View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2837_low_50 (Length: 248)
Name: NF2837_low_50
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 1496228 - 1496468
Alignment:
| Q |
1 |
ctcttattgcgccaaggatgtaatgtttactagtattctaaaaatgcttcactgatgtttgaactattaaatgtaagatgtttctgttttcaaatttact |
100 |
Q |
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| T |
1496228 |
ctcttattgcgccaaggatgtaatgtttactagtaatctaaaaatgcttcactgatgtttgaactcttaaatgtaagatgtttctgttttcaaatttact |
1496327 |
T |
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| Q |
101 |
taaagatactactttgtttttgtttacaaggagatggaactcttattgtgacaaggatgtatttcactactttgtttcatacttactttactgcatccct |
200 |
Q |
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| T |
1496328 |
taaagatactactttgtttttgtttacaaggagatggaactcttattgtgacaaggatgtatttcactactttgtttcatacttactttactgcatccct |
1496427 |
T |
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| Q |
201 |
cattagtagcatgggttttgcaactttgtgagtgatgatgt |
241 |
Q |
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| T |
1496428 |
cattagtagcatgggttttgcaactttgtgagtgatgatgt |
1496468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 1517811 - 1518054
Alignment:
| Q |
4 |
ttattgcgccaaggatgtaatgtttactagtattctaaaaatgcttcactgatgtttgaactattaaatgtaagatgtttctgttttcaaatttacttaa |
103 |
Q |
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| T |
1517811 |
ttattgcgccaaggatgtaatgtttactagtattctaaaaatgcttcactgatgtttgaactattaaatttaagatgtttttgttttcgaatttatttct |
1517910 |
T |
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| Q |
104 |
a---gatactactttgtttttgtttacaaggagatggaactcttattgtgacaaggatgtatttcactactttgt-----ttcatacttactttactgca |
195 |
Q |
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| T |
1517911 |
atgagatactactttgtttttgtttaaaaggagatggaactctcattgcaacaaggatgtatttcaatactttgtcttgtttcaaacttactttactgca |
1518010 |
T |
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| Q |
196 |
tccctcattagtagcatgggttttgcaactttgtgagtgatgat |
239 |
Q |
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| T |
1518011 |
tccctcattagtagaatcggttttgcaactttgtgagtgatgat |
1518054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 1508324 - 1508409
Alignment:
| Q |
13 |
caaggatgtaatgtttactagtattctaaaaatgcttcactgatgtttgaactattaaatgtaagatgtttctgttttcaaattta |
98 |
Q |
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| T |
1508324 |
caaggatgcattgtttgctagtattctaaaagtgctttcttgtagtttgaacttttgaatgtaagatgtttttgttttgaaattta |
1508409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 1489682 - 1489770
Alignment:
| Q |
13 |
caaggatgtaatgtttactagtattctaaaaatgcttcactgatgtttgaactattaaatgtaagatgtttctgttttcaaatttactt |
101 |
Q |
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| T |
1489682 |
caaggatgcattgtttgctagtattctaaaagtgatttcttgtagtttgaactttttaatgtaagatgtttttgtttttaaatttactt |
1489770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 1513725 - 1513813
Alignment:
| Q |
13 |
caaggatgtaatgtttactagtattctaaaaatgcttcactgatgtttgaactattaaatgtaagatgtttctgttttcaaatttactt |
101 |
Q |
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| T |
1513725 |
caaggatgcattgtttgctagtattctaaaagtgatttcttgtagtttgaactttttaatgtaagatgtttttgtttttaaatttactt |
1513813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 1530104 - 1530192
Alignment:
| Q |
13 |
caaggatgtaatgtttactagtattctaaaaatgcttcactgatgtttgaactattaaatgtaagatgtttctgttttcaaatttactt |
101 |
Q |
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| T |
1530104 |
caaggatgcattgtttcctagtattctaaaagtgatttcttgtagtttgaactcttgcatgtaagatgtttttgttttcaaatttactt |
1530192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 1534300 - 1534331
Alignment:
| Q |
1 |
ctcttattgcgccaaggatgtaatgtttacta |
32 |
Q |
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| T |
1534300 |
ctcttattgcgccaaggatgtaatgtttacta |
1534331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 370689 - 370617
Alignment:
| Q |
29 |
actagtattctaaaaatgcttcactgatgtttgaactattaaatgtaagatgtttctgttttcaaatttactt |
101 |
Q |
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| T |
370689 |
actagtattctggaaaagctttcctgatgtttgaattctaaaatgtaagaagtttttgtttacaaatttactt |
370617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 44575834 - 44575893
Alignment:
| Q |
24 |
tgtttactagtattctaaaaatgcttcactgatgtttgaactattaaatgtaagatgttt |
83 |
Q |
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| T |
44575834 |
tgtttgctagtattcgaaaattgcttcattgtagtttgaactcttaaatgtaagatgttt |
44575893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 515077 - 515149
Alignment:
| Q |
29 |
actagtattctaaaaatgcttcactgatgtttgaactattaaatgtaagatgtttctgttttcaaatttactt |
101 |
Q |
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| T |
515077 |
actagtattctggaaaagctttcctgatgtttgaattctaaaatgtaagaagtttttgtttacaaatttactt |
515149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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