View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2837_low_9 (Length: 481)
Name: NF2837_low_9
Description: NF2837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2837_low_9 |
 | |
|
| [»] scaffold0083 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 36)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 10432303 - 10431948
Alignment:
| Q |
18 |
agatgttggagacaattggcacagagttctattttgtccagattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10432303 |
agatgttggagacaattggcacagagttctattttgtccagattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaatt |
10432204 |
T |
|
| Q |
118 |
cgacaacatgccaaattggaatgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgttctgaacta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10432203 |
cgacaacatgccaaattggaatgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgtcctgaacta |
10432104 |
T |
|
| Q |
218 |
aggggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactattggaaacagagccaaacactatgcattggttgt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10432103 |
aggggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactactggaaacagagccaaacactatgcattggttgt |
10432004 |
T |
|
| Q |
318 |
cgtcaataaagaaaattaatatcaatgggcttgatggaaggacccaattgtcattg |
373 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||| | ||||||||| |
|
|
| T |
10432003 |
cgtcaataaagaaagttaatatcaatgggcttgacggaaggaccaatttgtcattg |
10431948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 373
Target Start/End: Original strand, 10197485 - 10197838
Alignment:
| Q |
20 |
atgttggagacaattggcacagagttctattttgtccagattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaattcg |
119 |
Q |
| |
|
||||||||||||||||| | |||||||||| ||||||| || ||||| || ||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
10197485 |
atgttggagacaattggtccggagttctattatgtccagggagaagaaggttcttgttcttccttccagccatttccaacccttgagcgtataaaattcg |
10197584 |
T |
|
| Q |
120 |
acaacatgccaaattggaatgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgttctgaactaag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
10197585 |
acaacatgccaaattggaatgaatggcttccctatgaaggcataaaatttgcttttcctcgacttagagctatggagttacgtaattgtcgagaactaag |
10197684 |
T |
|
| Q |
220 |
gggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactattggaaacagagccaaacactatgcattggttgtcg |
319 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||| ||| |||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10197685 |
gggacatttgcctagcaaccttccttgcataaaagaaattgtaataaaaggttgttctcatctattggaaacagagccaaacactttgcattggttgtcg |
10197784 |
T |
|
| Q |
320 |
tcaataaagaaaattaatatcaatgggcttgatggaaggacccaattgtcattg |
373 |
Q |
| |
|
||| ||||||||||||||||| ||||| ||| || ||||||||||||||||||| |
|
|
| T |
10197785 |
tcagtaaagaaaattaatatcgatgggtttggtgaaaggacccaattgtcattg |
10197838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 22 - 373
Target Start/End: Original strand, 10262512 - 10262863
Alignment:
| Q |
22 |
gttggagacaattggcacagagttctattttgtccagattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaattcgac |
121 |
Q |
| |
|
||||||||||||||| | |||||||||| |||||| || ||||| || ||||||||||| |||||||| |||||||||||||||||||||| || |
|
|
| T |
10262512 |
gttggagacaattggtccggagttctattatgtccaaggagaagaaggttcttgttcttccttccaaccatttcaatcccttgagcgtataaaattcaac |
10262611 |
T |
|
| Q |
122 |
aacatgccaaattggaatgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgttctgaactaaggg |
221 |
Q |
| |
|
| | |||||||||||||||||||||| |||| ||||||||||||| || |||||||||||||||||| ||||||||||||||||||| | |||||||||| |
|
|
| T |
10262612 |
agcttgccaaattggaatgaatggcttccctatgaaggcataaaactttcttttcctcgacttagagctatggagttacataattgtccagaactaaggg |
10262711 |
T |
|
| Q |
222 |
gacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactattggaaacagagccaaacactatgcattggttgtcgtc |
321 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10262712 |
aacatttgcctagcaaacttccttgcatagaagaaattgtaataaaaggttgttctcatctattggaaacagagccaaacactttgcattggttgtcgtc |
10262811 |
T |
|
| Q |
322 |
aataaagaaaattaatatcaatgggcttgatggaaggacccaattgtcattg |
373 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10262812 |
agtaaagaaaattaatatcgatgggcttgatggaaggacccaattgtcattg |
10262863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 372
Target Start/End: Complemental strand, 10362058 - 10361709
Alignment:
| Q |
20 |
atgttggagacaattggcacagagttctattttgtccagattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaattcg |
119 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||| || || || ||||||||||||| ||||||||||||||||||||| ||||| |||| |
|
|
| T |
10362058 |
atgttggagacaattggcctggagttctattatgtccagattgaagatggttctaattcttccttccaaccatttccatcccttgagcgcataaatttcg |
10361959 |
T |
|
| Q |
120 |
acaacatgccaaattggaatgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgttctgaactaag |
219 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
10361958 |
acaacatgccaaattggaatgaatggattccctttgaaggcataaaatgtgcttttcctcaacttagagctatggagttacataattgtccagaactaag |
10361859 |
T |
|
| Q |
220 |
gggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactattggaaacagagccaaacactatgcattggttgtcg |
319 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
10361858 |
gggacatttgccgagcaaccttccttgcatagaagaaattgtaatacaaggttgttctcatctattggaaacagagcc---cactttgcattggttgtcg |
10361762 |
T |
|
| Q |
320 |
tcaataaagaaaattaatatcaatgggcttgatggaaggacccaattgtcatt |
372 |
Q |
| |
|
|||||||| || |||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
10361761 |
tcaataaaaaattttaagattgatgggcttgatggaaggacccaattgtcatt |
10361709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 373
Target Start/End: Original strand, 10090602 - 10090956
Alignment:
| Q |
20 |
atgttggagacaattggcacagagttctattttgtccagattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaattcg |
119 |
Q |
| |
|
||||||||||||||||| | |||||||||| ||||||| || ||||| || ||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
10090602 |
atgttggagacaattggtccggagttctattatgtccagggagaagaaggttcttgttcttccttccagccatttccaacccttgagcgtataaaattcg |
10090701 |
T |
|
| Q |
120 |
acaacatgccaaattggaatgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagtt-acataattgttctgaactaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| |||||||| || ||||||| ||||||| |
|
|
| T |
10090702 |
acaacatgccaaattggaatgaatggcttccctatgaaggcataaaatttgcttttcctcgacttagagctatggagtacacgtaattgtcgagaactaa |
10090801 |
T |
|
| Q |
219 |
ggggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactattggaaacagagccaaacactatgcattggttgtc |
318 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||| ||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10090802 |
ggggacatttgcctagcaaccttccttgcataaaagaaattgtaataaaaggttgttctcatctattggaaacagagccaaacactttgcattggttgtc |
10090901 |
T |
|
| Q |
319 |
gtcaataaagaaaattaatatcaatgggcttgatggaaggacccaattgtcattg |
373 |
Q |
| |
|
|||| ||||||||||||||||| ||||| ||| || ||||||||||||||||||| |
|
|
| T |
10090902 |
gtcagtaaagaaaattaatatcgatgggtttggtgaaaggacccaattgtcattg |
10090956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 10374104 - 10373774
Alignment:
| Q |
18 |
agatgttggagacaattggcacagagttctattttgtccagattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaatt |
117 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| || | ||||||| ||||| || ||||||||||||| |||||| |||||||||||||||||||| || |
|
|
| T |
10374104 |
agatgttggagacaattggcccggagttctattatgccaagattgaagaaggatctaattcttccttccaaccattcccatcccttgagcgtataaagtt |
10374005 |
T |
|
| Q |
118 |
cgacaacatgccaaattggaatgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgttctgaacta |
217 |
Q |
| |
|
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||||||||| | ||| ||||||| ||||||| | |||||| |
|
|
| T |
10374004 |
cgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttaaggctatagagttacgtaattgtccagaacta |
10373905 |
T |
|
| Q |
218 |
aggggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactattggaaacagagccaaacactatgcattggttgt |
317 |
Q |
| |
|
|||||||| ||||| | ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| ||| ||| |||||||||||| |
|
|
| T |
10373904 |
aggggacatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaaca---ccatctactctgcattggttgt |
10373808 |
T |
|
| Q |
318 |
cgtcaataaagaaaattaatatcaatgggcttga |
351 |
Q |
| |
|
| |||||||| |||| ||||||||||||||||| |
|
|
| T |
10373807 |
cttcaataaaagaaatgaatatcaatgggcttga |
10373774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 10582420 - 10582773
Alignment:
| Q |
18 |
agatgttggagacaattggcacagagttctattttgtccagattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaatt |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||| ||||| || ||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
10582420 |
agatgttggagacaattggcctggagttctattatgtccagattgaagaaggttctaattcttccttccaaccatttccatcccttgagtatataaaatt |
10582519 |
T |
|
| Q |
118 |
cgacaacatgccaaattggaatgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgttctgaacta |
217 |
Q |
| |
|
|||||| || |||||||||||| ||||||| ||||||||||||||| || |||||||||||| |||| ||| |||| |||||| ||||||| | ||||| |
|
|
| T |
10582520 |
cgacaatataccaaattggaataaatggcttccctttgaaggcatacaatttgcttttcctcaacttcgagctatgaagttacgtaattgtcccaaacta |
10582619 |
T |
|
| Q |
218 |
aggggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactattggaaacagagccaaacactatgcattggttgt |
317 |
Q |
| |
|
| |||||| ||||||||| | ||||||||||||||||||||||| ||| ||||||| ||| ||||||||||||||||| |||| |||||||||||| |
|
|
| T |
10582620 |
aagggacatttgcctagccatcttccttgcatagaagaaattgaaatagaaggttgtgttcatctattggaaacagagcc---cactttgcattggttgt |
10582716 |
T |
|
| Q |
318 |
cgtcaat-aaagaaaattaatatcaatgggcttgatggaaggacccaattgtcattg |
373 |
Q |
| |
|
||||||| ||| |||||||| || ||||||||| || |||||||||||||| |||| |
|
|
| T |
10582717 |
cgtcaataaaaaaaaattaagattgatgggcttggtgaaaggacccaattgttattg |
10582773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 9840671 - 9841020
Alignment:
| Q |
18 |
agatgttggagacaattggcacagagttctattttgtccagattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaatt |
117 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| || ||||||||| ||||| || ||||||||||||| |||||| |||||||||||||||||||| || |
|
|
| T |
9840671 |
agatgttggagacaattggcccggagttctattatgcccagattgaagaaggatctaattcttccttccaaccattcccatcccttgagcgtataaagtt |
9840770 |
T |
|
| Q |
118 |
cgacaacatgccaaattggaatgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgttctgaacta |
217 |
Q |
| |
|
||||||||||| ||||||||||||||| | ||||||||||||||||| ||||||||||| ||||| | ||| ||||||| |||||| | |||||| |
|
|
| T |
9840771 |
cgacaacatgctcaattggaatgaatggattccctttgaaggcataaa---tgcttttcctcaacttaaggctatagagttacgcaattgtccagaacta |
9840867 |
T |
|
| Q |
218 |
aggggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactattggaaacagagccaaacactatgcattggttgt |
317 |
Q |
| |
|
|||||| | ||||| | ||||||||||| ||||||| |||||| ||||||||||||||||| |||||||||||| ||| ||| |||||||||||| |
|
|
| T |
9840868 |
aggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaaca---ccatctactctgcattggttgt |
9840964 |
T |
|
| Q |
318 |
cgtcaataaagaaaattaatatcaatgggcttgatggaaggacccaattgtcattg |
373 |
Q |
| |
|
| |||||||| ||||| |||||||||||||||| || ||| |||||||||||||| |
|
|
| T |
9840965 |
cttcaataaaaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattg |
9841020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 10033810 - 10034140
Alignment:
| Q |
18 |
agatgttggagacaattggcacagagttctattttgtccagattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaatt |
117 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| || ||||||||| |||| || ||||||||||||| |||||| | |||||||||||||||||| || |
|
|
| T |
10033810 |
agatgttggagacaattggcccggagttctattatgcccagattgaaaaaggatctaattcttccttccaaccattccgatcccttgagcgtataaagtt |
10033909 |
T |
|
| Q |
118 |
cgacaacatgccaaattggaatgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgttctgaacta |
217 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||||||| | ||| |||||| |||||||| | |||||| |
|
|
| T |
10033910 |
cgacaacatggtcaattggaatgaatggattccctttgaaggcataaaatgtgcttttcctcgacttaaggctatagagttatataattgtccagaacta |
10034009 |
T |
|
| Q |
218 |
aggggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactattggaaacagagccaaacactatgcattggttgt |
317 |
Q |
| |
|
|||||||| ||||| | ||||||||||| ||||||| |||||| ||||||||||||||||| |||||||||||| ||| ||| |||||||||||| |
|
|
| T |
10034010 |
aggggacatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaaca---ccatctactctgcattggttgt |
10034106 |
T |
|
| Q |
318 |
cgtcaataaagaaaattaatatcaatgggcttga |
351 |
Q |
| |
|
| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
10034107 |
cttcaataaaaaaaatgaatatcaatgggcttga |
10034140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 10665336 - 10665658
Alignment:
| Q |
18 |
agatgttggagacaattggcacagagttctattttgtccagattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaatt |
117 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| |||||||||||| |||||||| | ||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
10665336 |
agatgttggagacaattggcccggagttctattatgtccagattgaggaaggctcaagttcttccttccaaccatttccatcccttgagtgtataaaatt |
10665435 |
T |
|
| Q |
118 |
cgacaacatgccaaattggaatgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgttctgaacta |
217 |
Q |
| |
|
||||||||| |||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||| | ||||| |
|
|
| T |
10665436 |
cgacaacataccaaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcgacttagagccatggagttacgtaattgtccaaaacta |
10665535 |
T |
|
| Q |
218 |
aggggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactattggaaacagagccaaacactatgcattggttgt |
317 |
Q |
| |
|
| |||||| ||||||||| | |||||||| |||||||||||||| || |||| || ||||| ||||||| || |||| |||||||||||| |
|
|
| T |
10665536 |
aagggacatttgcctagccatcttccttgtatagaagaaattgaaattgaaggtcgt------ctattagaaacaggtcc---cactttgcattggttgt |
10665626 |
T |
|
| Q |
318 |
cgtcaataaagaaaattaatatcaatgggctt |
349 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||| |
|
|
| T |
10665627 |
cgtcaataaaaaaagttaaaatcaatgggctt |
10665658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 9851549 - 9851901
Alignment:
| Q |
18 |
agatgttggagacaattggcacagagttctattttgtccagattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaatt |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || ||||||||| ||||| || ||||||||||||| |||||| |||||||||||||||||||| || |
|
|
| T |
9851549 |
agatgttggagacaattggcctggagttctattatgcccagattgaagaaggatctaattcttccttccaaccattcccatcccttgagcgtataaagtt |
9851648 |
T |
|
| Q |
118 |
cgacaacatgccaaattggaatgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgttctgaacta |
217 |
Q |
| |
|
||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||| ||||| | || ||||||| | ||||| | ||||| |
|
|
| T |
9851649 |
cgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccaaaacta |
9851748 |
T |
|
| Q |
218 |
aggggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactattggaaacagagccaaacactatgcattggttgt |
317 |
Q |
| |
|
|||||| | ||||| | ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| ||| ||| ||| |||||||| |
|
|
| T |
9851749 |
aggggatatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaaca---ccatctactctgcgttggttgt |
9851845 |
T |
|
| Q |
318 |
cgtcaataaagaaaattaatatcaatgggcttgatggaaggacccaattgtcattg |
373 |
Q |
| |
|
| |||||||| ||||| |||||||||||||||| || ||| |||||||||||||| |
|
|
| T |
9851846 |
cttcaataaaaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattg |
9851901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 10128735 - 10129087
Alignment:
| Q |
18 |
agatgttggagacaattggcacagagttctattttgtccagattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaatt |
117 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| || ||||||||| |||| || ||||||||||||| |||||| | ||||||||||| |||||| || |
|
|
| T |
10128735 |
agatgttggagacaattggcccggagttctattatgcccagattgaaaaaggatctaattcttccttccaaccattccgatcccttgagcatataaagtt |
10128834 |
T |
|
| Q |
118 |
cgacaacatgccaaattggaatgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgttctgaacta |
217 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||| ||||| | ||| |||||| |||||| | |||||| |
|
|
| T |
10128835 |
cgacaacatggtcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggctatagagttatggaattgtccagaacta |
10128934 |
T |
|
| Q |
218 |
aggggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactattggaaacagagccaaacactatgcattggttgt |
317 |
Q |
| |
|
|||||||| ||||| | ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| ||| ||| |||||||||||| |
|
|
| T |
10128935 |
aggggacatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaaca---ccatctactctgcattggttgt |
10129031 |
T |
|
| Q |
318 |
cgtcaataaagaaaattaatatcaatgggcttgatggaaggacccaattgtcattg |
373 |
Q |
| |
|
| |||||||| ||||| |||||||||||||||| || ||| |||||||||||||| |
|
|
| T |
10129032 |
cttcaataaaaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattg |
10129087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 10519295 - 10519647
Alignment:
| Q |
18 |
agatgttggagacaattggcacagagttctattttgtccagattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaatt |
117 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| || ||||||||| ||||| || ||||||||||||| |||||| ||||||||||||||||||| || |
|
|
| T |
10519295 |
agatgttggagacaattggcccggagttctattatgcccagattgaagaaggatctaattcttccttccaaccattcccatcccttgagcgtataatgtt |
10519394 |
T |
|
| Q |
118 |
cgacaacatgccaaattggaatgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgttctgaacta |
217 |
Q |
| |
|
||||||||||| ||||||||||||||| | ||||| |||||||||||| |||||||||||| ||||| | ||| |||||| ||||||| | |||||| |
|
|
| T |
10519395 |
cgacaacatgctcaattggaatgaatggattcccttcgaaggcataaaatttgcttttcctcaacttaaggctataaagttacgtaattgtccagaacta |
10519494 |
T |
|
| Q |
218 |
aggggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactattggaaacagagccaaacactatgcattggttgt |
317 |
Q |
| |
|
|||||||| ||||| | ||||||||||| |||||||||||||| ||| ||||||| ||| |||||||||||| ||| ||| |||||||||||| |
|
|
| T |
10519495 |
aggggacatttgcccaccaaccttccttccatagaagaaattgtaataaaaggttgtgttcatctattggaaaca---ccatctactttgcattggttgt |
10519591 |
T |
|
| Q |
318 |
cgtcaataaagaaaattaatatcaatgggcttgatggaaggacccaattgtcattg |
373 |
Q |
| |
|
| |||||||| ||||| |||||||||||||||| || ||| |||||||||||||| |
|
|
| T |
10519592 |
cttcaataaaaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattg |
10519647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 42 - 373
Target Start/End: Complemental strand, 11780217 - 11779889
Alignment:
| Q |
42 |
agttctattttgtccagattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaattcgacaacatgccaaattggaatga |
141 |
Q |
| |
|
||||||||| ||||||| || | ||| |||||||||||||||| ||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
11780217 |
agttctattatgtccagggagaagtaggttccaattcttccttccaaccatttccatccctcgagcttataaaatttgacaacatgccaaattggaatga |
11780118 |
T |
|
| Q |
142 |
atggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgttctgaactaaggggacaattgcctagcaacctt |
241 |
Q |
| |
|
|||| | ||||||||||| |||||| |||| ||||||||||| | | ||||||||| | ||||||| |||||||||||||||| ||||||| ||||||| |
|
|
| T |
11780117 |
atggtttccctttgaaggtataaaatttgcatttcctcgactcaaaactatggagttgcgtaattgtcctgaactaaggggacatttgcctaccaacctt |
11780018 |
T |
|
| Q |
242 |
ccttgcatagaagaaattgatatatcaggttgttctcaactattggaaacagagccaaacactatgcattggttgtcgtcaataaagaaaattaatatca |
341 |
Q |
| |
|
|||||||| |||||||||| ||| |||||||||||| |||||||||| | ||| ||| |||||||||||||||||||||| |||| ||||||| |
|
|
| T |
11780017 |
ccttgcatcgaagaaattgtaataaaaggttgttctcatctattggaaa---aaccatctactttgcattggttgtcgtcaataaaagaaatgaatatca |
11779921 |
T |
|
| Q |
342 |
atgggcttgatggaaggacccaattgtcattg |
373 |
Q |
| |
|
| || |||| || || ||| |||||||||||| |
|
|
| T |
11779920 |
aaggacttggtgaaaagacacaattgtcattg |
11779889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 10079220 - 10079549
Alignment:
| Q |
18 |
agatgttggagacaattggcacagagttctattttgtccagattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaatt |
117 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| |||||||||||| |||||||| | |||| ||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
10079220 |
agatgttggagacaattggcccggagttctattatgtccagattgaagaaggctctgaatctttcttccaaccatttccatcccttgagcgcataaaatt |
10079319 |
T |
|
| Q |
118 |
cgacaacatgccaaattggaatgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgttctgaacta |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||| ||||| ||| |||||||||||||||| |||||||||| || ||||| |||||||| |
|
|
| T |
10079320 |
taacaacatgccaaattggaatcaatggcttccctttgaaggaataaattttgtttttcctcgacttagaactatggagttagatgattgtcctgaacta |
10079419 |
T |
|
| Q |
218 |
aggggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactattggaaacagagccaaacactatgcattggttgt |
317 |
Q |
| |
|
| ||| || || |||||| ||||||||||||||||||||||| ||| ||||||| | | |||||||||||| ||| ||| || |||||||| |
|
|
| T |
10079420 |
aaggggcattttcctagcgaccttccttgcatagaagaaattatgataaaaggttgtgcgaatctattggaaaca---ccacctactttggattggttgc |
10079516 |
T |
|
| Q |
318 |
cgtcaataaagaaaattaatatcaatgggcttg |
350 |
Q |
| |
|
||||| |||| ||||||||||||||||| |||| |
|
|
| T |
10079517 |
cgtcagtaaaaaaaattaatatcaatggtcttg |
10079549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 10186190 - 10186519
Alignment:
| Q |
18 |
agatgttggagacaattggcacagagttctattttgtccagattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaatt |
117 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| |||||||||||| |||||||| | |||| ||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
10186190 |
agatgttggagacaattggcccggagttctattatgtccagattgaagaaggctctgaatctttcttccaaccatttccatcccttgagcgcataaaatt |
10186289 |
T |
|
| Q |
118 |
cgacaacatgccaaattggaatgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgttctgaacta |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||| ||||| ||| |||||||||||||||| |||||||||| || ||||| |||||||| |
|
|
| T |
10186290 |
taacaacatgccaaattggaatcaatggcttccctttgaaggaataaattttgtttttcctcgacttagaactatggagttagatgattgtcctgaacta |
10186389 |
T |
|
| Q |
218 |
aggggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactattggaaacagagccaaacactatgcattggttgt |
317 |
Q |
| |
|
| ||| || |||||||| ||||||||||||||||||||||| ||| ||||||| | | |||||||| ||| ||| ||| || |||||||| |
|
|
| T |
10186390 |
aaggggcatttgcctagtgaccttccttgcatagaagaaattatgataaaaggttgtgcgaatctattggataca---ccacctactttggattggttgc |
10186486 |
T |
|
| Q |
318 |
cgtcaataaagaaaattaatatcaatgggcttg |
350 |
Q |
| |
|
||||| |||| ||||||||||||||||| |||| |
|
|
| T |
10186487 |
cgtcagtaaaaaaaattaatatcaatggtcttg |
10186519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 42 - 373
Target Start/End: Original strand, 11771068 - 11771396
Alignment:
| Q |
42 |
agttctattttgtccagattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaattcgacaacatgccaaattggaatga |
141 |
Q |
| |
|
||||||||| ||||||| || | ||| |||||||||||||||| ||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
11771068 |
agttctattatgtccagggagaagtaggttccaattcttccttccaaccatttccatccctcgagcttataaaatttgacaacatgccaaattggaatga |
11771167 |
T |
|
| Q |
142 |
atggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgttctgaactaaggggacaattgcctagcaacctt |
241 |
Q |
| |
|
|||||| || |||||||| |||||| |||||||||||||||| | | ||||||||| | ||||||| |||||||||||| ||| || |||| ||||||| |
|
|
| T |
11771168 |
atggcttccttttgaaggtataaaatttgcttttcctcgactcaaaactatggagttgcgtaattgtcctgaactaagggtacattttcctaccaacctt |
11771267 |
T |
|
| Q |
242 |
ccttgcatagaagaaattgatatatcaggttgttctcaactattggaaacagagccaaacactatgcattggttgtcgtcaataaagaaaattaatatca |
341 |
Q |
| |
|
|||||||| |||||||||| || |||||||||||| |||||||||| | ||| ||| |||||||||||||||||||||| |||| ||||||| |
|
|
| T |
11771268 |
ccttgcatcgaagaaattgtaatcaaaggttgttctcatctattggaaa---aaccatctactttgcattggttgtcgtcaataaaagaaatgaatatca |
11771364 |
T |
|
| Q |
342 |
atgggcttgatggaaggacccaattgtcattg |
373 |
Q |
| |
|
| || |||| || || ||| || ||||||||| |
|
|
| T |
11771365 |
acggccttggtgaaaagacacagttgtcattg |
11771396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 23 - 380
Target Start/End: Original strand, 10502401 - 10502752
Alignment:
| Q |
23 |
ttggagacaattggcacagagttctattttgtccagattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaattcgaca |
122 |
Q |
| |
|
||||||| ||||||| |||||||||||| |||| | || ||||| || |||||||||||| ||||||||| ||||||||| |||||| ||| || |
|
|
| T |
10502401 |
ttggagaaaattggcccagagttctattgtgtcg---tagaagaaggttctgattcttccttccaaccatttccctcccttgagtgtataacatttttca |
10502497 |
T |
|
| Q |
123 |
acatgccaaattggaatgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgttctgaactaagggg |
222 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||| | || |||| |||||||| |||| | || || || ||| ||||||||||||| | ||||| |
|
|
| T |
10502498 |
acatgccaaattggaaggaatggctttcctttgaaggaaacaattttgcctttcctcgtcttaaaattctgaagatacttaattgttctgaattgagggg |
10502597 |
T |
|
| Q |
223 |
acaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactattggaaacagagccaaacactatgcattggttgtcgtca |
322 |
Q |
| |
|
| || ||| || ||||| ||| |||||||||||||| ||| ||||||| |||| |||||||||||| ||| ||| |||||||| |||||||| |
|
|
| T |
10502598 |
gaatttaccttgccacctttctttcatagaagaaattgtaatagaaggttgtgctcatctattggaaacaccgcc---tactttgcattggctgtcgtca |
10502694 |
T |
|
| Q |
323 |
ataaagaaaattaatatcaatgggcttgatggaaggacccaattgtcattgattggga |
380 |
Q |
| |
|
| || ||| ||||||||||||||||| || || ||| ||||| |||||| |||||| |
|
|
| T |
10502695 |
ttgaaaaaaggtaatatcaatgggcttggtgaaaagactcaattatcattgcttggga |
10502752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 10530457 - 10530731
Alignment:
| Q |
18 |
agatgttggagacaattggcacagagttctattttgtcca-gattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaat |
116 |
Q |
| |
|
|||| ||||||| ||||||| |||||||||||| |||||| || || ||||| || ||||||||||||| ||||||||| |||||||||||||||| || |
|
|
| T |
10530457 |
agatattggagagaattggctcagagttctattgtgtccaagaagga-gaaggttcaaattcttccttccaaccatttccgtcccttgagcgtataagat |
10530555 |
T |
|
| Q |
117 |
tcgacaacatgccaaattggaatgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgttctgaact |
216 |
Q |
| |
|
| | | |||||||||||||||||||||||| || |||||||| | | |||||||||| | |||| | | | |||||| |||||||| | ||| | |
|
|
| T |
10530556 |
ttcaaatcatgccaaattggaatgaatggctcccttttgaaggaaacagctttgcttttccatgtcttaaaactcttgagttatataattgtccagaatt |
10530655 |
T |
|
| Q |
217 |
aaggggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactattggaaaca |
292 |
Q |
| |
|
|||||||| || |||||| |||| ||| ||||||||||||| | ||| ||||||| ||| |||||||||||| |
|
|
| T |
10530656 |
taggggacattttcctagccacctatcttccatagaagaaattcaaatagaaggttgtgctcgtctattggaaaca |
10530731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 379 - 451
Target Start/End: Original strand, 9851940 - 9852012
Alignment:
| Q |
379 |
gattaaaaagtgtgttgagctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttgaga |
451 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9851940 |
gattgaaaagtgtgttaagctattagctgtgccaaaattgattatgagaagcacttgtcttacacacttgaga |
9852012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 379 - 448
Target Start/End: Original strand, 10519686 - 10519755
Alignment:
| Q |
379 |
gattaaaaagtgtgttgagctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttg |
448 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
10519686 |
gattaaaaagtgtgttaagctattagctgtgccaaaattgattctgaaaagcacttgtcttacacacttg |
10519755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 396 - 448
Target Start/End: Original strand, 10034221 - 10034273
Alignment:
| Q |
396 |
agctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttg |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10034221 |
agctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttg |
10034273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 379 - 451
Target Start/End: Complemental strand, 10431909 - 10431837
Alignment:
| Q |
379 |
gattaaaaagtgtgttgagctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttgaga |
451 |
Q |
| |
|
|||| |||| |||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10431909 |
gattgaaaactgtgttaagctattagttgtgccaaaattgattctgagaagcacttgtcttacacacttgaga |
10431837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 379 - 451
Target Start/End: Original strand, 11771435 - 11771507
Alignment:
| Q |
379 |
gattaaaaagtgtgttgagctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttgaga |
451 |
Q |
| |
|
|||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11771435 |
gattgaaaagtatgttgagctatcagttgtgccaaaattgattttgagaagcacttgtcttacatacttgaga |
11771507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 10679255 - 10679389
Alignment:
| Q |
25 |
ggagacaattggcacagagttctattttgtcca-gattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaattcgacaa |
123 |
Q |
| |
|
||||| ||||||| |||||||||||| |||||| || || ||||| || ||||||||||||| ||||||||| ||||||||| |||||| ||| | | |
|
|
| T |
10679255 |
ggagagaattggctcagagttctattgtgtccaagaagga-gaaggttcaaattcttccttccaaccatttccgtcccttgagtgtataagatttcaaat |
10679353 |
T |
|
| Q |
124 |
catgccaaattggaatgaatggctgccctttgaagg |
159 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| |
|
|
| T |
10679354 |
catgccaaattggaatgaatggctcccttttgaagg |
10679389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 398 - 451
Target Start/End: Original strand, 10582831 - 10582884
Alignment:
| Q |
398 |
ctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttgaga |
451 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10582831 |
ctattagctgtgccaaaattgattctgagaagcacttgtcttacacacttgaga |
10582884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 379 - 451
Target Start/End: Original strand, 9841059 - 9841131
Alignment:
| Q |
379 |
gattaaaaagtgtgttgagctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttgaga |
451 |
Q |
| |
|
|||| ||||||||||| | ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9841059 |
gattgaaaagtgtgttaaactattagttgttccaaaattgattctgagaagcacttgtcttacacacttgaga |
9841131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 379 - 451
Target Start/End: Complemental strand, 11779850 - 11779778
Alignment:
| Q |
379 |
gattaaaaagtgtgttgagctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttgaga |
451 |
Q |
| |
|
|||| ||||||||| |||||||| || |||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
11779850 |
gattgaaaagtgtgctgagctatcagttgtgccaaaattgattttgagaagcatttgtcttacatacttgaga |
11779778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 396 - 451
Target Start/End: Original strand, 10129143 - 10129198
Alignment:
| Q |
396 |
agctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttgaga |
451 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
10129143 |
agctattagctgtgccaaaattgattctgaaaagcacttgtcttacacacttgaga |
10129198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 389 - 448
Target Start/End: Complemental strand, 10373700 - 10373641
Alignment:
| Q |
389 |
tgtgttgagctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttg |
448 |
Q |
| |
|
|||||| || |||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10373700 |
tgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttg |
10373641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 389 - 449
Target Start/End: Original strand, 10262912 - 10262972
Alignment:
| Q |
389 |
tgtgttgagctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttga |
449 |
Q |
| |
|
|||||| || |||||||||| |||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
10262912 |
tgtgttaagttattagctgttccaaaattgattctgagaagcacttgtctaacacacttga |
10262972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 408 - 448
Target Start/End: Original strand, 10665696 - 10665736
Alignment:
| Q |
408 |
tgccaaaattgattttgagaagcacttgtcttacacacttg |
448 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10665696 |
tgccaaaattgattatgagaagcacttgtcttacacacttg |
10665736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 405 - 448
Target Start/End: Complemental strand, 10361643 - 10361600
Alignment:
| Q |
405 |
ctgtgccaaaattgattttgagaagcacttgtcttacacacttg |
448 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
10361643 |
ctgtgccaaaattgattctgagaagcacttgtcttacactcttg |
10361600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 449
Target Start/End: Complemental strand, 13853329 - 13853259
Alignment:
| Q |
379 |
gattaaaaagtgtgttgagctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttga |
449 |
Q |
| |
|
|||| ||||||||||| ||| | | || ||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
13853329 |
gattgaaaagtgtgttatgctgtcatctatgccaaaattgattttgagaagcacttttcttcaacacttga |
13853259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 449
Target Start/End: Original strand, 10091001 - 10091065
Alignment:
| Q |
385 |
aaagtgtgttgagctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttga |
449 |
Q |
| |
|
|||||||| | ||||||||||| |||||||| ||||| ||||||||||||||| |||||||| |
|
|
| T |
10091001 |
aaagtgtgctaagctattagctatgccaaaaatgattccaagaagcacttgtcttcaacacttga |
10091065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 449
Target Start/End: Original strand, 10197883 - 10197947
Alignment:
| Q |
385 |
aaagtgtgttgagctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttga |
449 |
Q |
| |
|
|||||||| | ||||||||||| |||||||| ||||| ||||||||||||||| |||||||| |
|
|
| T |
10197883 |
aaagtgtgctaagctattagctatgccaaaaatgattccaagaagcacttgtcttcaacacttga |
10197947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 55861 - 55509
Alignment:
| Q |
18 |
agatgttggagacaattggcacagagttctattttgtccagattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaatt |
117 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| || ||||||||| |||| || ||||||||||||| |||||| | |||||||||| |||||| || |
|
|
| T |
55861 |
agatgttggagacaattggcccggagttctattatgcccagattgaataaggatctaattcttccttccaaccattcctatcccttgagtttataaagtt |
55762 |
T |
|
| Q |
118 |
cgacaacatgccaaattggaatgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgttctgaacta |
217 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||| ||||| | || ||||||| | ||||| | |||||| |
|
|
| T |
55761 |
cgacaacatgttcaattggaatgaatggattccctttgaaggcataaaatttgcttttcctcaacttaaggcaatagagttacgtgattgtccagaacta |
55662 |
T |
|
| Q |
218 |
aggggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactattggaaacagagccaaacactatgcattggttgt |
317 |
Q |
| |
|
|||||||| ||||| | ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| ||| ||| |||||||||||| |
|
|
| T |
55661 |
aggggacatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaaca---ccatctactctgcattggttgt |
55565 |
T |
|
| Q |
318 |
cgtcaataaagaaaattaatatcaatgggcttgatggaaggacccaattgtcattg |
373 |
Q |
| |
|
| |||||||| | ||| |||||||||||||||| || ||| |||||||||||||| |
|
|
| T |
55564 |
cttcaataaaaataatgaatatcaatgggcttggtgaaagttcccaattgtcattg |
55509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 396 - 449
Target Start/End: Complemental strand, 55453 - 55400
Alignment:
| Q |
396 |
agctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttga |
449 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
55453 |
agctattagctgtgccaaaattgattctgaaaagcacttgtcttacacacttga |
55400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 9e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 20 - 373
Target Start/End: Original strand, 26908700 - 26909050
Alignment:
| Q |
20 |
atgttggagacaattggcacagagttctattttgtccagattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaattcg |
119 |
Q |
| |
|
|||||||||||||||||| |||| | ||||| |||||||||||| ||||||||||||| |||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
26908700 |
atgttggagacaattggcccagattactattatgtccagattgaggaaggctccaatttttccttccaaccatttcaatcccttgagcgtataaaattta |
26908799 |
T |
|
| Q |
120 |
acaacatgccaaattggaatgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgttctgaactaag |
219 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||| || || || ||||||||||||| ||| ||| ||||| ||||||||| | |||||| |
|
|
| T |
26908800 |
acaacatgccaaattggaatcaatggcttccctttgaaggaatgaatttttcttttcctcgactcagaactattgagttgcataattgtccaaaactaaa |
26908899 |
T |
|
| Q |
220 |
gggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactattggaaacagagccaaacactatgcattggttgtcg |
319 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||| |||||| | ||| |||||||||||| ||| ||| | |||||| ||||| |
|
|
| T |
26908900 |
aggacttttgcctagcaaccttccttgcatagaagaaattgtaataaaaggttgctatcatctattggaaaca---ccatctactttacattgggtgtcg |
26908996 |
T |
|
| Q |
320 |
tcaataaagaaaattaatatcaatgggcttgatggaaggacccaattgtcattg |
373 |
Q |
| |
|
|| ||| ||||||||||||| ||||||||| | ||||||| |||||||||| |
|
|
| T |
26908997 |
tccataccgaaaattaatatccatgggcttggtaaaaggaccatattgtcattg |
26909050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 449
Target Start/End: Original strand, 26909089 - 26909159
Alignment:
| Q |
379 |
gattaaaaagtgtgttgagctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttga |
449 |
Q |
| |
|
|||| |||| ||||||| |||||||| | |||||||||||||| |||||||||| |||||| |||||||| |
|
|
| T |
26909089 |
gattcaaaattgtgttgggctattaggtttgccaaaattgattctgagaagcacatgtcttcaacacttga |
26909159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 11486846 - 11487168
Alignment:
| Q |
19 |
gatgttggagacaattggcacagagttctattttgtccagattgatgaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaattc |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||| || | ||| || ||||||||||||| ||||||| |||||||||| |||||| ||| |
|
|
| T |
11486846 |
gatgttggagacaattggccaagagttctattgtgtcaaggaaggaaaagcttctaattcttccttccaaccattttcatcccttgaatgtataacattt |
11486945 |
T |
|
| Q |
119 |
gacaacatgccaaattggaatgaatggctgccctttgaaggcataaaagttgcttttcctcgacttagagttatggagttacataattgttctgaactaa |
218 |
Q |
| |
|
| |||||||| ||||||||| |||||||| || |||||||||| | || |||||||||| |||||| | | |||||||||| |||| ||| |||| |
|
|
| T |
11486946 |
gtcaacatgcaaaattggaaggaatggcttccttttgaaggcaaatttttttcttttcctcgtcttagaactcttgagttacatagttgtcatgagctaa |
11487045 |
T |
|
| Q |
219 |
ggggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgttctcaactattggaaacagagccaaacactatgcattggttgtc |
318 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||| ||||| ||||| |||||||| | || || ||||||||| ||| || ||||||||||||| |
|
|
| T |
11487046 |
ggggacatttgcctagccaccttccttgcatagaaaaaattaatataacaggttgtgcccatcttttggaaaca---ccatctgctttgcattggttgtc |
11487142 |
T |
|
| Q |
319 |
gtcaataaagaaaattaatatcaatg |
344 |
Q |
| |
|
||||||||| |||||| ||||||||| |
|
|
| T |
11487143 |
gtcaataaaaaaaattgatatcaatg |
11487168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 292
Target Start/End: Complemental strand, 44955889 - 44955662
Alignment:
| Q |
65 |
gaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaattcgacaacatgccaaattggaatgaatggctgccctttgaaggcataa |
164 |
Q |
| |
|
||||| |||||||| ||||||| |||||| || |||||||||| ||| ||| | |||| ||| |||||||||| || ||| | |||||| |||| | | |
|
|
| T |
44955889 |
gaaggttccaattcctccttccaaccattcccgtcccttgagcatatcaaacttcacaaaatgtcaaattggaaggagtggattccctttaaaggaagca |
44955790 |
T |
|
| Q |
165 |
aagttgcttttcctcgacttagagttatggagttacataattgttctgaactaaggggacaattgcctagcaaccttccttgcatagaagaaattgatat |
264 |
Q |
| |
|
| ||||||||||||| |||||| || || ||||||| ||||| | ||| ||| |||| ||||| || | ||| ||| ||||||||||||||| || |
|
|
| T |
44955789 |
attttgcttttcctcgtcttagaattttgacgttacatgattgtccaaaacataggcgacacttgccaagtcatctttcttccatagaagaaattgaaat |
44955690 |
T |
|
| Q |
265 |
atcaggttgttctcaactattggaaaca |
292 |
Q |
| |
|
| || |||| |||| |||||||||||| |
|
|
| T |
44955689 |
aaaagattgtgctcatctattggaaaca |
44955662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 17851138 - 17851018
Alignment:
| Q |
65 |
gaaggctccaattcttccttcctaccatttccatcccttgagcgtataaaattcgacaacatgccaaattggaatgaatggctgccctttgaaggcataa |
164 |
Q |
| |
|
||||| |||||||||||||| | ||||||||| ||||||||| || ||| || |||||||||||||||||| |||||||| ||||||| |||||| | |
|
|
| T |
17851138 |
gaaggttccaattcttcctttcaaccatttccgtcccttgagtgtttaatgtttcgcaacatgccaaattggaaggaatggcttccctttgtaggcatca |
17851039 |
T |
|
| Q |
165 |
aagttgcttttcctcgactta |
185 |
Q |
| |
|
| ||||||||||||| |||| |
|
|
| T |
17851038 |
attttgcttttcctcgtctta |
17851018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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