View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2837_low_54 (Length: 243)
Name: NF2837_low_54
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 14207925 - 14208069
Alignment:
| Q |
1 |
aagggcaccatatggcaattggagcattttttagtagatacctaaggctgagttagatacctataagcctgaagctgagagttttcacgctataataagc |
100 |
Q |
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| T |
14207925 |
aagggcaccatatgtcaattggagcattttttagtagatacctaaggctgagttagatacctataagcctgaagctgagagttttcacgctataataagc |
14208024 |
T |
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| Q |
101 |
agtatagatataggagtactcacagaattccaaaccagtttatct |
145 |
Q |
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| T |
14208025 |
agtatagatataagagtactcacagaattccaaaccagtttatct |
14208069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 2368503 - 2368651
Alignment:
| Q |
8 |
ccatatggcaattggagcattttttagtagatacctaaggctgagttagatac----ctataagcctgaagctgagagttttcacgctataataagcagt |
103 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2368503 |
ccatatgtcaattggagcattttttagtagatacctaaggctgagttagatacttaattataagcctgaagctgagagttttcacgctataataaatagt |
2368602 |
T |
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| Q |
104 |
atagatataggagtactcacagaattccaaaccagtttatctgttctgc |
152 |
Q |
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| T |
2368603 |
atagatataagagtactcacagaattccaaaccagtttatctattctgc |
2368651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 42302280 - 42302400
Alignment:
| Q |
10 |
atatggcaattggagcattttttagtagatacctaaggctgagttagatac----ctataagcctgaagctgagagttttcacgctataataagcagtat |
105 |
Q |
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| T |
42302280 |
atatgtcaattggagcatcttt-agtagatacctaaggctgagttagatacttaattataagcctgaaactaagagttttcacgctataataaatagtat |
42302378 |
T |
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| Q |
106 |
agatataggagtactcacagaa |
127 |
Q |
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|||| || |||||||||||||| |
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| T |
42302379 |
agatgtaagagtactcacagaa |
42302400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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