View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2837_low_38 (Length: 269)
Name: NF2837_low_38
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 18803412 - 18803660
Alignment:
| Q |
16 |
caaaggtttgcgacgaagaaacatttagcaacaaaattccatcattttctaaacatagcaaaatctcagatagtggaatcttgtggacagtgtaacatga |
115 |
Q |
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| T |
18803412 |
caaaggtttgcgacgaagaaacatttagcaacaaaattccatcattttctaaacatagcaaaatctcagaaagtggaatcttgtggacagtgtaacatga |
18803511 |
T |
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| Q |
116 |
aatctgaatagcaacttcactatcatttagccaacttgttgaaactacaaaaccagagttgtaactatgtttcttcttttgagattctttgcttataata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
18803512 |
aatctgaatagcaacttcactatcatttagccaacttgttgaaactacaaaaccagagttgtaactatgtttcttcttttgagattctttcgttatatta |
18803611 |
T |
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| Q |
216 |
acttcatttacttgtggagaaagtctcaataagatctcttcttctctct |
264 |
Q |
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| T |
18803612 |
acttcatttacttgtggagaaagtctcaataagatctcttcttttctct |
18803660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 18782478 - 18782715
Alignment:
| Q |
16 |
caaaggtttgcgacgaagaaacatttagcaacaaaattccatcattttctaaacatagcaaaatctcagatagtggaatcttgtggacagtgtaacatga |
115 |
Q |
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| T |
18782478 |
caaaggtctgagatgaagaaagattaagcagcaaaaggccatcattttccaaacacatcaagatctcagaaagtggaatcttgtggacagtgtaacatga |
18782577 |
T |
|
| Q |
116 |
aatctgaatagcaacttcactatcatttagccaacttgttgaaactacaaaaccagagttgtaactatgtttcttcttttgagattctttgcttataata |
215 |
Q |
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| T |
18782578 |
aatctgaatggtaatttcactatcattgagccaacttgttgaaactacaaaaccagagttgtaactatgcttcttcctttgagattctttgcttagaata |
18782677 |
T |
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| Q |
216 |
acttcatttacttgtggagaaagtctcaataagatctc |
253 |
Q |
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| || | ||||||||||||||||| |||||||||||| |
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| T |
18782678 |
aactcttctacttgtggagaaagtcccaataagatctc |
18782715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 18791968 - 18792191
Alignment:
| Q |
30 |
gaagaaacatttagcaacaaaattccatcattttctaaacatagcaaaatctcagatagtggaatcttgtggacagtgtaacatgaaatctgaatagcaa |
129 |
Q |
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||||||||||| |||| ||||| ||||||||||| ||||| | ||| |||||||| ||||||||||| |||||||||||||||||||||||||| | || |
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| T |
18791968 |
gaagaaacattaagcagcaaaaggccatcattttccaaacaaatcaagatctcagaaagtggaatcttttggacagtgtaacatgaaatctgaatggtaa |
18792067 |
T |
|
| Q |
130 |
cttcactatcatttagccaacttgttgaaactacaaaaccagagttgtaactatgtttcttcttttgagattctttgcttataataacttcatttacttg |
229 |
Q |
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| T |
18792068 |
tttcactatcattgagcctactaattgaaactacaaaaccagagttgtaactatgcttcttcctttgagattctttgcttagaataaactcttctacttg |
18792167 |
T |
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| Q |
230 |
tggagaaagtctcaataagatctc |
253 |
Q |
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|||||||||||||||||||||||| |
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| T |
18792168 |
tggagaaagtctcaataagatctc |
18792191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 35564390 - 35564265
Alignment:
| Q |
54 |
ccatcattttctaaacatagcaaaatctcagatagtggaatcttgtggacagtgtaacatgaaatctgaatagcaacttcactatcatttagccaacttg |
153 |
Q |
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|||| |||||||||||| | ||| ||||||||||| |||||||||| | | ||| | ||||| |||||| ||| ||| ||||||| |||| ||||| |
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| T |
35564390 |
ccattattttctaaacacatcaagatctcagatagaggaatcttgttggcctcataagacgaaatatgaataacaagctcagtatcattaagcctacttg |
35564291 |
T |
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| Q |
154 |
ttgaaactacaaaaccagagttgtaa |
179 |
Q |
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|||||||||||||| |||| |||||| |
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| T |
35564290 |
ttgaaactacaaaagcagaattgtaa |
35564265 |
T |
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