View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2837_low_47 (Length: 250)
Name: NF2837_low_47
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_low_47 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 42 - 250
Target Start/End: Original strand, 4682119 - 4682327
Alignment:
| Q |
42 |
aatcatctaatttgaaaa-gtaaagatagttcaacatagatataccaaaatcccattttaataattacatttccatgaactatttttattctaataaaga |
140 |
Q |
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| T |
4682119 |
aatcatctaatttgaaaaagtaaagatagttcaacatagatatatcaaaatcc-attttaataattacatttccatgaactatttttattctaataaaga |
4682217 |
T |
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| Q |
141 |
acataaattgatgagaatcatttttatgttaatatatttaaacatacaccaatttcgttaaacttgtttataacgaaaatcaattctgttaaaattaatt |
240 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||| |
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| T |
4682218 |
acataaattgatgagaatcatttttatgttaatctatccaaacatacaccaatttcgttaaacttgtttttaaggaaaattaattctgttaaaattaatt |
4682317 |
T |
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| Q |
241 |
ttcacctctt |
250 |
Q |
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| T |
4682318 |
ttcacctctt |
4682327 |
T |
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