View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2837_low_49 (Length: 248)
Name: NF2837_low_49
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_low_49 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 457663 - 457423
Alignment:
| Q |
18 |
aattccctgcaaaatgtatttatttattacaacaaattaggccacttaaaatgtattcatttatttat----atttaagtattatcatgaaaaataa--- |
110 |
Q |
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| T |
457663 |
aattccctgcaaaatgtatttatttattacaacaaattaggccacttaaaatgtattcatttatttatttatatataagtattatcatgaaaaataatta |
457564 |
T |
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| Q |
111 |
-ccacata--ctgcatataaagtgcacccaaattgaagtagagaattaattttccatgcattcaggtctggcttcaagaataatgtcagtattgatgatt |
207 |
Q |
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| T |
457563 |
accacatatactgcatataaagtgcacccaaattgaagtagagaattaattttccatgcattcaggtctggctccaagaataacgtcagtattgatgatt |
457464 |
T |
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| Q |
208 |
gtaatgttgaaattaaacacatccaagctgacaatgatata |
248 |
Q |
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| T |
457463 |
gtaatgttgaaattaaacacatccaagctgacaatgatata |
457423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 111 - 246
Target Start/End: Complemental strand, 449289 - 449154
Alignment:
| Q |
111 |
ccacatactgcatataaagtgcacccaaattgaagtagagaattaattttccatgcattcaggtctggcttcaagaataatgtcagtattgatgattgta |
210 |
Q |
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| T |
449289 |
ccacatactgcatataaagtgcaaccgagttgaactagagatttaatcttccatgcattcaagtttggctcaaagaatagtgccactattgatgattgta |
449190 |
T |
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| Q |
211 |
atgttgaaattaaacacatccaagctgacaatgata |
246 |
Q |
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| T |
449189 |
atgttgacattatacacatccaggctgacaatgata |
449154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 475328 - 475102
Alignment:
| Q |
18 |
aattccctgcaaaatgtatttatttattacaacaaattaggccacttaaaatgtattcatttatt-tatatttaagtatt--------atcatgaaaaat |
108 |
Q |
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| T |
475328 |
aattccctgcaaaatgtatttatttattacaa---attaggccactcaatgtgtattaattaataatatatacaagtattgttgtatcatcatggaaaat |
475232 |
T |
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| Q |
109 |
aaccacatactgcatataaagtgcacccaaattgaagtagagaattaattttccatgcattcaggtctggcttcaagaataatgtcagtattgatgattg |
208 |
Q |
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| T |
475231 |
atgggcatactgcatataaagcgcaaccaaattgaagtagagaattaattttccatgcattaaggtctggctctaagaatagtgtgactaatgctgattg |
475132 |
T |
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| Q |
209 |
taatgttgaaattaaacacatccaagctga |
238 |
Q |
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| T |
475131 |
taatgttgccatgaaacacatccatgctga |
475102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 237
Target Start/End: Complemental strand, 480692 - 480566
Alignment:
| Q |
111 |
ccacatactgcatataaagtgcacccaaattgaagtagagaattaattttccatgcattcaggtctggcttcaagaataatgtcagtattgatgattgta |
210 |
Q |
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| T |
480692 |
ccacatactgcatataaaatgcaaccaaattgaagcaaagaattgatcttccaaacatttaggtctgattccacgaataatgtgactactgttgattgaa |
480593 |
T |
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| Q |
211 |
atgttgaaattaaacacatccaagctg |
237 |
Q |
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| T |
480592 |
atgtagacattaaacacatccatgctg |
480566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 232
Target Start/End: Complemental strand, 468685 - 468564
Alignment:
| Q |
111 |
ccacatactgcatataaagtgcacccaaattgaagtagagaattaattttccatgcattcaggtctggcttcaagaataatgtcagtattgatgattgta |
210 |
Q |
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| T |
468685 |
ccacatacagcatataaagcgctaccaaattgaagcagagacttaatcttccatccattaaagtctggctctaagaatagtgtgactaatgctgattgta |
468586 |
T |
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| Q |
211 |
atgttgaaattaaacacatcca |
232 |
Q |
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| T |
468585 |
atgttgccatgaaacacatcca |
468564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 238
Target Start/End: Original strand, 27490042 - 27490169
Alignment:
| Q |
111 |
ccacatactgcatataaagtgcacccaaattgaagtagagaattaattttccatgcattcaggtctggcttcaagaataatgtcagtattgatgattgta |
210 |
Q |
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| T |
27490042 |
ccacatactgaatataaaatgcaaccaaattgaagtagagaagtaatcttccacgcatttagatctgcctccatgaatagtgtcactagtgatgattgta |
27490141 |
T |
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| Q |
211 |
atgttgaaattaaacacatccaagctga |
238 |
Q |
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| T |
27490142 |
atgttgccattaaacacatccaggctga |
27490169 |
T |
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