View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2837_low_44 (Length: 251)
Name: NF2837_low_44
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_low_44 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 15171697 - 15171939
Alignment:
| Q |
9 |
gagatgaacgtagaggataacaccacaagaccaggcatcagctttagatccgtcgtatccaatccggccgagaatctccggcgcggtgtacgccggcgtt |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15171697 |
gagaagaacgtagaggataacaccacaagaccaggcatcagctttagatccgtcgtatccaatccggccgagaatctccggcgcggtgtacgccggcgta |
15171796 |
T |
|
| Q |
109 |
ccacaagctgtatgcagaagaccgtttttgagctgttccggcaacgccgagagaccgaaatcggaaaccttgagattaccttcagcgtcgaggaggagat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15171797 |
ccacaagctgtatgcagaagaccgtttttgagctgctccggcaacgccgagagaccgaaatcggaaaccttgagattaccttcagcatcgaggaggagat |
15171896 |
T |
|
| Q |
209 |
tctgcggtttgagatcgcggtgagcgataccgttacggtggca |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15171897 |
tctgcggtttgagatcgcggtgagcgataccgttacggtggca |
15171939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 78 - 251
Target Start/End: Original strand, 34017216 - 34017389
Alignment:
| Q |
78 |
gagaatctccggcgcggtgtacgccggcgttccacaagctgtatgcagaagaccgtttttgagctgttccggcaacgccgagagaccgaaatcggaaacc |
177 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||| || || || || |||| |||||| ||||| || | || ||||||||||||||||||||| |
|
|
| T |
34017216 |
gagaatctccggcgcagtgtacgccggcgtaccacaagcagtgtggagtagtccgtctttgagatgttcaggaagagcagagagaccgaaatcggaaacc |
34017315 |
T |
|
| Q |
178 |
ttgagattaccttcagcgtcgaggaggagattctgcggtttgagatcgcggtgagcgataccgttacggtggca |
251 |
Q |
| |
|
|||||||| || || ||||||||||||||||| |||||||| ||||| |||||||||| |||||||||||||| |
|
|
| T |
34017316 |
ttgagattcccatcggcgtcgaggaggagattttgcggtttaagatcacggtgagcgacgccgttacggtggca |
34017389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 54659626 - 54659554
Alignment:
| Q |
158 |
agagaccgaaatcggaaaccttgagattaccttcagcgtcgaggaggagattctgcggtttgagatcgcggtg |
230 |
Q |
| |
|
||||||| ||||| || || ||||||||||| || |||||||||||||||||| ||| |||||||| ||||| |
|
|
| T |
54659626 |
agagaccaaaatcagagactttgagattaccgtcttcgtcgaggaggagattctccggcttgagatcacggtg |
54659554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University