View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2837_low_52 (Length: 244)
Name: NF2837_low_52
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 9169146 - 9168915
Alignment:
| Q |
1 |
tgcaatagttttaaaattagtgaacctggtaaagttgtgcttaccattgacaacaccaagttctataaagaaaaaccccttgtaccgcttaaaaaccaag |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9169146 |
tgcaacagttttaaaattagtgaacctggtaaagttgtgcttatcattgacaacaccaagttctataaagaaaaacctcttgtaccgcttaaaaaccaag |
9169047 |
T |
|
| Q |
101 |
tcttcactcttgactgagaaaaatcatcatgtttatgtacagcgtgcaagaccaaaattgttttgtttgattatgttctcgtgtccacttttaccactaa |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9169046 |
tcttcactct-gactgagaaaaatcatcatgtttatgtacagcgtgcaagaccaaaattgttttgtttgattatgttctcgtgtccacttttaccactaa |
9168948 |
T |
|
| Q |
201 |
atgatcttctaattgaactttcctgctattcat |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
9168947 |
atgatcttctaattgaactttcctgctattcat |
9168915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 21219967 - 21220200
Alignment:
| Q |
1 |
tgcaatagttttaaaattagtgaacctggtaaagttgtgcttaccattgacaacaccaagttctataaagaaaaaccccttgtaccgcttaaaaaccaag |
100 |
Q |
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||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
21219967 |
tgcaacagttttaaaactaatgaacctggtaaagttgtgcttaccattgacaacaccaagttctataaagaaaaacctcttgtaccgtttaaaaaccaag |
21220066 |
T |
|
| Q |
101 |
tcttcactct-tgactgagaaaaatcatcatgtttatgtacagcgtgcaagaccaaaattgttttgtttgattatgttctcgtgtccacttttaccacta |
199 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
21220067 |
tcttcactctctgattgagaaaaatcatcatgtttatgtacaacgtgtaagaccaaagttgttttgtttgattatgttctcgtgtccacttttaccacca |
21220166 |
T |
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| Q |
200 |
aatgatcttctaattgaactttcctgctattcat |
233 |
Q |
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||| ||||||||||| |||||||||||||||||| |
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| T |
21220167 |
aataatcttctaatttaactttcctgctattcat |
21220200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39895402 - 39895636
Alignment:
| Q |
1 |
tgcaatagttttaaaattagtgaacctggtaaagttgtgcttaccattgacaacaccaagttctataaagaaaaaccccttgtaccgcttaaaaaccaag |
100 |
Q |
| |
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||||| ||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||| |||||||| | |||||||||||| || |||||| |
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| T |
39895402 |
tgcaacagttttaaaattaatgaacctggtaaagttgttcttaccattgacaaca-caagttctaggaagaaaaagctcttgtaccgcttgaagaccaag |
39895500 |
T |
|
| Q |
101 |
tcttcactct-tgactgagaaaaatcatcatgttt------------atgtacagcgtgcaagaccaaaattgttttgtttgattatgttc-tcgtgtcc |
186 |
Q |
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||||||||| ||||||||| ||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
39895501 |
acttcactctctgactgagataaatcattatgtttgcacaagtgaaaatgtacaacgtgcaagaccaaaattgttttgtttgattatgttctttgtgtcc |
39895600 |
T |
|
| Q |
187 |
acttttaccactaaatgatcttctaattgaactttc |
222 |
Q |
| |
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||||||||||| ||||||||||| ||||| |||||| |
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| T |
39895601 |
acttttaccaccaaatgatcttcaaattgtactttc |
39895636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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