View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2837_low_4 (Length: 636)
Name: NF2837_low_4
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 352 - 629
Target Start/End: Complemental strand, 25695827 - 25695549
Alignment:
| Q |
352 |
caatgacacaaggtaagagataagtaggggtacgaggagtgtgtttagaagaatgtgccattgtagaagaagaaaaatcagaaacaatgaagaaagtgtc |
451 |
Q |
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| T |
25695827 |
caatgacacaaggtaagagataagtaggggtacgaggagtgtgtttagaagaatgtgccattgtagaagaagaaaaatcagaaacaatgaagaaagtgtc |
25695728 |
T |
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| Q |
452 |
ttttgagtttggtaacacattttgttatgttactaaatgttgttgtaaaagattgagaagaagtggtggtagagtcatgatttagaaacataaggacact |
551 |
Q |
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| T |
25695727 |
ttttgagtttggtaacacattttgttatgttactaaatgttgttgtaaaagattgagaagaagtggtggtagagtcatgatttagaaacataaggacact |
25695628 |
T |
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| Q |
552 |
catttcacatgatggtggagaccacgtgtgtgaaaaatgctgtg-aaagttgagattgaggttattattatgatgatgt |
629 |
Q |
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| T |
25695627 |
catttcacatgatggtggagaccacgtgtgtgaaaaatgctgtgaaaagttgagattgaggttattatgatgatgatgt |
25695549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 25696177 - 25695892
Alignment:
| Q |
1 |
tctgctagctacatcatccacctgtttgatgaaattacacaaagaagnnnnnnnntagttagacagcaagaacaatgatagaatttgaaagctcctagca |
100 |
Q |
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| T |
25696177 |
tctgctagctacatcatccacctgtttgatgaaattacacaaagaagaaaaaaaatagttagacagcaaaaacaatgatagaatttgaaagctcctagca |
25696078 |
T |
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| Q |
101 |
ccaactggtatctgacacgacactgatacatgtaattacgttgaannnnnnnnccttcaaattattcctatatagatatgtcaatgttagtgtcgtgtca |
200 |
Q |
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| T |
25696077 |
ccaactggtatctgacacgacactgatacatgtaattatgttgaattttttttccttcaaattattcctatatacatatgtcaatgt-agtgtcgtgtca |
25695979 |
T |
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| Q |
201 |
aatgaccatacatgtttgtgtctgtgtcggtgtttcatagtttgacgattgaagggaaattgagaagtgggttggtgatggggtgtg |
287 |
Q |
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| T |
25695978 |
aatgaccatacatgtttgtgtctgtgtcagtgtttcatagtttgacgattgaagggaaattgagaagtgggttggtgatggggtgtg |
25695892 |
T |
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