View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2837_low_65 (Length: 203)

Name: NF2837_low_65
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2837_low_65
NF2837_low_65
[»] chr1 (10 HSPs)
chr1 (1-203)||(32186412-32186614)
chr1 (133-184)||(49035290-49035341)
chr1 (133-195)||(788278-788340)
chr1 (133-186)||(1674771-1674824)
chr1 (133-179)||(2655746-2655792)
chr1 (133-186)||(11238247-11238300)
chr1 (133-186)||(32769028-32769081)
chr1 (133-186)||(52414973-52415026)
chr1 (133-197)||(10430513-10430577)
chr1 (134-186)||(39157128-39157180)
[»] chr8 (13 HSPs)
chr8 (128-185)||(34870560-34870617)
chr8 (130-183)||(5870786-5870839)
chr8 (133-186)||(16599375-16599428)
chr8 (133-186)||(2742935-2742988)
chr8 (133-186)||(39628287-39628340)
chr8 (133-186)||(39637837-39637890)
chr8 (132-179)||(27166723-27166770)
chr8 (133-186)||(7578205-7578258)
chr8 (133-186)||(14896663-14896716)
chr8 (133-186)||(38401600-38401653)
chr8 (133-186)||(38457305-38457358)
chr8 (133-170)||(45083040-45083077)
chr8 (132-164)||(32481378-32481410)
[»] chr5 (14 HSPs)
chr5 (120-184)||(34492669-34492733)
chr5 (133-186)||(20201670-20201723)
chr5 (133-199)||(6434055-6434121)
chr5 (25-179)||(9948781-9948939)
chr5 (133-186)||(32474210-32474263)
chr5 (128-179)||(14967140-14967191)
chr5 (136-187)||(17202827-17202878)
chr5 (123-165)||(34766295-34766337)
chr5 (133-186)||(249542-249595)
chr5 (133-186)||(1583492-1583545)
chr5 (133-186)||(14654961-14655014)
chr5 (133-198)||(19922171-19922235)
chr5 (133-198)||(19924921-19924985)
chr5 (133-198)||(19931870-19931934)
[»] chr3 (10 HSPs)
chr3 (130-184)||(633286-633340)
chr3 (133-187)||(25485840-25485894)
chr3 (134-186)||(15772305-15772357)
chr3 (133-187)||(25479621-25479675)
chr3 (128-182)||(41949720-41949774)
chr3 (136-184)||(38416354-38416402)
chr3 (133-179)||(19187672-19187718)
chr3 (133-179)||(20141017-20141063)
chr3 (133-186)||(9588777-9588830)
chr3 (133-186)||(44940867-44940920)
[»] chr6 (6 HSPs)
chr6 (133-198)||(7972623-7972688)
chr6 (133-186)||(12400739-12400792)
chr6 (133-186)||(34889095-34889148)
chr6 (133-186)||(6111126-6111179)
chr6 (133-185)||(8049213-8049265)
chr6 (133-169)||(9353154-9353190)
[»] chr7 (5 HSPs)
chr7 (133-200)||(4678435-4678502)
chr7 (133-186)||(10535010-10535063)
chr7 (132-186)||(27300044-27300098)
chr7 (133-179)||(28226580-28226626)
chr7 (133-191)||(35792367-35792425)
[»] chr2 (18 HSPs)
chr2 (133-183)||(4316731-4316781)
chr2 (133-187)||(41541078-41541132)
chr2 (133-186)||(1770182-1770235)
chr2 (133-198)||(7486307-7486372)
chr2 (128-184)||(14371150-14371207)
chr2 (141-184)||(31741919-31741962)
chr2 (133-184)||(36244041-36244092)
chr2 (133-179)||(150289-150335)
chr2 (133-179)||(20171449-20171495)
chr2 (128-186)||(34847123-34847181)
chr2 (133-186)||(11083936-11083989)
chr2 (133-186)||(27746501-27746554)
chr2 (133-186)||(31193810-31193863)
chr2 (133-170)||(32113373-32113410)
chr2 (133-170)||(33659591-33659628)
chr2 (133-186)||(33659736-33659789)
chr2 (133-170)||(44898144-44898181)
chr2 (133-185)||(21252614-21252666)
[»] scaffold0005 (2 HSPs)
scaffold0005 (133-186)||(256778-256831)
scaffold0005 (61-105)||(272457-272501)
[»] chr4 (13 HSPs)
chr4 (133-186)||(1821590-1821643)
chr4 (130-187)||(25490493-25490550)
chr4 (133-185)||(25493859-25493911)
chr4 (131-170)||(42219055-42219094)
chr4 (133-179)||(45635461-45635507)
chr4 (133-186)||(668029-668082)
chr4 (133-186)||(2492877-2492930)
chr4 (133-186)||(9089616-9089669)
chr4 (133-186)||(24538306-24538359)
chr4 (130-175)||(37234473-37234518)
chr4 (133-186)||(46195780-46195833)
chr4 (133-165)||(24074134-24074166)
chr4 (130-158)||(27650854-27650882)
[»] scaffold1130 (1 HSPs)
scaffold1130 (132-165)||(418-451)
[»] scaffold0118 (1 HSPs)
scaffold0118 (133-170)||(14952-14989)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 32186412 - 32186614
Alignment:
Q  1 caacttaattacttcgttagtttcttttcaagtgttgtttgatgtataaacttttgttaatattttactgtcgttttgatactttaatggtaaaatttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32186412 caacttaattacttcgttagtttcttttcaagtgttgtttgatgtataaacttttgttaatatttaactgtcgttttgatactttaatggtaaaatttgt 32186511  T
Q  101 caattgagatatttcttaattatactcactcattttcaataaaactaattaatgttatgtatttgtaaaattcaagtttattttttgaaataaaatttaa 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  32186512 caattgagatatttcttaattatactcactcatttttaataaaactaattaatgttatgtatttgcaaaattcaagtttattttttgaaacaaaatttaa 32186611  T
Q  201 gct 203  Q
    |||    
T  32186612 gct 32186614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 49035290 - 49035341
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttt 184  Q
    ||||||||||||||||| || ||||| |||||| ||||||||||||||||||    
T  49035290 ttttcaataaaactaatcaaagttatttatttgaaaaattcaagtttatttt 49035341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 788340 - 788278
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttattttttgaaataaaa 195  Q
    |||||||||||||||||||||||||| |||||| |||| | |||||| |||||| ||| ||||    
T  788340 ttttcaataaaactaattaatgttatatatttggaaaaataaagtttgttttttaaaacaaaa 788278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 1674824 - 1674771
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||||||||||||||||||||||||| |||||| |||| | |||||| ||||||    
T  1674824 ttttcaataaaactaattaatgttatatatttgaaaaactaaagtttgtttttt 1674771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 2655746 - 2655792
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagttt 179  Q
    |||||||||||||||||||||||||| |||||| |||| | ||||||    
T  2655746 ttttcaataaaactaattaatgttatatatttggaaaactaaagttt 2655792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 11238300 - 11238247
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||||||||||||||||||||| ||| |||||| |||| | || ||||||||||    
T  11238300 ttttcaataaaactaattaatgatatatatttggaaaactaaaatttatttttt 11238247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 32769028 - 32769081
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||| ||||||||||||||||| ||| |||||| |||| | |||||||||||||    
T  32769028 tttttaataaaactaattaatgatatatatttgaaaaactaaagtttatttttt 32769081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 52414973 - 52415026
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||| ||||||||||||||||||||| |||||| |||| | |||||| ||||||    
T  52414973 tttttaataaaactaattaatgttatatatttggaaaactaaagtttgtttttt 52415026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 10430577 - 10430513
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttattttttgaaataaaatt 197  Q
    |||| ||||||||||||||||| ||| |||||| |||| |||||||| | |||| ||| ||||||    
T  10430577 tttttaataaaactaattaatgctatatatttgcaaaactcaagtttgtatttttaaacaaaatt 10430513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 39157128 - 39157180
Alignment:
Q  134 tttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||||||| |||||||||||||||| |||||| |||| | |||||| ||||||    
T  39157128 tttcaatagaactaattaatgttatatatttgaaaaactaaagtttgtttttt 39157180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 34870617 - 34870560
Alignment:
Q  128 actcattttcaataaaactaattaatgttatgtatttgtaaaattcaagtttattttt 185  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||||||||||| |||||    
T  34870617 actccttttcaataaacctaattaatgttatgtatttggaaaattcaagttttttttt 34870560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 5870786 - 5870839
Alignment:
Q  130 tcattttcaataaaactaattaatgttatgtatttgtaaaattcaagtttattt 183  Q
    ||||||||||||||||||||||||||||| |||||| |||| | ||||||||||    
T  5870786 tcattttcaataaaactaattaatgttatctatttgaaaaactaaagtttattt 5870839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 16599428 - 16599375
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||||||||||||||||||||| ||| ||||||||||| | |||||||||||||    
T  16599428 ttttcaataaaactaattaatgatatatatttgtaaaactaaagtttatttttt 16599375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 2742988 - 2742935
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||||||||||||||||||||| ||| |||||| |||||| |||||| ||||||    
T  2742988 ttttcaataaaactaattaatgctatatatttgaaaaattaaagtttgtttttt 2742935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 39628340 - 39628287
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||||||||||||||||||||||||| |||||| |||| | |||||| ||||||    
T  39628340 ttttcaataaaactaattaatgttatctatttggaaaactaaagtttgtttttt 39628287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 39637890 - 39637837
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||||||||||||||||||||||||| |||||| |||| | |||||| ||||||    
T  39637890 ttttcaataaaactaattaatgttatctatttggaaaactaaagtttgtttttt 39637837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 179
Target Start/End: Complemental strand, 27166770 - 27166723
Alignment:
Q  132 attttcaataaaactaattaatgttatgtatttgtaaaattcaagttt 179  Q
    |||||||||||||||||||||||||||   |||| |||||||||||||    
T  27166770 attttcaataaaactaattaatgttatacgtttgaaaaattcaagttt 27166723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 7578258 - 7578205
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||||||||||||||||||||| ||| |||||  |||||| |||||| ||||||    
T  7578258 ttttcaataaaactaattaatgctatatatttaaaaaattaaagtttgtttttt 7578205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 14896663 - 14896716
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||||||||||||||||||||||||| |||||  |||| | |||||| ||||||    
T  14896663 ttttcaataaaactaattaatgttatatatttaaaaaacttaagtttgtttttt 14896716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 38401600 - 38401653
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||| ||||||| ||||||||||||| |||||  |||||| |||||||||||||    
T  38401600 tttttaataaaattaattaatgttatttatttcgaaaattaaagtttatttttt 38401653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 38457305 - 38457358
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||||||||||||||||||||| ||| |||||| |||| | |||||| ||||||    
T  38457305 ttttcaataaaactaattaatgctatctatttggaaaactaaagtttgtttttt 38457358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 45083077 - 45083040
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaa 170  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  45083077 ttttcaataaaactaattaatgtaatgtatttggaaaa 45083040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Complemental strand, 32481410 - 32481378
Alignment:
Q  132 attttcaataaaactaattaatgttatgtattt 164  Q
    |||||||||||||||||||||| ||||||||||    
T  32481410 attttcaataaaactaattaatattatgtattt 32481378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 34492733 - 34492669
Alignment:
Q  120 ttatactcactcattttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttt 184  Q
    ||||||| ||||||||| ||||||||||||| ||||||| |||||| |||| |||||||||||||    
T  34492733 ttatacttactcatttttaataaaactaattcatgttatctatttgaaaaactcaagtttatttt 34492669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 20201670 - 20201723
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||||||||||||||||||||||||| |||||| |||| | |||||||||||||    
T  20201670 ttttcaataaaactaattaatgttatatatttggaaaactaaagtttatttttt 20201723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 6434121 - 6434055
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttattttttgaaataaaattta 199  Q
    ||||||||||| ||||||||| |||| |||||| |||||| |||||| |||||| ||||||| ||||    
T  6434121 ttttcaataaatctaattaatattatctatttgaaaaatttaagtttgtttttttaaataaagttta 6434055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 179
Target Start/End: Complemental strand, 9948939 - 9948781
Alignment:
Q  25 ttttcaagtgttgtttgatgtataaacttttgttaatattttactgtcgttttgatactttaatggtaaaatttgtcaattgagatatttcttaatt--- 121  Q
    |||| |||||||||||||||| |||  |||||||  ||||| |||| |||||||||| || || |||| ||||||||||||    ||||||| ||||       
T  9948939 tttttaagtgttgtttgatgtttaattttttgtttctatttaactgacgttttgataattcaagggtagaatttgtcaattatactatttctcaattact 9948840  T
Q  122 -atactcactcattttcaataaaactaattaatgttatgtatttgtaaaattcaagttt 179  Q
     || || |  || ||||||||||||||| |||| ||| ||||||  |||||||||||||    
T  9948839 catgcttatccactttcaataaaactaactaattttaagtatttagaaaattcaagttt 9948781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 32474210 - 32474263
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||||||||||||||||||||| ||| |||||| |||||| |||||| ||||||    
T  32474210 ttttcaataaaactaattaatgctatctatttggaaaattaaagtttgtttttt 32474263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 14967140 - 14967191
Alignment:
Q  128 actcattttcaataaaactaattaatgttatgtatttgtaaaattcaagttt 179  Q
    |||| |||||||||||||||||||||||||| |||||  |||| ||||||||    
T  14967140 actctttttcaataaaactaattaatgttatctatttagaaaactcaagttt 14967191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 17202878 - 17202827
Alignment:
Q  136 tcaataaaactaattaatgttatgtatttgtaaaattcaagtttattttttg 187  Q
    ||||||||||||||||||||||| |||||| |||| | |||||| |||||||    
T  17202878 tcaataaaactaattaatgttatctatttggaaaactaaagtttgttttttg 17202827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 34766295 - 34766337
Alignment:
Q  123 tactcactcattttcaataaaactaattaatgttatgtatttg 165  Q
    |||| ||||||||||||||||||||||||||||| | ||||||    
T  34766295 tacttactcattttcaataaaactaattaatgttgtatatttg 34766337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 249595 - 249542
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||| ||||||||||||||||| ||| |||||| |||| | |||||||||||||    
T  249595 tttttaataaaactaattaatgctatatatttggaaaactaaagtttatttttt 249542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 1583492 - 1583545
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||||||||||||||||||||| ||| |||||| |||| | |||||| ||||||    
T  1583492 ttttcaataaaactaattaatgctatctatttggaaaactaaagtttttttttt 1583545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 14654961 - 14655014
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||||||||||||||||||||| ||| |||||| |||| | |||||| ||||||    
T  14654961 ttttcaataaaactaattaatgctatatatttggaaaactaaagtttgtttttt 14655014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 19922171 - 19922235
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttattttttgaaataaaattt 198  Q
    |||||||||||||||||| ||||||| |||||| |||| | |||||| |||||| ||| |||||||    
T  19922171 ttttcaataaaactaattcatgttatatatttg-aaaactaaagtttgttttttaaaacaaaattt 19922235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 19924921 - 19924985
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttattttttgaaataaaattt 198  Q
    |||||||||||||||||| ||||||| |||||| |||| | |||||| |||||| ||| |||||||    
T  19924921 ttttcaataaaactaattcatgttatatatttg-aaaactaaagtttgttttttaaaacaaaattt 19924985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 19931870 - 19931934
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttattttttgaaataaaattt 198  Q
    |||||||||||||||||| ||||||| |||||| |||| | |||||| |||||| ||| |||||||    
T  19931870 ttttcaataaaactaattcatgttatatatttg-aaaactaaagtttgttttttaaaacaaaattt 19931934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 633340 - 633286
Alignment:
Q  130 tcattttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttt 184  Q
    ||||||||||||||||||||||||||||| |||||| |||| | |||||||||||    
T  633340 tcattttcaataaaactaattaatgttatatatttggaaaactaaagtttatttt 633286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 25485840 - 25485894
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttattttttg 187  Q
    |||||||||||||||||| ||||||| |||||| ||||||||| |||||||||||    
T  25485840 ttttcaataaaactaattgatgttatatatttggaaaattcaaatttattttttg 25485894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 15772305 - 15772357
Alignment:
Q  134 tttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    ||||||||||||||||||||||||| |||||| ||||||| ||||| ||||||    
T  15772305 tttcaataaaactaattaatgttatctatttgaaaaattcgagtttgtttttt 15772357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 25479621 - 25479675
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttattttttg 187  Q
    |||||||| ||||||||||||||||| |||||| |||||| |||||| |||||||    
T  25479621 ttttcaatcaaactaattaatgttatatatttgaaaaatttaagtttgttttttg 25479675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 41949720 - 41949774
Alignment:
Q  128 actcattttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatt 182  Q
    ||||||||| ||||||||||||||||  |||||||||| |||| |||||||||||    
T  41949720 actcattttgaataaaactaattaatcgtatgtatttggaaaactcaagtttatt 41949774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 38416402 - 38416354
Alignment:
Q  136 tcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttt 184  Q
    |||||||||||||||||||||||  ||||| ||||||||||||| ||||    
T  38416402 tcaataaaactaattaatgttatccatttgaaaaattcaagtttgtttt 38416354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 19187718 - 19187672
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagttt 179  Q
    |||||||||||||||||||||| ||| |||||| |||||| ||||||    
T  19187718 ttttcaataaaactaattaatgatatatatttgaaaaattaaagttt 19187672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 20141063 - 20141017
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagttt 179  Q
    ||||||||||||| ||||||||||||||||||  |||||| ||||||    
T  20141063 ttttcaataaaacaaattaatgttatgtatttaaaaaattaaagttt 20141017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 9588777 - 9588830
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    ||||||| |||||||||||||||||| |||||| |||| | |||||| ||||||    
T  9588777 ttttcaaaaaaactaattaatgttatatatttggaaaactaaagtttgtttttt 9588830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 44940920 - 44940867
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||| ||||||||||||||||| ||| |||||| |||||| |||||| ||||||    
T  44940920 tttttaataaaactaattaatgctatatatttgaaaaattaaagtttgtttttt 44940867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 7972688 - 7972623
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttattttttgaaataaaattt 198  Q
    |||||||||||||||||||||||||| |||||| |||| | |||||| |||||| ||| |||||||    
T  7972688 ttttcaataaaactaattaatgttatatatttgaaaaactaaagtttgtttttttaaacaaaattt 7972623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 12400792 - 12400739
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    ||||||||||||||| ||||||| |||||||||||||||| |||||| ||||||    
T  12400792 ttttcaataaaactagttaatgtcatgtatttgtaaaattaaagtttttttttt 12400739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 34889095 - 34889148
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    ||||||||||||||||||| |||||| |||||| |||||| |||||| ||||||    
T  34889095 ttttcaataaaactaattattgttatatatttgaaaaattaaagtttgtttttt 34889148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 6111179 - 6111126
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||| ||||||||||||||||||||| |||||| |||| | |||||| ||||||    
T  6111179 ttttaaataaaactaattaatgttatatatttggaaaactaaagtttgtttttt 6111126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 8049213 - 8049265
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttattttt 185  Q
    |||||||||||||||||||||| ||| |||||| |||| | |||||| |||||    
T  8049213 ttttcaataaaactaattaatgatatctatttggaaaactaaagtttgttttt 8049265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 9353154 - 9353190
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaa 169  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  9353154 ttttcaataaaactaattaatgctatctatttgtaaa 9353190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 4678435 - 4678502
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttattttttgaaataaaatttaa 200  Q
    |||||||||||||||||||||||||| |||||| |||| | |||| | |||||| ||| |||||||||    
T  4678435 ttttcaataaaactaattaatgttatatatttggaaaactaaagtatgtttttttaaacaaaatttaa 4678502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 10535063 - 10535010
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    ||||||||||||||||||||||| || |||||| |||||| |||||| ||||||    
T  10535063 ttttcaataaaactaattaatgtaatctatttgaaaaattaaagtttttttttt 10535010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 27300044 - 27300098
Alignment:
Q  132 attttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    ||||||||||||||||||||| | || ||||||  ||||||||||||| ||||||    
T  27300044 attttcaataaaactaattaaaggtaagtattttgaaaattcaagtttttttttt 27300098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 28226580 - 28226626
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagttt 179  Q
    |||||||||||||||||||||||||| |||||| |||| | ||||||    
T  28226580 ttttcaataaaactaattaatgttatatatttgaaaaactaaagttt 28226626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 35792367 - 35792425
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttattttttgaaat 191  Q
    ||||||| |||||||| ||||||||| | |||| ||||||||||||| |||||| ||||    
T  35792367 ttttcaacaaaactaaataatgttatctgtttgaaaaattcaagtttctttttttaaat 35792425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 4316731 - 4316781
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttattt 183  Q
    |||||||||||||||||||||||||| |||||| |||| | ||||||||||    
T  4316731 ttttcaataaaactaattaatgttatatatttggaaaactaaagtttattt 4316781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 41541078 - 41541132
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttattttttg 187  Q
    |||||||||||||||||||||| ||| |||||| |||| | ||||||||||||||    
T  41541078 ttttcaataaaactaattaatgctatatatttgaaaaactaaagtttattttttg 41541132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 1770235 - 1770182
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||||||||||||||||||||||||| |||||| |||| | |||||| ||||||    
T  1770235 ttttcaataaaactaattaatgttatatatttgaaaaactaaagtttgtttttt 1770182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 7486372 - 7486307
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttattttttgaaataaaattt 198  Q
    |||||||||||||||||||||||||| |||||| |||| | |||| | |||||| ||| |||||||    
T  7486372 ttttcaataaaactaattaatgttatatatttggaaaactaaagtctgtttttttaaacaaaattt 7486307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 14371207 - 14371150
Alignment:
Q  128 actcattttcaataaaa-ctaattaatgttatgtatttgtaaaattcaagtttatttt 184  Q
    |||| |||||||||||| |||||||||| |||||||||| ||||||||||||| ||||    
T  14371207 actctttttcaataaaaactaattaatgatatgtatttgaaaaattcaagtttgtttt 14371150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 31741919 - 31741962
Alignment:
Q  141 aaaactaattaatgttatgtatttgtaaaattcaagtttatttt 184  Q
    |||||||||||||||||| |||||| ||||||||||||| ||||    
T  31741919 aaaactaattaatgttatatatttgaaaaattcaagtttgtttt 31741962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 36244092 - 36244041
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttt 184  Q
    |||| ||||||||||||||||||||| |||||| |||| | |||||||||||    
T  36244092 tttttaataaaactaattaatgttatatatttggaaaactaaagtttatttt 36244041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 150335 - 150289
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagttt 179  Q
    |||||||||||||||||||||||||| |||||| |||| | ||||||    
T  150335 ttttcaataaaactaattaatgttatatatttgaaaaactaaagttt 150289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 20171495 - 20171449
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagttt 179  Q
    |||||||||||||||||||||||||| |||||| |||| | ||||||    
T  20171495 ttttcaataaaactaattaatgttatatatttggaaaactaaagttt 20171449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 34847181 - 34847123
Alignment:
Q  128 actcattttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||| |||||||| |||||||||||| |||||||||| |||| ||||| ||| ||||||    
T  34847181 actctttttcaattaaactaattaatattatgtatttataaagttcaaatttgtttttt 34847123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 11083936 - 11083989
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||| ||||||||||||||||||||| |||||| |||| | |||||| ||||||    
T  11083936 tttttaataaaactaattaatgttatatatttgaaaaactaaagtttgtttttt 11083989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 27746501 - 27746554
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||||||||||||||||||||| ||| |||||| |||| |  ||||||||||||    
T  27746501 ttttcaataaaactaattaatgctatatatttgaaaaactacagtttatttttt 27746554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 31193810 - 31193863
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    ||||||||||||||||||||| |||| |||||| |||||| ||| || ||||||    
T  31193810 ttttcaataaaactaattaatattatttatttggaaaattaaaggttttttttt 31193863  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 32113410 - 32113373
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaa 170  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  32113410 ttttcaataaaactaattaatgttatatatttggaaaa 32113373  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 33659591 - 33659628
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaa 170  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  33659591 ttttcaataaaactaattaatgttatatatttggaaaa 33659628  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 33659736 - 33659789
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    ||||||||||||||||||||| |||| |||||| |||| | |||||| ||||||    
T  33659736 ttttcaataaaactaattaatattatatatttgaaaaactgaagtttgtttttt 33659789  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 44898144 - 44898181
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaa 170  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  44898144 ttttcaataaaactaattaatgttatatatttgaaaaa 44898181  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 21252614 - 21252666
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttattttt 185  Q
    |||||||||||| ||||||||| ||| |||||| |||| | ||||||||||||    
T  21252614 ttttcaataaaattaattaatgctatctatttgaaaaactaaagtttattttt 21252666  T

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Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 256778 - 256831
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||||||||||||||||||||||||| |||||| |||| | |||||| ||||||    
T  256778 ttttcaataaaactaattaatgttatctatttggaaaactaaagtttttttttt 256831  T

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Target: scaffold0005; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 272501 - 272457
Alignment:
Q  61 tattttactgtcgttttgatactttaatggtaaaatttgtcaatt 105  Q
    ||||| ||||||||||||||| |||||||||| ||||| ||||||    
T  272501 tatttaactgtcgttttgatattttaatggtacaatttatcaatt 272457  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 1821643 - 1821590
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||||| ||||||||||||||| ||| |||||| |||||| |||||||||||||    
T  1821643 ttttcagtaaaactaattaatgatatctatttggaaaattaaagtttatttttt 1821590  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 25490493 - 25490550
Alignment:
Q  130 tcattttcaataaaactaattaatgttatgtatttgtaaaattcaagtttattttttg 187  Q
    ||||||||||||||| ||||||||||||| |||||| |||| | |||||| |||||||    
T  25490493 tcattttcaataaaaataattaatgttatatatttggaaaactaaagtttgttttttg 25490550  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 25493859 - 25493911
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttattttt 185  Q
    |||||||||||||||||||||||||| |||||| |||| | |||||| |||||    
T  25493859 ttttcaataaaactaattaatgttatctatttggaaaactaaagtttgttttt 25493911  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 42219094 - 42219055
Alignment:
Q  131 cattttcaataaaactaattaatgttatgtatttgtaaaa 170  Q
    |||||||||||||||||||||||||||| |||||| ||||    
T  42219094 cattttcaataaaactaattaatgttatatatttggaaaa 42219055  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 45635507 - 45635461
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagttt 179  Q
    |||||||||||||||||||||||||| |||||| |||| | ||||||    
T  45635507 ttttcaataaaactaattaatgttatatatttggaaaactaaagttt 45635461  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 668082 - 668029
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||| ||||||||||||||||||||| |||||| |||| | |||||| ||||||    
T  668082 ttttaaataaaactaattaatgttatatatttggaaaactaaagtttgtttttt 668029  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 2492877 - 2492930
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||| ||||||||||||||||| ||| |||||| |||| | |||||||||||||    
T  2492877 tttttaataaaactaattaatgctatctatttgaaaaactaaagtttatttttt 2492930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 9089669 - 9089616
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||||||||||||||||||||| ||| |||||| |||||| ||| || ||||||    
T  9089669 ttttcaataaaactaattaatgctatctatttgaaaaattaaagcttttttttt 9089616  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 24538359 - 24538306
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    ||||||||||||||||||| |||||| |||||| |||| | |||||| ||||||    
T  24538359 ttttcaataaaactaattagtgttatatatttggaaaactaaagtttgtttttt 24538306  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 37234473 - 37234518
Alignment:
Q  130 tcattttcaataaaactaattaatgttatgtatttgtaaaattcaa 175  Q
    |||||||||||||||||||||||| || | |||||| |||||||||    
T  37234473 tcattttcaataaaactaattaatattgtatatttggaaaattcaa 37234518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 46195780 - 46195833
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaattcaagtttatttttt 186  Q
    |||||| |||||||||||||||||||  ||||| |||||| |||||| ||||||    
T  46195780 ttttcagtaaaactaattaatgttatcaatttgaaaaattaaagtttgtttttt 46195833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 24074166 - 24074134
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttg 165  Q
    |||||||||||||||||||||||||| ||||||    
T  24074166 ttttcaataaaactaattaatgttatctatttg 24074134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 158
Target Start/End: Complemental strand, 27650882 - 27650854
Alignment:
Q  130 tcattttcaataaaactaattaatgttat 158  Q
    |||||||||||||||||||||||||||||    
T  27650882 tcattttcaataaaactaattaatgttat 27650854  T

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Target: scaffold1130 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold1130
Description:

Target: scaffold1130; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 418 - 451
Alignment:
Q  132 attttcaataaaactaattaatgttatgtatttg 165  Q
    ||||||||||||||||||||||||||| ||||||    
T  418 attttcaataaaactaattaatgttatatatttg 451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 14952 - 14989
Alignment:
Q  133 ttttcaataaaactaattaatgttatgtatttgtaaaa 170  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  14952 ttttcaataaaactaattaatgttatatatttggaaaa 14989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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