View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2837_low_7 (Length: 574)
Name: NF2837_low_7
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 125 - 562
Target Start/End: Complemental strand, 34690978 - 34690541
Alignment:
| Q |
125 |
catctatcttcgcagatggatgccattacacccaaatactccaaggataggtatgaactaattgtgaagggaatttcacccgctttgatgaggattggtt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34690978 |
catctatcttcgcagatggatgccattacacccaaatactccaaggataggtatgaactaattgtgaagggaatttcacccgctttgatgaggattggtt |
34690879 |
T |
|
| Q |
225 |
ataacacagataaaattccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctaccct |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34690878 |
ataacacagataaaattccatttgttcccatctctggttataagggagataacatcattgagcgctcgactaaccttgactggtacgaaggtcctaccct |
34690779 |
T |
|
| Q |
325 |
tcttgaagctcttgaccaaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaact |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34690778 |
tcttgaagctcttgaccaaatcgacgagcctaagaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaact |
34690679 |
T |
|
| Q |
425 |
gtacctgtcggacgtgttgagactggtgtgttgaaacctggaatggtgctgacttttgccccaactgggctgcaatctggagttaagtctgtgcagatgc |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34690678 |
gtacctgtcggacgtgttgagactggtgtgttgaaacctggaatggtgctgacttttgccccaactgggctgcaatctggagttaagtctgtgcagatgc |
34690579 |
T |
|
| Q |
525 |
atcatgaaaacatcagtgaggcccttcctggtgatatt |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34690578 |
atcatgaaaacatcagtgaggcccttcctggtgatatt |
34690541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 125 - 562
Target Start/End: Complemental strand, 34713390 - 34712953
Alignment:
| Q |
125 |
catctatcttcgcagatggatgccattacacccaaatactccaaggataggtatgaactaattgtgaagggaatttcacccgctttgatgaggattggtt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34713390 |
catctatcttcgcagatggatgccattacacccaaatactccaaggataggtatgaactaattgtgaagggaatttcacccgctttgatgaggattggtt |
34713291 |
T |
|
| Q |
225 |
ataacacagataaaattccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctaccct |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34713290 |
ataacacagataaaattccatttgttcccatctctggttataagggagataacatcattgagcgctcgactaaccttgactggtacgaaggtcctaccct |
34713191 |
T |
|
| Q |
325 |
tcttgaagctcttgaccaaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaact |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34713190 |
tcttgaagctcttgaccaaatcgacgagcctaagaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaact |
34713091 |
T |
|
| Q |
425 |
gtacctgtcggacgtgttgagactggtgtgttgaaacctggaatggtgctgacttttgccccaactgggctgcaatctggagttaagtctgtgcagatgc |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34713090 |
gtacctgtcggacgtgttgagactggtgtgttgaaacctggaatggtgctgacttttgccccaactgggctgcaatctggagttaagtctgtgcagatgc |
34712991 |
T |
|
| Q |
525 |
atcatgaaaacatcagtgaggcccttcctggtgatatt |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34712990 |
atcatgaaaacatcagtgaggcccttcctggtgatatt |
34712953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 125 - 562
Target Start/End: Complemental strand, 16232319 - 16231882
Alignment:
| Q |
125 |
catctatcttcgcagatggatgccattacacccaaatactccaaggataggtatgaactaattgtgaagggaatttcacccgctttgatgaggattggtt |
224 |
Q |
| |
|
||||||||||| |||||| |||||| |||||| |||||||||||||| || |||||| |||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
16232319 |
catctatcttcacagatgaatgccactacaccgaaatactccaaggacagatatgaagtaattgtgaagggagtttcacccgctttgacgaggattggtt |
16232220 |
T |
|
| Q |
225 |
ataacacagataaaattccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctaccct |
324 |
Q |
| |
|
||||| | ||| | ||||||||||||||||||||||||| |||| ||||||||| | |||||||||| ||||| ||||||||||| || || |||||||| |
|
|
| T |
16232219 |
ataacgctgatgatattccatttgttcccatctctggttttaagtgagataacatcgttgagcgctctactaaccttgactggtatgatgggcctaccct |
16232120 |
T |
|
| Q |
325 |
tcttgaagctcttgaccaaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaact |
424 |
Q |
| |
|
| |||||||| ||||||||||| ||||||||| ||||| |||||||||| || |||| || ||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
16232119 |
tgttgaagctattgaccaaatcagcgagcctaagaggcccgaaggcaagcctctgcgacttccccttcagcatgtctacaagattggaggtattggaact |
16232020 |
T |
|
| Q |
425 |
gtacctgtcggacgtgttgagactggtgtgttgaaacctggaatggtgctgacttttgccccaactgggctgcaatctggagttaagtctgtgcagatgc |
524 |
Q |
| |
|
|||||||| ||||||||||||||||| || || || || |||||||| |||||||||||||| ||| ||| |||||||| || |||||| | |||| | |
|
|
| T |
16232019 |
gtacctgtgggacgtgttgagactggggtattaaagcccggaatggtactgacttttgcccctactaagctacaatctggggtcaagtctattcagaagt |
16231920 |
T |
|
| Q |
525 |
atcatgaaaacatcagtgaggcccttcctggtgatatt |
562 |
Q |
| |
|
||| |||||||| | |||||||||||||| ||||||| |
|
|
| T |
16231919 |
ttcaggaaaacattaatgaggcccttcctgctgatatt |
16231882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 34691104 - 34691041
Alignment:
| Q |
1 |
tgggaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaagg |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34691104 |
tgggaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaagg |
34691041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 34713516 - 34713453
Alignment:
| Q |
1 |
tgggaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaagg |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34713516 |
tgggaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaagg |
34713453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 219 - 341
Target Start/End: Complemental strand, 33860879 - 33860757
Alignment:
| Q |
219 |
ttggttataacacagataaaattccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcc |
318 |
Q |
| |
|
|||| |||||| ||| ||| |||||||||||||||||||||||| | ||||||||||| ||||||||||| ||||| |||||||||||| | ||||| |
|
|
| T |
33860879 |
ttggctataacctagacaaagttccatttgttcccatctctggttttgagggagataacttgattgagcgctctactaatcttgactggtacaagggtcc |
33860780 |
T |
|
| Q |
319 |
tacccttcttgaagctcttgacc |
341 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
33860779 |
cacccttcttgaagctcttgacc |
33860757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 16232447 - 16232384
Alignment:
| Q |
1 |
tgggaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaagg |
64 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16232447 |
tgggaacatgctctacttgcgtacactcttggtgtgaggcaaatgatctgctgctgcaacaagg |
16232384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 384 - 523
Target Start/End: Complemental strand, 33860708 - 33860568
Alignment:
| Q |
384 |
taccacttcaacatgtctacaa-gattggaggtgttggaactgtacctgtcggacgtgttgagactggtgtgttgaaacctggaatggtgctgacttttg |
482 |
Q |
| |
|
|||||||||| ||||||||| ||||||||| | |||| ||| | ||| |||||||||| ||||||| |||||||||||||||| | ||||||||| |
|
|
| T |
33860708 |
taccacttcatggtgtctacaaagattggaggaatcggaaatgtgcatgtaggacgtgttgtgactggtcacttgaaacctggaatggcggtgacttttg |
33860609 |
T |
|
| Q |
483 |
ccccaactgggctgcaatctggagttaagtctgtgcagatg |
523 |
Q |
| |
|
||||||||||||||||| || ||| |||||||||||||| |
|
|
| T |
33860608 |
ccccaactgggctgcaagatgtagtcgagtctgtgcagatg |
33860568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 33861110 - 33861050
Alignment:
| Q |
4 |
gaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaagg |
64 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
33861110 |
gaacatgcccttctcgcctgcactcttggtgtgcctcaaatgatctgctgcatcaacaagg |
33861050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 20)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 137 - 558
Target Start/End: Original strand, 38138020 - 38138441
Alignment:
| Q |
137 |
cagatggatgccattacacccaaatactccaaggataggtatgaactaattgtgaagggaatttcacccgctttgat-gaggattggttataacacagat |
235 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| | |||||||| |||||| || | |||| |||||| |||| |
|
|
| T |
38138020 |
cagatggatgccactacacccaaatactccaaggataggtatgaagaaattgtgaaggaattttcaccctttttgattgatg-ttggctataacctagat |
38138118 |
T |
|
| Q |
236 |
aaaattccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctc |
335 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||| |||||| ||||| ||||| ||||||||||| | ||||| |||||||||||||||| |
|
|
| T |
38138119 |
gaaattccatttgttcccatctctggttttgagggagataacatcattgaacgctctactaaccttgactggtataagggtcccacccttcttgaagctc |
38138218 |
T |
|
| Q |
336 |
ttgaccaaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcgg |
435 |
Q |
| |
|
||||||||||| | |||||||| |||| | || ||||||| | || |||||||||| ||||||||||||||||||| |||||||||| ||||| || |
|
|
| T |
38138219 |
ttgaccaaatcaaggagcctaagaggctattagacaagcctctccgattaccacttcaggatgtctacaagattggaggaattggaactgtgcctgtggg |
38138318 |
T |
|
| Q |
436 |
acgtgttgagactggtgtgttgaaacctggaatggtgctgacttttgccccaactgggctgcaatctggagttaagtctgtgcagatgcatcatgaaaac |
535 |
Q |
| |
|
||| ||||||| ||||| |||||||| ||||||| | ||||||||||||||||||||||| || || || || ||| || ||||||| |||||||| |
|
|
| T |
38138319 |
acgggttgagagcggtgtcttgaaaccaggaatggcggtgacttttgccccaactgggctgaaaactcttgtgaattctatggagatgcaccatgaaaag |
38138418 |
T |
|
| Q |
536 |
atcagtgaggcccttcctggtga |
558 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
38138419 |
ctcaatgaggcccttcctggtga |
38138441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 137 - 558
Target Start/End: Complemental strand, 43083964 - 43083543
Alignment:
| Q |
137 |
cagatggatgccattacacccaaatactccaaggataggtatgaactaattgtgaagggaatttcacccgctttgatgaggattggttataacacagata |
236 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||| ||| ||||| ||||||||||| | ||||| || ||||| || | |||| |||||| |||| | |
|
|
| T |
43083964 |
cagatggatgctactacacccaagtactccaagggtagatatgatgaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagaca |
43083865 |
T |
|
| Q |
237 |
aaattccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctct |
336 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||| || |||||||| || || |||||||||||| | ||||| ||||||||||| || || |
|
|
| T |
43083864 |
aaattccatttgttcccatctctggttttgagggagataacatgatcgagcgctctacaaaccttgactggtacaagggtccaacccttcttgaggcact |
43083765 |
T |
|
| Q |
337 |
tgaccaaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcgga |
436 |
Q |
| |
|
|||||||||| |||||||||| |||||||||| |||||| | |||||||||||||| ||||||||||||||||||| |||||||||| ||||| || |
|
|
| T |
43083764 |
tgaccaaatcaacgagcctaagaggccttcagacaagcccctccgactaccacttcaagatgtctacaagattggaggaattggaactgtgcctgtgggg |
43083665 |
T |
|
| Q |
437 |
cgtgttgagactggtgtgttgaaacctggaatggtgctgacttttgccccaactgggctgcaatctggagttaagtctgtgcagatgcatcatgaaaaca |
536 |
Q |
| |
|
||||| ||||||||||| | |||||||||||||| | ||||||||||| ||||| ||| | ||| ||| ||||||||| |||||||||||||| |
|
|
| T |
43083664 |
cgtgtcgagactggtgtcataaaacctggaatggttatcacttttgcccctactggactgacaactgaagtcaagtctgtggagatgcatcatgaagctc |
43083565 |
T |
|
| Q |
537 |
tcagtgaggcccttcctggtga |
558 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
43083564 |
tcacagaggcccttcctggtga |
43083543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 137 - 558
Target Start/End: Original strand, 43066871 - 43067292
Alignment:
| Q |
137 |
cagatggatgccattacacccaaatactccaaggataggtatgaactaattgtgaagggaatttcacccgctttgatgaggattggttataacacagata |
236 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||| ||| ||||| ||||||||||| | ||||| || ||||| || | |||| |||||| |||| | |
|
|
| T |
43066871 |
cagatggatgctactacacccaagtactccaagggtagatatgatgaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagaca |
43066970 |
T |
|
| Q |
237 |
aaattccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctct |
336 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||| || |||||||| || || |||||||||||| | ||||| ||||||||||| || || |
|
|
| T |
43066971 |
aaattccatttgttcccatctctggttttgagggagataacatgatcgagcgctctacaaaccttgactggtacaagggtccaacccttcttgaggccct |
43067070 |
T |
|
| Q |
337 |
tgaccaaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcgga |
436 |
Q |
| |
|
|||||||||| |||||||||| |||||||||| |||||| | |||||||||||||| ||||||||||||||||||| |||||||||| ||||| || |
|
|
| T |
43067071 |
tgaccaaatcaacgagcctaagaggccttcagacaagcccctccgactaccacttcaagatgtctacaagattggaggaattggaactgtgcctgtgggg |
43067170 |
T |
|
| Q |
437 |
cgtgttgagactggtgtgttgaaacctggaatggtgctgacttttgccccaactgggctgcaatctggagttaagtctgtgcagatgcatcatgaaaaca |
536 |
Q |
| |
|
||||| ||||||||||| | |||||||||||||| | ||||||||||| ||||| ||| | ||| ||| ||||| ||| |||||||||||||| |
|
|
| T |
43067171 |
cgtgtcgagactggtgtcataaaacctggaatggttgtcacttttgcccctactggactgacaactgaagtcaagtccgtggagatgcatcatgaagctc |
43067270 |
T |
|
| Q |
537 |
tcagtgaggcccttcctggtga |
558 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
43067271 |
tcacagaggcccttcctggtga |
43067292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 239 - 558
Target Start/End: Original strand, 45983958 - 45984277
Alignment:
| Q |
239 |
attccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttg |
338 |
Q |
| |
|
|||||| |||||||||||||||||| | ||||||||||| ||||||||||| ||||| ||||| |||||| | ||||| ||||||||||||||| ||| |
|
|
| T |
45983958 |
attccaattgttcccatctctggttttgagggagataacttgattgagcgctctactaatcttgattggtacaagggtccaacccttcttgaagctattg |
45984057 |
T |
|
| Q |
339 |
accaaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcggacg |
438 |
Q |
| |
|
|||||||| ||||||||| ||||| |||| ||||||| | ||| |||||||||| ||||||||||||||||||| | |||||||| ||||| ||||| |
|
|
| T |
45984058 |
accaaatcaacgagcctatgaggccatcagacaagcctctcagaataccacttcaggatgtctacaagattggaggaatcggaactgtgcctgtgggacg |
45984157 |
T |
|
| Q |
439 |
tgttgagactggtgtgttgaaacctggaatggtgctgacttttgccccaactgggctgcaatctggagttaagtctgtgcagatgcatcatgaaaacatc |
538 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| ||| ||| ||||||||| ||||||| |||||| ||| |
|
|
| T |
45984158 |
tgttgagactggttccttgaaccctggaatggtgctgacttttgccgcaactgggctgcaagctgaagtgaagtctgtggagatgcaccatgaagctatc |
45984257 |
T |
|
| Q |
539 |
agtgaggcccttcctggtga |
558 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
45984258 |
ggtgaggcccttcctggtga |
45984277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 137 - 558
Target Start/End: Complemental strand, 3300854 - 3300433
Alignment:
| Q |
137 |
cagatggatgccattacacccaaatactccaaggataggtatgaactaattgtgaagggaatttcacccgctttgatgaggattggttataacacagata |
236 |
Q |
| |
|
||||||||||||| |||||| || ||||| |||| |||||||||| ||||||||||| | ||||| || ||||| || | |||| |||||| |||| | |
|
|
| T |
3300854 |
cagatggatgccactacacctaagtactcgaagggtaggtatgaagaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagaca |
3300755 |
T |
|
| Q |
237 |
aaattccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctct |
336 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||| || |||||||| || || |||||||||||| | ||||||||||||||||| ||||| |
|
|
| T |
3300754 |
aaattccatttgttcccatctctggttttgagggagataacatgatcgagcgctctacaaatcttgactggtacaagggtcctacccttcttgaggctct |
3300655 |
T |
|
| Q |
337 |
tgaccaaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcgga |
436 |
Q |
| |
|
|||||||||| |||||||||| ||||| |||| |||||| | | ||||| ||||| ||||||||||||||||||| |||| ||||| ||||| || |
|
|
| T |
3300654 |
tgaccaaatcaacgagcctaagaggccatcagacaagcccctccgtctaccgcttcaggatgtctacaagattggaggaattgggactgtgcctgtgggg |
3300555 |
T |
|
| Q |
437 |
cgtgttgagactggtgtgttgaaacctggaatggtgctgacttttgccccaactgggctgcaatctggagttaagtctgtgcagatgcatcatgaaaaca |
536 |
Q |
| |
|
||||| ||||||||||| | |||||||||||||| | ||||||||||| ||||| ||| | ||| ||| ||||||||| |||||||||||||| |
|
|
| T |
3300554 |
cgtgtcgagactggtgtcataaaacctggaatggttgtcacttttgcccctactggactgacaactgaagtgaagtctgtggagatgcatcatgaagctc |
3300455 |
T |
|
| Q |
537 |
tcagtgaggcccttcctggtga |
558 |
Q |
| |
|
||| |||||| ||||||||||| |
|
|
| T |
3300454 |
tcactgaggctcttcctggtga |
3300433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 137 - 558
Target Start/End: Complemental strand, 43045120 - 43044699
Alignment:
| Q |
137 |
cagatggatgccattacacccaaatactccaaggataggtatgaactaattgtgaagggaatttcacccgctttgatgaggattggttataacacagata |
236 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||| ||| ||||| ||||||||||| | ||||| || ||||| || | |||| |||||| |||| | |
|
|
| T |
43045120 |
cagatggatgctactacacccaagtactccaagggtagatatgatgaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagaca |
43045021 |
T |
|
| Q |
237 |
aaattccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctct |
336 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||| || |||||||| || || |||||||||||| | ||||| ||||||||||| || || |
|
|
| T |
43045020 |
aaattccatttgttcccatctctggttttgagggagataacatgatcgagcgctctacaaaccttgactggtacaagggtccaacccttcttgaggccct |
43044921 |
T |
|
| Q |
337 |
tgaccaaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcgga |
436 |
Q |
| |
|
|||||||||| | |||||||| |||||||||| |||||| | ||||||||||||| ||||||||||||||||||| |||||||||| ||||| || |
|
|
| T |
43044920 |
tgaccaaatcaatgagcctaagaggccttcagacaagcccctccgactaccacttcaggatgtctacaagattggaggaattggaactgtgcctgtgggg |
43044821 |
T |
|
| Q |
437 |
cgtgttgagactggtgtgttgaaacctggaatggtgctgacttttgccccaactgggctgcaatctggagttaagtctgtgcagatgcatcatgaaaaca |
536 |
Q |
| |
|
||||| ||||||||||| | |||||||||||||| | ||||||||||| ||||| ||| | ||| ||| ||||| ||| |||||||||||||| |
|
|
| T |
43044820 |
cgtgtcgagactggtgtcataaaacctggaatggttgtcacttttgcccctactggactgacaactgaagtcaagtccgtggagatgcatcatgaagctc |
43044721 |
T |
|
| Q |
537 |
tcagtgaggcccttcctggtga |
558 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
43044720 |
tcacagaggcccttcctggtga |
43044699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 138 - 532
Target Start/End: Original strand, 7891113 - 7891507
Alignment:
| Q |
138 |
agatggatgccattacacccaaatactccaaggataggtatgaactaattgtgaagggaatttcacccgctttga-tgaggattggttataacacagata |
236 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| ||||| |||| |||||| || || |
|
|
| T |
7891113 |
agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagtgagg-ttggctataacctaggta |
7891211 |
T |
|
| Q |
237 |
aaattccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctct |
336 |
Q |
| |
|
||||||| ||| | || ||||||||||| |||||||||||| |||||||||||| |||| ||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
7891212 |
aaattccttttatccctatctctggttacgagggagataacatcattgagcgctcttctaaccttgattggtacacgggtcccacccttcttgaagctct |
7891311 |
T |
|
| Q |
337 |
tgaccaaatc-gacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcgg |
435 |
Q |
| |
|
||||||| || || | |||||| ||| | || |||| | || ||||||||||| ||||||||||||||||||| |||||| ||| ||||| || |
|
|
| T |
7891312 |
tgaccaattcagaag-gcctaagaggttaatattcaggcctctccgattaccacttcaagatgtctacaagattggaggaattggaattgtgcctgtggg |
7891410 |
T |
|
| Q |
436 |
acgtgttgagactggtgtgttgaaacctggaatggtgctgacttttgccccaactgggctgcaatctggagttaagtctgtgcagatgcatcatgaa |
532 |
Q |
| |
|
||| |||||| ||||| | ||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||| ||||||| |||||| |
|
|
| T |
7891411 |
acgcgttgagtctggtatcttgaaacctggaatggtgctgacttttgccccaactgggctccaaactgaagtgaagtctgtggagatgcaccatgaa |
7891507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 137 - 487
Target Start/End: Complemental strand, 50912502 - 50912149
Alignment:
| Q |
137 |
cagatggatgccattacacccaaatactccaaggataggtatgaactaattgtgaagggaatttcacccgctttgatgaggattgg---ttataacacag |
233 |
Q |
| |
|
||||||||||| | ||| |||||||||||||||| |||||||||| |||||| ||| |||||||| | | | |||| |||| | |||| || |
|
|
| T |
50912502 |
cagatggatgctactactcccaaatactccaagggtaggtatgaagaaattgttaagatcctttcaccctttctaaagagggttggctatgataatctag |
50912403 |
T |
|
| Q |
234 |
ataaaattccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagc |
333 |
Q |
| |
|
|| ||||||| ||| ||||||||||||||| | |||||||||||| |||||||||||| ||||| |||||||||||| ||||||| |||||| ||||||| |
|
|
| T |
50912402 |
atgaaattccgtttattcccatctctggttttgagggagataacatcattgagcgctctactaaccttgactggtacaaaggtcccacccttattgaagc |
50912303 |
T |
|
| Q |
334 |
tcttgaccaaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtc |
433 |
Q |
| |
|
|||||| |||||| | |||||||| || || ||| || |||| | || |||||||||| ||||||||||||||||| |||||| ||||||||| |
|
|
| T |
50912302 |
tcttgatcaaatcaaggagcctaatagaccatcacacatgcctctccgattaccacttcaggttgtctacaagattggagaaattggaattgtacctgtg |
50912203 |
T |
|
| Q |
434 |
ggacgtgttgagactggtgtgttgaaacctggaatggtgctgacttttgcccca |
487 |
Q |
| |
|
|||||| ||||||| ||||| ||||||| |||||||||| |||||||||||||| |
|
|
| T |
50912202 |
ggacgtattgagaccggtgtcttgaaacgtggaatggtggtgacttttgcccca |
50912149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 219 - 492
Target Start/End: Original strand, 43076808 - 43077073
Alignment:
| Q |
219 |
ttggttataacacagataaaattccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcc |
318 |
Q |
| |
|
|||| |||||| |||| || ||||||||||||||||||||||||| | |||||||||||| || |||||||| || || ||| |||||||| | ||||| |
|
|
| T |
43076808 |
ttggctataacccagaaaacattccatttgttcccatctctggttttgagggagataacatgatcgagcgctctacaaaccttaactggtacaagggtcc |
43076907 |
T |
|
| Q |
319 |
tacccttcttgaagctcttgaccaaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgtt |
418 |
Q |
| |
|
|||||||||| || |||||||||||| |||||||||| |||||||||| ||||| | |||||| ||||||||||| || |||| || |
|
|
| T |
43076908 |
aacccttcttggggcccttgaccaaatcaacgagcctaagaggccttcagacaagcacctccgactac--------aatgtctacaagtttagaggaatt |
43076999 |
T |
|
| Q |
419 |
ggaactgtacctgtcggacgtgttgagactggtgtgttgaaacctggaatggtgctgacttttgccccaactgg |
492 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
43077000 |
ggaactgtacctgtggcacgtgttgagactggtgtcttgaaacctggaatggtggtgacttttgcccctactgg |
43077073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 125 - 558
Target Start/End: Original strand, 40034841 - 40035274
Alignment:
| Q |
125 |
catctatcttcgcagatggatgccattacacccaaatactccaaggataggtatgaactaattgtgaagggaatttcacccgc--tttgatgaggattgg |
222 |
Q |
| |
|
|||||||||| ||||||||||| | ||||||||||||||| |||| ||||| |||| | |||||| | |||||| ||| | |||||| | | |||| |
|
|
| T |
40034841 |
catctatcttgacagatggatgcaactacacccaaatactctaagggtaggtttgaagaacttgtgacg--aatttctccccccttttgatcaaggttgg |
40034938 |
T |
|
| Q |
223 |
ttataacacagataaaattccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacc |
322 |
Q |
| |
|
|||||| | | | ||||||||| ||||||| ||||||| | ||||| |||| |||||||||||| ||||| ||||| |||||| ||||||| ||| |
|
|
| T |
40034939 |
ctataacctatctgacattccatttattcccatatctggttttgttggagaaaacatcattgagcgctctactaaccttgattggtacaaaggtcccacc |
40035038 |
T |
|
| Q |
323 |
cttcttgaagctcttgaccaaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaa |
422 |
Q |
| |
|
||| |||||||| | ||||||||| | | || || ||||| |||| |||||| | || ||||| | || ||| |||| ||||||||| ||||| |
|
|
| T |
40035039 |
ctttttgaagctatcgaccaaatcaaagtaccgaagaggccatcagataagcctctccgattaccaatccagtctgtttacatgattggaggaattggag |
40035138 |
T |
|
| Q |
423 |
ctgtacctgtcggacgtgttgagactggtgtgttgaaacctggaatggtgctgacttttgccccaactgggctgcaatctggagttaagtctgtgcagat |
522 |
Q |
| |
|
|| ||||| || |||||| ||||||||| |||||||| ||||||| |||||||||||||||||||| ||||| ||| ||| | ||||||| |||| |
|
|
| T |
40035139 |
tcgtgcctgttggtcgtgttatgactggtgtcttgaaaccaggaatggctgtgacttttgccccaactggggtgcaaactgaagtgaggtctgtggagat |
40035238 |
T |
|
| Q |
523 |
gcatcatgaaaacatcagtgaggcccttcctggtga |
558 |
Q |
| |
|
||| || ||| ||| ||||||||||||||||| |
|
|
| T |
40035239 |
gcaccacgaaggtctcatcgaggcccttcctggtga |
40035274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 45983717 - 45983777
Alignment:
| Q |
4 |
gaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaagg |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45983717 |
gaacatgctcttcttgccttcactcttggtgtgaatcaaatgatctgctgctgcaacaagg |
45983777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 45993503 - 45993563
Alignment:
| Q |
4 |
gaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaagg |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
45993503 |
gaacatgctcttcttgccttcactcttggtgtgaatcaaatgatctgttgctgcaacaagg |
45993563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 40034703 - 40034763
Alignment:
| Q |
4 |
gaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaagg |
64 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40034703 |
gaacatgctcttcttgcctatactcttggtgtgaatcaaatgatctgctgctgcaacaagg |
40034763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 43045268 - 43045208
Alignment:
| Q |
4 |
gaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaagg |
64 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
43045268 |
gaacatgctctccttgctttcactcttggtgtgaagcaaatgatctgctgttgcaacaagg |
43045208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 43045721 - 43045661
Alignment:
| Q |
4 |
gaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaagg |
64 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
43045721 |
gaacatgctctccttgctttcactcttggtgtgaagcaaatgatctgctgttgcaacaagg |
43045661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 43066686 - 43066746
Alignment:
| Q |
4 |
gaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaagg |
64 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
43066686 |
gaacatgctctccttgctttcactcttggtgtgaagcaaatgatctgctgttgcaacaagg |
43066746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 43084149 - 43084089
Alignment:
| Q |
4 |
gaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaagg |
64 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
43084149 |
gaacatgctctccttgctttcactcttggtgtgaagcaaatgatctgctgttgcaacaagg |
43084089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 38137871 - 38137931
Alignment:
| Q |
4 |
gaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaagg |
64 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
38137871 |
gaacatgctcttcttgcattcgttcttggtgtgcgccaaatgatctgctgctgcaacaagg |
38137931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 3301004 - 3300945
Alignment:
| Q |
4 |
gaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaagg |
64 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||| ||||||||| | ||||||||||||| |
|
|
| T |
3301004 |
gaacacgctcttcttgctttcactcttggtgtgaagcaaatgat-ttttgctgcaacaagg |
3300945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 7888848 - 7888902
Alignment:
| Q |
138 |
agatggatgccattacacccaaatactccaaggataggtatgaactaattgtgaa |
192 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||| ||||||||| ||||||||| |
|
|
| T |
7888848 |
agatggatgccactacacccatatactcctaggacaggtatgaagaaattgtgaa |
7888902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 3e-86; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 125 - 558
Target Start/End: Complemental strand, 4619821 - 4619388
Alignment:
| Q |
125 |
catctatcttcgcagatggatgccattacacccaaatactccaaggataggtatgaactaattgtgaagggaatttcacccgctttgatgaggattggtt |
224 |
Q |
| |
|
|||||||||| |||||||||||| | ||||||||||||||||| ||||||||||| | ||||||| || |||||| | |||| ||||||||| | |
|
|
| T |
4619821 |
catctatcttgatagatggatgccactgcacccaaatactccaagtataggtatgaagaatttgtgaaaggtttttcacactttttggagaggattggct |
4619722 |
T |
|
| Q |
225 |
ataacacagataaaattccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctaccct |
324 |
Q |
| |
|
||||| | | |||||| ||||||||||||||||||||| | ||||||||||| |||||||| || |||| |||||||||||||| ||||| ||||| |
|
|
| T |
4619721 |
ataaccctaaaaaaattacatttgttcccatctctggttttgagggagataacttgattgagcgttcttctaatcttgactggtacgagggtcccaccct |
4619622 |
T |
|
| Q |
325 |
tcttgaagctcttgaccaaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaact |
424 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||| ||| ||||||| | || ||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
4619621 |
tcttgaagctcttgaccaaatcaacgagcctaataggccatcaaacaagcctctccgattaccacttcgggatgtctacaagattggaggaattggaact |
4619522 |
T |
|
| Q |
425 |
gtacctgtcggacgtgttgagactggtgtgttgaaacctggaatggtgctgacttttgccccaactgggctgcaatctggagttaagtctgtgcagatgc |
524 |
Q |
| |
|
|| ||||| ||| |||||||||| ||||| ||||||||||||||| || ||||||||||||| | |||||||||| ||| ||| ||||||||||| ||| |
|
|
| T |
4619521 |
gtgcctgtgggatgtgttgagaccggtgtcttgaaacctggaatgatggtgacttttgccccgattgggctgcaagctgaagtaaagtctgtgcaaatgg |
4619422 |
T |
|
| Q |
525 |
atcatgaaaacatcagtgaggcccttcctggtga |
558 |
Q |
| |
|
| ||| ||| ||| |||||||||||||||||| |
|
|
| T |
4619421 |
accatacaaatctcactgaggcccttcctggtga |
4619388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 138 - 532
Target Start/End: Complemental strand, 1846608 - 1846214
Alignment:
| Q |
138 |
agatggatgccattacacccaaatactccaaggataggtatgaactaattgtgaagggaatttcacccgctttgat-gaggattggttataacacagata |
236 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| |||| |||| |||||| ||| || |
|
|
| T |
1846608 |
agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgagg-ttggctataacccaggta |
1846510 |
T |
|
| Q |
237 |
aaattccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctct |
336 |
Q |
| |
|
||||||| ||| | || ||||||||||| |||||||||||| |||||||| ||| |||| |||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
1846509 |
aaattccttttatccctatctctggttacgagggagataacatcattgagcactcttctaaccttgactggtacacgggtcccacccttcttgaagctct |
1846410 |
T |
|
| Q |
337 |
tgaccaaatc-gacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcgg |
435 |
Q |
| |
|
|||||||||| || | |||||| ||| | || |||| | || ||||||||||| ||||||||||||||||||| |||||| ||| ||||| || |
|
|
| T |
1846409 |
tgaccaaatcagaag-gcctaagaggttaatattcaggcctctccgattaccacttcaagatgtctacaagattggaggaattggaattgtgcctgtggg |
1846311 |
T |
|
| Q |
436 |
acgtgttgagactggtgtgttgaaacctggaatggtgctgacttttgccccaactgggctgcaatctggagttaagtctgtgcagatgcatcatgaa |
532 |
Q |
| |
|
||| |||||| ||||| | ||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||| ||||||| |||||| |
|
|
| T |
1846310 |
acgcgttgagtctggtatcttgaaacctggaatggtgctgacttttgccccaactgggctccaaactgaagtgaagtctgtggagatgcaccatgaa |
1846214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 4787471 - 4787531
Alignment:
| Q |
4 |
gaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaagg |
64 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4787471 |
gaacatgctcttcttgccttcactgttggtgtgaagcaaatgatctgctgctgcaacaagg |
4787531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 125 - 340
Target Start/End: Complemental strand, 4297614 - 4297399
Alignment:
| Q |
125 |
catctatcttcgcagatggatgccattacacccaaatactccaaggataggtatgaactaattgtgaagggaatttcacccgctttgatgaggattggtt |
224 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| | ||| || | ||| | || |||||| | | |||| | |
|
|
| T |
4297614 |
catctatcttcacagatggatgccactacacccaaatactccatggataggtatgtaaaaatatcagagcaagttttaacctatttgatcaaggttggct |
4297515 |
T |
|
| Q |
225 |
ataacacagataaaattccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctaccct |
324 |
Q |
| |
|
|||| || || ||||||||||| ||||||||||| ||| | | ||||||||| ||||| ||||| ||||| ||||||||||| | ||||| ||||| |
|
|
| T |
4297514 |
ataagccatatgaaattccatttattcccatctctagttttgacggagataacttgattgaccgctccactaattttgactggtacaagggtcccaccct |
4297415 |
T |
|
| Q |
325 |
tcttgaagctcttgac |
340 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
4297414 |
tcttgaagctattgac |
4297399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 4297750 - 4297690
Alignment:
| Q |
4 |
gaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaagg |
64 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||||| ||||||||||||||||||| |
|
|
| T |
4297750 |
gaacatgctcttcttgccttcaatcttggtgcgaatcaaattatctgctgctgcaacaagg |
4297690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 340
Target Start/End: Original strand, 4787652 - 4787773
Alignment:
| Q |
219 |
ttggttataacacagataaaattccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcc |
318 |
Q |
| |
|
|||| |||||| || || ||||||||||||||||||||||| ||| | | ||||||||| ||||| ||||| ||||| |||||||||| ||||| |
|
|
| T |
4787652 |
ttggctataacccaaatgaaattccatttgttcccatctctagttttgatggagataacttgattgaccgctccactaattttgactggtaaatgggtcc |
4787751 |
T |
|
| Q |
319 |
tacccttcttgaagctcttgac |
340 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
4787752 |
gacccttcttgaagctattgac |
4787773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 4619958 - 4619898
Alignment:
| Q |
4 |
gaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaagg |
64 |
Q |
| |
|
||||||||| | ||||| || || |||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
4619958 |
gaacatgctgtccttgctttaacccttggtgtgaagcaaatgatctgctgctacaacaagg |
4619898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 523
Target Start/End: Complemental strand, 4297265 - 4297216
Alignment:
| Q |
474 |
tgacttttgccccaactgggctgcaatctggagttaagtctgtgcagatg |
523 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||| || |||||| ||||| |
|
|
| T |
4297265 |
tgacttttgccccaactgggctgcaagctgaagtcaaatctgtggagatg |
4297216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 1e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 219 - 532
Target Start/End: Complemental strand, 4231503 - 4231190
Alignment:
| Q |
219 |
ttggttataacacagataaaattccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcc |
318 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||| || || |||||||||||| | ||||| |
|
|
| T |
4231503 |
ttggctataacccagataaaattccatttgttcccatctctggttttgagggagataacatgattgagcgctctacaaatcttgactggtacaagggtcc |
4231404 |
T |
|
| Q |
319 |
tacccttcttgaagctcttgaccaaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgtt |
418 |
Q |
| |
|
|| |||||||| |||||||| |||||| | |||||||| ||||| |||| |||||| | ||||||| ||||| ||||||||||||||||||| || |
|
|
| T |
4231403 |
aacacttcttgaggctcttgatcaaatcaatgagcctaagaggccatcagacaagcccctccgactacctcttcaggatgtctacaagattggaggaatt |
4231304 |
T |
|
| Q |
419 |
ggaactgtacctgtcggacgtgttgagactggtgtgttgaaacctggaatggtgctgacttttgccccaactgggctgcaatctggagttaagtctgtgc |
518 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| ||||||||||||||||| |||||||||| |||||||| |||||| ||| ||| ||||||||| |
|
|
| T |
4231303 |
ggaactgttcctgtgggacgtgttgagactggtaccatgaaacctggaatggtggtgacttttgctccaactggactgcaaactgaagtcaagtctgtgg |
4231204 |
T |
|
| Q |
519 |
agatgcatcatgaa |
532 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4231203 |
agatgcatcatgaa |
4231190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 4231741 - 4231681
Alignment:
| Q |
4 |
gaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaagg |
64 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4231741 |
gaacatgctctccttgctttcactcttggtgtgaggcaaatgatctgctgctgcaacaagg |
4231681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 499
Target Start/End: Original strand, 19964974 - 19965074
Alignment:
| Q |
399 |
tctacaagattggaggtgttggaactgtacctgtcggacgtgttgagactggtgtgttgaaacctggaatggtgctgacttttgccccaactgggctgca |
498 |
Q |
| |
|
|||||||| ||||||| | |||| ||| ||||| |||||| ||| ||||||| |||| |||||| |||||| ||| ||||||||||||||||||||| |
|
|
| T |
19964974 |
tctacaaggttggaggaatcggaaatgtgcctgtgggacgtattgtgactggttacttgacacctgggatggtgatgaattttgccccaactgggctgca |
19965073 |
T |
|
| Q |
499 |
a |
499 |
Q |
| |
|
| |
|
|
| T |
19965074 |
a |
19965074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 243 - 488
Target Start/End: Complemental strand, 16349161 - 16348916
Alignment:
| Q |
243 |
catttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcctacccttcttgaagctcttgacca |
342 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| |||||| ||| || |||||||| ||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
16349161 |
catttgttcccatctctggttttgagggagataacttggttgagccctctacaaaacttgatgggtacaagggtcccacccttcttgaagctcttgaccg |
16349062 |
T |
|
| Q |
343 |
aatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgttggaactgtacctgtcggacgtgtt |
442 |
Q |
| |
|
|||| |||||||||| |||| |||| ||||||| | || |||||||||| |||||||||||||||||| ||||| || | ||| ||| |||| |
|
|
| T |
16349061 |
aatcaacgagcctaagaggctatcagacaagcctctccgattaccacttcagggtgtctacaagattggaggaattggagctttggctgcaggatgtgtc |
16348962 |
T |
|
| Q |
443 |
gagactggtgtgttgaaacctggaatggtgctgacttttgccccaa |
488 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||| |||||| |
|
|
| T |
16348961 |
aggactggtgtcttgaaacctggaatggtggtgactttttccccaa |
16348916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 16349413 - 16349353
Alignment:
| Q |
4 |
gaacatgctcttcttgccttcactcttggtgtgaggcaaatgatctgctgctgcaacaagg |
64 |
Q |
| |
|
||||||||||| | ||| | | |||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
16349413 |
gaacatgctctccatgcttactctcttggtgtcaagcaaatgatctgctgctgcaacaagg |
16349353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 219 - 356
Target Start/End: Original strand, 39242511 - 39242650
Alignment:
| Q |
219 |
ttggttataacacagataaaattccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcc |
318 |
Q |
| |
|
|||| |||||| |||| |||| || |||||||||||||||||||| ||| ||||||||| ||||||||||| ||||| ||||||||||| | |||| |
|
|
| T |
39242511 |
ttggctataacccagacaaaactcgatttgttcccatctctggttttaacggagataacttgattgagcgctctactaatattgactggtacaacagtcc |
39242610 |
T |
|
| Q |
319 |
tacccttcttgaa--gctcttgaccaaatcgacgagccta |
356 |
Q |
| |
|
|||||||||||| |||||||||| | || ||||||||| |
|
|
| T |
39242611 |
cacccttcttgaagcgctcttgaccgattcaacgagccta |
39242650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 447
Target Start/End: Original strand, 7519964 - 7520192
Alignment:
| Q |
219 |
ttggttataacacagataaaattccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcc |
318 |
Q |
| |
|
||||||| ||| |||| ||||| ||||||||||| |||||||||| | | || || |||| |||||| | || || || |||||||||||| | || || |
|
|
| T |
7519964 |
ttggttacaacccagacaaaatcccatttgttccaatctctggttttgaaggtgacaacatgattgagaggtctaccaaccttgactggtacaagggacc |
7520063 |
T |
|
| Q |
319 |
tacccttcttgaagctcttgaccaaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgtt |
418 |
Q |
| |
|
|| || ||||| ||||||||||| ||| ||||||| || || || ||| |||||| | || || ||| | ||| |||| ||||||||||| ||| || |
|
|
| T |
7520064 |
aactctccttgaggctcttgaccagatcaacgagcccaagagacccacagacaagcccctcaggcttccattgcaagatgtttacaagattggtggtatt |
7520163 |
T |
|
| Q |
419 |
ggaactgtacctgtcggacgtgttgagac |
447 |
Q |
| |
|
|||||||| || || |||||||||||||| |
|
|
| T |
7520164 |
ggaactgtgccagttggacgtgttgagac |
7520192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 219 - 447
Target Start/End: Original strand, 7529501 - 7529729
Alignment:
| Q |
219 |
ttggttataacacagataaaattccatttgttcccatctctggttataagggagataacaccattgagcgctcgactaaacttgactggtacgaaggtcc |
318 |
Q |
| |
|
||||||| ||| | || ||||| ||||||||||||||||| || | | | || || |||| |||||| | || || || |||||||||||| | || || |
|
|
| T |
7529501 |
ttggttacaaccctgacaaaatcccatttgttcccatctccggatttgaaggtgacaacatgattgagaggtccaccaaccttgactggtacaagggacc |
7529600 |
T |
|
| Q |
319 |
tacccttcttgaagctcttgaccaaatcgacgagcctaacaggccttcaggcaagcctttgagactaccacttcaacatgtctacaagattggaggtgtt |
418 |
Q |
| |
|
|| || ||||| ||||||||||| ||| ||||||| || || || ||| |||||| | || || ||| | ||| |||| ||||||||||| ||| || |
|
|
| T |
7529601 |
aactctccttgaggctcttgaccagatcaacgagcccaagagacccacagacaagcccctcaggcttccattgcaagatgtttacaagattggtggtatt |
7529700 |
T |
|
| Q |
419 |
ggaactgtacctgtcggacgtgttgagac |
447 |
Q |
| |
|
|||||||| || ||||||||||||||||| |
|
|
| T |
7529701 |
ggaactgtgccagtcggacgtgttgagac |
7529729 |
T |
|
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