View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2837_low_36 (Length: 282)
Name: NF2837_low_36
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 57 - 265
Target Start/End: Complemental strand, 8037418 - 8037216
Alignment:
| Q |
57 |
aataattggttcacgatatgccaatacatacgagttttcaatagggcacataaagacacaatctaattaattagacaagagtcgtggggttgtgagaatg |
156 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8037418 |
aataattggttcacgatatgc------atacgagttttcaatagagcacataaagacacaatctaattaattagacaagagtcgtggggttgtgagaatg |
8037325 |
T |
|
| Q |
157 |
agtcgatcatattgtgacaaaaattaagagaaaactatatgcgctagctgctgaattaatattcttcaatgccagccatttgatcaatactttagcacca |
256 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8037324 |
agtcgatcatattgtgacaaaaattacgagaaaactatatgcgctagctgctgaattaatattcttcaatgccagccatttgatcaatactttagcacca |
8037225 |
T |
|
| Q |
257 |
tgcaaatac |
265 |
Q |
| |
|
||||||||| |
|
|
| T |
8037224 |
tgcaaatac |
8037216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 8044356 - 8044254
Alignment:
| Q |
126 |
attagacaagagtcgtggggttgtgagaatgagtcgatcatattgtgacaaaaattaagagaaaactatatgc--gctagctgctgaattaatattcttc |
223 |
Q |
| |
|
|||||||||||||||||||||| ||||| || | | |||||||| |||||||||| |||||||||| | || ||||||||||||||||||||||||| |
|
|
| T |
8044356 |
attagacaagagtcgtggggttatgagagtgtgacaatcatattatgacaaaaatagagagaaaactgtgcgctagctagctgctgaattaatattcttc |
8044257 |
T |
|
| Q |
224 |
aat |
226 |
Q |
| |
|
||| |
|
|
| T |
8044256 |
aat |
8044254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University