacttgagggggactttgaatatctttcaagaaatctgatatggctttcttggaatggat 5182689  T
Q  108 tt 109  Q
    ||    
T  5182688 tt 5182687  T

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Target: chr6; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 5285003 - 5284858
Alignment:
Q  20 ctcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggattttgtttagcac 119  Q
    ||||||||||| |||||||| |  |||||||||||||| |||||||||||| |||| ||| || |||||  |||||| |||||||||||  ||      |    
T  5285003 ctcagattgcttcaacttgcagaagtaaaacttgatggggattttgaatatgtttcaagagatttgagactgctgtcgtggaatggattaagt------c 5284910  T
Q  120 atataccaacaaatttgtgtagagaaaatttagtttccatcgagttagagaa 171  Q
    ||||||| ||||| || | | ||||||||||| ||||||| |||||||||||    
T  5284909 atatacctacaaacttctatggagaaaatttaatttccattgagttagagaa 5284858  T

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Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 5382773 - 5382859
Alignment:
Q  23 agattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggattt 109  Q
    |||||||| ||||||||||| ||| ||||||||||||||||  | ||||||||  |||| || ||||| |||| |||||| ||||||    
T  5382773 agattgcttcaacttgctggagtacaacttgatggagatttcaagtatctttcaggaaaactaagatgactgtgttggaaaggattt 5382859  T

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Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 5691009 - 5690917
Alignment:
Q  17 aaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggattt 109  Q
    ||||| |||||| | ||||||||||| ||| ||||||||||  |||||||  | ||||| | ||||||||||||| | |||||| ||||||||    
T  5691009 aaactgagattgtttcaacttgctggagtagaacttgatgggaattttgataaactttcaaaaaatctgagatggttttcttgggatggattt 5690917  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 4334686 - 4334786
Alignment:
Q  9 agatgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggatt 108  Q
    ||||||| |||||||||||||| |||||| |||| | | ||||||||||||||||| ||||||||||||||||  |||||||||||   |||||||||||    
T  4334686 agatgaagaaactcagattgcttcaactttctggcgcacaacttgatggagattttaaatatctttccagaaagttgagatggctgcactggaatggatt 4334785  T
Q  109 t 109  Q
    |    
T  4334786 t 4334786  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 4134686 - 4134588
Alignment:
Q  11 atgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggattt 109  Q
    ||||| ||||| |||||||| |||| | |||| ||| ||||||||||||||||| |||||||||| |||||| |||||||||||| |||||||| ||||    
T  4134686 atgaagaaactgagattgcttcaaccttctggtgtacaacttgatggagattttaaatatctttcaagaaatttgagatggctgtgttggaatgaattt 4134588  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 4352425 - 4352523
Alignment:
Q  11 atgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggattt 109  Q
    ||||| |||||||||||||| |||||| |||| ||| ||||||||||||||||| |||||||||| |||||| ||| |||||||   ||||||||||||    
T  4352425 atgaagaaactcagattgctgcaactttctggtgtacaacttgatggagattttaaatatctttcaagaaatttgaaatggctgcactggaatggattt 4352523  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 4344146 - 4344228
Alignment:
Q  11 atgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggct 93  Q
    ||||| ||||| |||||||| |||||| |||| ||| ||||||||||||||||| |||||||||| |||||| ||||||||||    
T  4344146 atgaagaaacttagattgctgcaactttctggtgtacaacttgatggagattttaaatatctttcaagaaatttgagatggct 4344228  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 4321894 - 4321796
Alignment:
Q  11 atgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggattt 109  Q
    ||||| |||||||||||||| |||||| |||| ||| ||||||||||||||||| ||||| |||| |||||| | | |||||||   ||||||||||||    
T  4321894 atgaagaaactcagattgctgcaactttctggtgtacaacttgatggagattttaaatatatttcaagaaatttaaaatggctgcactggaatggattt 4321796  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 4359602 - 4359700
Alignment:
Q  11 atgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggattt 109  Q
    ||||| |||||||||||||| |||||| | || ||| ||||||||||||||||| || ||||||| |||||  |||||||||||   ||||||||||||    
T  4359602 atgaagaaactcagattgctgcaactttccggtgtacaacttgatggagattttaaacatctttcaagaaaattgagatggctgcagtggaatggattt 4359700  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 6751958 - 6752050
Alignment:
Q  17 aaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggattt 109  Q
    |||||||||||||| ||||||||| |||| ||| || | ||||||||| || ||||||| |||||||| |||||| ||| |||| ||||||||    
T  6751958 aaactcagattgcttcaacttgcttgggtgaaatttaaaggagattttaaacatctttcgagaaatcttagatggttgtattggcatggattt 6752050  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 6835329 - 6835421
Alignment:
Q  17 aaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggattt 109  Q
    |||||||||||||| |||||||||||||| |||||| | ||||||||| || | ||||| |||||||| |||||| |||  ||| ||||||||    
T  6835329 aaactcagattgcttcaacttgctggggtgaaacttaaaggagattttaaacacctttcgagaaatcttagatggttgtactggcatggattt 6835421  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 4125302 - 4125236
Alignment:
Q  9 agatgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttc 75  Q
    ||||||| |||||||||||||| |||||| |||| | | ||||||||||||||||| ||||||||||    
T  4125302 agatgaagaaactcagattgcttcaactttctggtgcacaacttgatggagattttaaatatctttc 4125236  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 6757509 - 6757575
Alignment:
Q  9 agatgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttc 75  Q
    ||||||| |||||||||||||| ||||||| ||||||| | ||| ||||||||||| ||||||||||    
T  6757509 agatgaataaactcagattgctacaacttgttggggtacagcttaatggagattttaaatatctttc 6757575  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 6533586 - 6533486
Alignment:
Q  9 agatgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggatt 108  Q
    ||||||| || ||||||||||| ||||||||||| ||  ||||  ||||||||||| ||| |||||| ||| |||| ||||||||||  ||| |||||||    
T  6533586 agatgaataagctcagattgcttcaacttgctggtgtgcaactgaatggagattttaaatgtctttcaagagatcttagatggctgtactggcatggatt 6533487  T
Q  109 t 109  Q
    |    
T  6533486 t 6533486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 6714897 - 6714997
Alignment:
Q  9 agatgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggatt 108  Q
    ||||||| |||||||||||||| |  ||||||||||| || ||| | ||||||||| ||||||||||  || ||||||  |||||||  ||| |||||||    
T  6714897 agatgaataaactcagattgcttcgccttgctggggtgaagcttaaaggagattttaaatatctttcaggagatctgaagtggctgtactggcatggatt 6714996  T
Q  109 t 109  Q
    |    
T  6714997 t 6714997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 6795443 - 6795543
Alignment:
Q  9 agatgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggatt 108  Q
    |||||||||||||||||||||| |  || |||||||| || ||| | ||||||||| |||| ||||| ||| |||| |  ||||||| |||| |||||||    
T  6795443 agatgaacaaactcagattgcttcgcctcgctggggtgaagcttaagggagattttaaatacctttcaagagatcttaagtggctgtattggcatggatt 6795542  T
Q  109 t 109  Q
    |    
T  6795543 t 6795543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 6546801 - 6546735
Alignment:
Q  9 agatgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttc 75  Q
    ||||||| |||||||||||||| | ||||| |||||| || ||| ||||||||||| |||| |||||    
T  6546801 agatgaataaactcagattgcttcgacttggtggggtgaagcttaatggagattttaaatacctttc 6546735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 6499196 - 6499096
Alignment:
Q  9 agatgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggatt 108  Q
    ||||||| |||||||||||||| |||||| | |||||  | ||| ||||||||||| |||| |||||| || | || || |||||||| ||| || ||||    
T  6499196 agatgaataaactcagattgcttcaactttccggggttcagcttaatggagattttaaatacctttccggagaacttaggtggctgtcctggcatagatt 6499097  T
Q  109 t 109  Q
    |    
T  6499096 t 6499096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 36214738 - 36214642
Alignment:
Q  9 agatgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatgg 105  Q
    ||||||| | |||||||||||| ||||||||||| ||| |||||||||| || ||||| |||||||| | |||| |||||||||| |||||||||||    
T  36214738 agatgaaaagactcagattgcttcaacttgctggtgtacaacttgatggggactttgagtatctttcaaaaaatttgagatggctttcttggaatgg 36214642  T

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Target: scaffold0294 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 9536 - 9450
Alignment:
Q  23 agattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggattt 109  Q
    |||||||| ||||||||||| ||| |||||||||||||||| || |||||||| ||||| || |||||||||| |||||| ||||||    
T  9536 agattgcttcaacttgctggagtacaacttgatggagatttcgagtatctttcaagaaaactaagatggctgtgttggaaaggattt 9450  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 8877004 - 8877104
Alignment:
Q  9 agatgaacaaactcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggatt 108  Q
    ||||||| | |||||||||||| |||||||| || ||| ||||||||||| | ||||||| |||||||| ||||||||||| | | |||||||||| |||    
T  8877004 agatgaagagactcagattgcttcaacttgccggcgtacaacttgatggaaactttgaatttctttccaaaaatctgagattgttatcttggaatgcatt 8877103  T
Q  109 t 109  Q
    |    
T  8877104 t 8877104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 22585250 - 22585161
Alignment:
Q  19 actcagattgctccaacttgctggggtaaaacttgatggagattttgaatatctttccagaaatctgagatggctgtcttggaatggatt 108  Q
    |||||||||||| ||||||||||  |||||||||||||| || |||  |||| |||| ||| |  |||||| |||||| |||||||||||    
T  22585250 actcagattgcttcaacttgctgaagtaaaacttgatggggactttagatatgtttcaagagagttgagattgctgtcatggaatggatt 22585161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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