View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2837_low_63 (Length: 216)
Name: NF2837_low_63
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_low_63 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 7446362 - 7446163
Alignment:
| Q |
17 |
aagaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaannnnnnnaagactgaagtactcttcttcaagt |
116 |
Q |
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| T |
7446362 |
aagaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaatttttttaagactgaagtactcttcttcaagt |
7446263 |
T |
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| Q |
117 |
ttcttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgact |
216 |
Q |
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| T |
7446262 |
ttcttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgact |
7446163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 7461306 - 7461107
Alignment:
| Q |
17 |
aagaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaannnnnnnaagactgaagtactcttcttcaagt |
116 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7461306 |
aagaagaggaagaaagaggtataccttggtttcaaggagacacttctcaagaatggtggattcatgattttttttaagactgaagtactcttcttcaagt |
7461207 |
T |
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| Q |
117 |
ttcttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgact |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7461206 |
ttcttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgact |
7461107 |
T |
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