View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2837_low_59 (Length: 237)

Name: NF2837_low_59
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2837_low_59
NF2837_low_59
[»] chr4 (7 HSPs)
chr4 (1-222)||(1495940-1496161)
chr4 (1-219)||(1517520-1517741)
chr4 (1-219)||(1534011-1534233)
chr4 (5-40)||(1530063-1530098)
chr4 (49-195)||(1489409-1489555)
chr4 (74-163)||(640845-640934)
chr4 (74-162)||(7225964-7226052)
[»] chr3 (4 HSPs)
chr3 (74-215)||(13470760-13470901)
chr3 (80-183)||(51113841-51113944)
chr3 (74-215)||(51764468-51764609)
chr3 (83-185)||(514786-514888)
[»] chr2 (1 HSPs)
chr2 (49-215)||(45245113-45245279)
[»] chr6 (3 HSPs)
chr6 (74-171)||(19632369-19632466)
chr6 (81-165)||(9411292-9411376)
chr6 (64-215)||(6415886-6416037)
[»] chr8 (2 HSPs)
chr8 (65-195)||(18315321-18315451)
chr8 (94-215)||(34936191-34936312)
[»] chr1 (1 HSPs)
chr1 (74-183)||(7554418-7554527)
[»] chr5 (1 HSPs)
chr5 (81-129)||(12845530-12845578)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1496161 - 1495940
Alignment:
Q  1 caatatcaatgagacaagaacatcactgttcacattactgcaatttcgcaaattgatctcttgtagttgtgcacagttctctaccacatgcctaactccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1496161 caatatcaatgagacaagaacatcactgttcacattactgcaatttcgcaaattgatctcttgtagttgtgcacagttctctaccacatgcctaactccc 1496062  T
Q  101 ttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagattacaaagagtgcttcatcgttaacttttgtcattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1496061 ttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagattacaaagagtgcgtcatcgttaacttttgtcattg 1495962  T
Q  201 acaaatccaacaccttgaggtt 222  Q
    ||||||||||||||||||||||    
T  1495961 acaaatccaacaccttgaggtt 1495940  T

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Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 1517741 - 1517520
Alignment:
Q  1 caatatcaatgagacaagaacatcactgttcacatta---ctgcaatttcgcaaattgatctcttgtagttgtgcacagttctctaccacatgcctaact 97  Q
    |||||||||||||||||||||||||||||||||| ||   || ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1517741 caatatcaatgagacaagaacatcactgttcacaataatactacaatttctcaaattgatcttttgtagttgtgcacagttctctaccacatgcctaact 1517642  T
Q  98 cccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagattacaaagagtgcttcatcgttaacttttgtca 197  Q
    ||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  1517641 cccttctctgtgacatcatgacaattttccagtaatagtttcaaaattccacgacaattctttgagattacaaagagtgcgtcatcgttaactcttgtca 1517542  T
Q  198 ttgacaaatccaacaccttgag 219  Q
    ||||||||| ||||||||||||    
T  1517541 ttgacaaattcaacaccttgag 1517520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 1534233 - 1534011
Alignment:
Q  1 caatatcaatgagacaagaacatcactgttcacattactgcaatttcgcaaattgatctcttgtagttgtgcacagttctctaccacatgcctaactccc 100  Q
    ||||||||||||| ||||||||||||| ||||||||||  |||| |  ||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  1534233 caatatcaatgaggcaagaacatcacttttcacattacaacaatatatcaaatcgatctcttgtagttgtgcacagttctctaccacatgcttaactccc 1534134  T
Q  101 ttctctgtga----tatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagattacaaagagtgcttcatcgttaacttttgtc 196  Q
    ||||||||||     ||||| |||||  | |||| || |||||||||||||||||||| |||| ||||||||||||||||| || ||||||||| ||||     
T  1534133 ttctctgtgacatgcatcatcacaatcgttcagtgatagttgcaaaattccacgacaagtcttcgagattacaaagagtgcgtcgtcgttaactcttgtg 1534034  T
Q  197 attgacaaatccaacaccttgag 219  Q
     ||||||| ||||||||||||||    
T  1534033 cttgacaattccaacaccttgag 1534011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 1530098 - 1530063
Alignment:
Q  5 atcaatgagacaagaacatcactgttcacattactg 40  Q
    ||||||||| ||||||||||||||||||||||||||    
T  1530098 atcaatgaggcaagaacatcactgttcacattactg 1530063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 195
Target Start/End: Complemental strand, 1489555 - 1489409
Alignment:
Q  49 caaattgatctcttgtagttgtgcacagttctctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattcca 148  Q
    |||||||||||||  ||||||||| || || |||| ||||||| | |||||||||||||||| || |  |||   |||||||||  |||||||||  |||    
T  1489555 caaattgatctctcttagttgtgcgcatttttctagcacatgcttcactcccttctctgtgacattaaaacacccttccagtaagagttgcaaaagccca 1489456  T
Q  149 cgacaattctttgagattacaaagagtgcttcatcgttaacttttgt 195  Q
    || |||  | ||||||||||| | |||| ||| | |||||| |||||    
T  1489455 cggcaacacattgagattacacacagtgtttcgttgttaacatttgt 1489409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 163
Target Start/End: Original strand, 640845 - 640934
Alignment:
Q  74 cagttctctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgag 163  Q
    ||||| |||||||||||  | |||||||||| ||| | || |||||||| |||||||||  | |||||||  ||||| ||||||||||||    
T  640845 cagttttctaccacatgattcactcccttctttgttacataatgacaatcttccagtaacagatgcaaaagaccacggcaattctttgag 640934  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 162
Target Start/End: Complemental strand, 7226052 - 7225964
Alignment:
Q  74 cagttctctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttga 162  Q
    ||||| |||||||| ||| | | ||||||||| ||||  |||  |||| ||||||||||| ||||||||| ||||| |||| |||||||    
T  7226052 cagttttctaccacgtgcttcaatcccttctcggtgacctcaaaacaactttccagtaatagttgcaaaagtccacaacaactctttga 7225964  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 215
Target Start/End: Complemental strand, 13470901 - 13470760
Alignment:
Q  74 cagttctctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagattacaaaga 173  Q
    |||||||||||||||||  | |||||||  ||||||| || |||||||  ||| |||||| |||||||||  |||| ||||||||||||||| | | |||    
T  13470901 cagttctctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattctttgagatcatataga 13470802  T
Q  174 gtgcttcatcgttaacttttgtcattgacaaatccaacacct 215  Q
    ||| || ||| ||||| |||||  ||||||| | ||||||||    
T  13470801 gtgttttatcattaacctttgtatttgacaagttcaacacct 13470760  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 51113944 - 51113841
Alignment:
Q  80 tctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagattacaaagagtgctt 179  Q
    |||||||||||| | |||||||||||||||| ||  | |||||||| ||||||  |||||||||  |||| |||| |||| ||||| ||| |||||| ||    
T  51113944 tctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactcttcgagatcacatagagtgttt 51113845  T
Q  180 catc 183  Q
    ||||    
T  51113844 catc 51113841  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 215
Target Start/End: Complemental strand, 51764609 - 51764468
Alignment:
Q  74 cagttctctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagattacaaaga 173  Q
    ||||| || ||||||||  | |||||||||||  ||| || || ||||| |||||||||| |||||||||  || | |||||||||||||||  || |||    
T  51764609 cagttttcaaccacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattctttgagatcgcataga 51764510  T
Q  174 gtgcttcatcgttaacttttgtcattgacaaatccaacacct 215  Q
    ||| || ||| | ||||||||| | |||||| || |||||||    
T  51764509 gtgttttatcatcaacttttgtaaatgacaagtctaacacct 51764468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 514888 - 514786
Alignment:
Q  83 accacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagattacaaagagtgcttcat 182  Q
    ||||||||| | |||||| ||||||||||| | | |||||||| ||||||| |||||||||  ||||  ||| |||| ||||| |||   ||||||||||    
T  514888 accacatgcttcactcccgtctctgtgataccttcacaattttgcagtaatagttgcaaaagcccacagcaactcttcgagatcacatgaagtgcttcat 514789  T
Q  183 cgt 185  Q
    |||    
T  514788 cgt 514786  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 215
Target Start/End: Complemental strand, 45245279 - 45245113
Alignment:
Q  49 caaattgatctcttgtagttgtgcacagttctctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattcca 148  Q
    |||||||||||||   |||||||  || || |||||||||||  | |||||||| ||||||| || || ||| |||| || |||| |||||||||  |||    
T  45245279 caaattgatctctgtaagttgtgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagccca 45245180  T
Q  149 cgacaattctttgagattacaaagagtgcttcatcgttaacttttgtcattgacaaatccaacacct 215  Q
    |||||| |||||||||| |||  ||||| |||||| | |||  |||||  |||||||| ||||||||    
T  45245179 cgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacct 45245113  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 19632369 - 19632466
Alignment:
Q  74 cagttctctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagattacaaa 171  Q
    ||||| |||||||| ||  | ||||||||||||||||||| |  |||||||| ||||||  |||||||||  |||| ||||||||||||||| |||||    
T  19632369 cagttttctaccacgtgtttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttgagatcacaaa 19632466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 9411292 - 9411376
Alignment:
Q  81 ctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagat 165  Q
    ||||||||||| | |||||||| ||| ||| || ||||||   || ||||||  ||||||||| |||||||||||||||||||||    
T  9411292 ctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagat 9411376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 215
Target Start/End: Original strand, 6415886 - 6416037
Alignment:
Q  64 tagttgtgcacagttctctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgag 163  Q
    ||||||||  |||||||||||||||||  | ||||||   ||||||| || || ||||  ||| |||||| |||||||||  || | |||||||||||||    
T  6415886 tagttgtgtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgag 6415985  T
Q  164 attacaaagagtgcttcatcgttaacttttgtcattgacaaatccaacacct 215  Q
    || ||| |||| | || ||| ||||| |||||  ||||||| | ||||||||    
T  6415986 atcacatagagagttttatcattaacctttgtatttgacaagttcaacacct 6416037  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 195
Target Start/End: Complemental strand, 18315451 - 18315321
Alignment:
Q  65 agttgtgcacagttctctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgaga 164  Q
    |||||||  ||||| |||||||||| | |  |||| |||||||||| ||||  |||   ||||| |||  |||||||||  | ||||||| |||||||||    
T  18315451 agttgtgtgcagttttctaccacatacttttctcctttctctgtgacatcacaacagcgttccaataacagttgcaaaagcctacgacaactctttgaga 18315352  T
Q  165 ttacaaagagtgcttcatcgttaacttttgt 195  Q
    | ||| ||||||||||||| | |||||||||    
T  18315351 tcacatagagtgcttcatcatcaacttttgt 18315321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 34936312 - 34936191
Alignment:
Q  94 aactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagattacaaagagtgcttcatcgttaactttt 193  Q
    |||||||||||| |||| ||||  ||||||||  |||||| |||||||||  ||||||||| |||||| |||  || |||||| || ||| | |||| ||    
T  34936312 aactcccttctccgtgacatcacaacaattttgaagtaatagttgcaaaagcccacgacaactctttgcgatggcatagagtgttttatcatcaactctt 34936213  T
Q  194 gtcattgacaaatccaacacct 215  Q
    ||   |||||| ||||||||||    
T  34936212 gtatatgacaagtccaacacct 34936191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 7554418 - 7554527
Alignment:
Q  74 cagttctctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagattacaaaga 173  Q
    ||||| |||||||||||| | |||||||| ||||||| || || |||   || ||||||  |||| |||| ||||| |||| |||||||||| | | |||    
T  7554418 cagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtccaccacaactctttgagatcatataga 7554517  T
Q  174 gtgcttcatc 183  Q
    ||||||||||    
T  7554518 gtgcttcatc 7554527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 12845530 - 12845578
Alignment:
Q  81 ctaccacatgcctaactcccttctctgtgatatcatgacaattttccag 129  Q
    ||||||| ||||| |||||||||||||| | ||||| ||||||||||||    
T  12845530 ctaccacttgcctcactcccttctctgtaacatcattacaattttccag 12845578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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