View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2838_high_2 (Length: 867)

Name: NF2838_high_2
Description: NF2838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2838_high_2
NF2838_high_2
[»] chr4 (13 HSPs)
chr4 (1-448)||(3189217-3189663)
chr4 (443-613)||(3187799-3187969)
chr4 (701-851)||(3187564-3187714)
chr4 (769-834)||(21355926-21355991)
chr4 (769-827)||(21604485-21604543)
chr4 (769-827)||(46164368-46164426)
chr4 (769-827)||(47825967-47826025)
chr4 (769-829)||(14799997-14800057)
chr4 (769-827)||(8432982-8433040)
chr4 (769-835)||(23218214-23218280)
chr4 (769-835)||(45144031-45144097)
chr4 (769-835)||(45152800-45152866)
chr4 (769-834)||(13740247-13740312)
[»] chr1 (5 HSPs)
chr1 (711-851)||(52801519-52801659)
chr1 (769-834)||(17480982-17481047)
chr1 (769-827)||(29599253-29599311)
chr1 (769-827)||(324738-324796)
chr1 (769-827)||(26014526-26014584)
[»] chr5 (7 HSPs)
chr5 (769-835)||(23737941-23738007)
chr5 (769-835)||(19209106-19209172)
chr5 (769-827)||(32863703-32863761)
chr5 (770-825)||(22273148-22273203)
chr5 (769-827)||(10572762-10572820)
chr5 (769-834)||(3174223-3174288)
chr5 (769-826)||(43300233-43300290)
[»] chr8 (9 HSPs)
chr8 (769-829)||(42808726-42808786)
chr8 (769-827)||(22432293-22432351)
chr8 (769-827)||(29182577-29182635)
chr8 (769-822)||(33360436-33360489)
chr8 (769-835)||(1668164-1668230)
chr8 (769-835)||(16658879-16658945)
chr8 (769-835)||(38521220-38521286)
chr8 (774-827)||(780364-780417)
chr8 (769-834)||(22014894-22014959)
[»] chr3 (5 HSPs)
chr3 (770-825)||(40923016-40923071)
chr3 (769-827)||(9456473-9456531)
chr3 (769-835)||(21239494-21239560)
chr3 (770-825)||(2733833-2733888)
chr3 (769-835)||(52893490-52893556)
[»] chr7 (4 HSPs)
chr7 (769-827)||(6472246-6472304)
chr7 (769-827)||(9371866-9371924)
chr7 (769-827)||(21358024-21358082)
chr7 (769-834)||(44660368-44660433)
[»] chr2 (2 HSPs)
chr2 (769-827)||(25697569-25697627)
chr2 (769-835)||(3935366-3935432)
[»] scaffold0005 (1 HSPs)
scaffold0005 (769-829)||(39670-39730)
[»] chr6 (2 HSPs)
chr6 (770-825)||(7171087-7171142)
chr6 (774-827)||(32397297-32397350)
[»] scaffold0393 (1 HSPs)
scaffold0393 (769-834)||(11164-11229)


Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 3189663 - 3189217
Alignment:
Q  1 gtagaccaaatgtgattataattataaataggcaagctct-aagagaataaaaaatacactactactacttgtacnnnnnnnnnna-tatcttttctcca 98  Q
    ||||||||||| || |||||||||||||||||||| |||| ||||||||||||| |||| |||||||||||||||          | |||||||||| ||    
T  3189663 gtagaccaaatatggttataattataaataggcaaactctcaagagaataaaaa-tacattactactacttgtacttttttttttaatatcttttctaca 3189565  T
Q  99 ctttcttctcccacaagcaactcatagtaagtttgcttgaagttttttgttccactattcgaaggttgatagtaaaattagtctcgatacaaatacacgt 198  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3189564 ctttcttctcccacaagcaactcatagtaagtttgctcgaagttttttgttccactattcgaaggttgatagtaaaattagtcttgatacaaatacacgt 3189465  T
Q  199 aaagtctttaaagaaagannnnnnnattatcaaagatccggttttatttcactatacacacgatgtgaacacattttttctttcacgtatataactttcc 298  Q
    ||||||||||||||||||       ||||| ||||||||| ||||||||||||||||||  |||||||||| ||||||||||||| ||||||||||||||    
T  3189464 aaagtctttaaagaaagatttttttattattaaagatccgattttatttcactatacac--gatgtgaacatattttttctttcaagtatataactttcc 3189367  T
Q  299 atatttccattacactctccatttcctttgatacttgtgatcttgaatctgaaatcatggtgaatggctcctacaactttgtgtttggatgcatttgttg 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3189366 atatttccattacactctccatttcctttgatacttgtgatcttgaatctgaaatcatggtgaatggctcctacaacattgtgtttggatgcatttgttg 3189267  T
Q  399 gatcaaagaacaaacggtaaggttttggtaaaatgatgatgaatgaatat 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3189266 gatcaaagaacaaacggtaaggttttggtaaaatgatgatgaatgaatat 3189217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 443 - 613
Target Start/End: Complemental strand, 3187969 - 3187799
Alignment:
Q  443 gaatatttacaattatttcctatttatacatgtaaaagatgaaggaaatctcaaaggctaacgttttgagggaattgtgtcctagttatactagtgttgt 542  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3187969 gaatatttacaattatttcctatttatacatgtaaaagatgaaggaaatctcaaagactaacgttttgagggaattgtgtcctagttatactagtgttgt 3187870  T
Q  543 taagtccccaactaggtgcatgattaagtatcaatcattgataatttcttaagatcacatgtcacaatcac 613  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3187869 taagtccccaactaggtgcatgattaagtatcaatcattgataatttcttaagatcacatgtcacaatcac 3187799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 701 - 851
Target Start/End: Complemental strand, 3187714 - 3187564
Alignment:
Q  701 gtgaattgaacatcttctgtgttatctccatctctctccaaaaaccctcatttaggtaatgtgaaaattgaaattgaatgtattttcctttaaatctgat 800  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3187714 gtgaattgaacatcttctgtgttatctccatctctctccaaaaaccctaatttaggtaatgtgaaaattgaaattgaatgtattttcctttaaatctgat 3187615  T
Q  801 tcttctttgatgactacatgttctttaattgattgattgccatcagttttt 851  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3187614 tcttctttgatgattacatgttctttaattgattgattgccatcagttttt 3187564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 769 - 834
Target Start/End: Original strand, 21355926 - 21355991
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgatt 834  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| ||||||||||||| ||||||    
T  21355926 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttctttagttgatt 21355991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 769 - 827
Target Start/End: Original strand, 21604485 - 21604543
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 827  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  21604485 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 21604543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 769 - 827
Target Start/End: Complemental strand, 46164426 - 46164368
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 827  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  46164426 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 46164368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 769 - 827
Target Start/End: Original strand, 47825967 - 47826025
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 827  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  47825967 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 47826025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 769 - 829
Target Start/End: Complemental strand, 14800057 - 14799997
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaat 829  Q
    ||||||| |||||||||||||| |||| ||||| |||| |||||| ||| |||||||||||    
T  14800057 tgaaattaaatgtattttccttcaaatatgattattctctgatgattacgtgttctttaat 14799997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 827
Target Start/End: Complemental strand, 8433040 - 8432982
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 827  Q
    |||||||||||||  ||||||| || |||||||||  |||||||| |||||||||||||    
T  8433040 tgaaattgaatgttatttccttcaattctgattctgatttgatgattacatgttcttta 8432982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 835
Target Start/End: Complemental strand, 23218280 - 23218214
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 835  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  23218280 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattg 23218214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 835
Target Start/End: Original strand, 45144031 - 45144097
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 835  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  45144031 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattg 45144097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 835
Target Start/End: Original strand, 45152800 - 45152866
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 835  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  45152800 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattg 45152866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 769 - 834
Target Start/End: Complemental strand, 13740312 - 13740247
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgatt 834  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| ||||||    
T  13740312 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgatt 13740247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 2e-61; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 711 - 851
Target Start/End: Complemental strand, 52801659 - 52801519
Alignment:
Q  711 catcttctgtgttatctccatctctctccaaaaaccctcatttaggtaatgtgaaaattgaaattgaatgtattttcctttaaatctgattcttctttga 810  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  52801659 catcttctgtgttatctccatctctctccaaaaaccctaatttaggtaatgtgaaaattgaaattgaatgtatcttcctttaaatctgattcttctctga 52801560  T
Q  811 tgactacatgttctttaattgattgattgccatcagttttt 851  Q
    ||| || ||||||||||||||||||||||||||||||||||    
T  52801559 tgattatatgttctttaattgattgattgccatcagttttt 52801519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 769 - 834
Target Start/End: Complemental strand, 17481047 - 17480982
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgatt 834  Q
    |||||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||| |||||||    
T  17481047 tgaaattgaatgtattttccttcaaatatgattattctttgatgattacatgttctttgattgatt 17480982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 769 - 827
Target Start/End: Complemental strand, 29599311 - 29599253
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 827  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  29599311 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 29599253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 827
Target Start/End: Original strand, 324738 - 324796
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 827  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| || ||||||||||    
T  324738 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattagatgttcttta 324796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 827
Target Start/End: Original strand, 26014526 - 26014584
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 827  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||| ||||    
T  26014526 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttattta 26014584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 769 - 835
Target Start/End: Original strand, 23737941 - 23738007
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 835  Q
    |||||||||||||| ||||||| ||||||||||||||||| |||| ||||||||||||| |||||||    
T  23737941 tgaaattgaatgtaatttccttcaaatctgattcttctttaatgattacatgttctttagttgattg 23738007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 769 - 835
Target Start/End: Complemental strand, 19209172 - 19209106
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 835  Q
    |||||||||||||| ||||||| |||||||||||| |||| |||| ||||||||||||| |||||||    
T  19209172 tgaaattgaatgtaatttccttcaaatctgattctgctttaatgattacatgttctttagttgattg 19209106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 769 - 827
Target Start/End: Original strand, 32863703 - 32863761
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 827  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  32863703 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 32863761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 770 - 825
Target Start/End: Complemental strand, 22273203 - 22273148
Alignment:
Q  770 gaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctt 825  Q
    |||||||||| |||||||||| |||| ||||| |||| |||||| |||||||||||    
T  22273203 gaaattgaatctattttccttcaaatatgattattctctgatgattacatgttctt 22273148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 827
Target Start/End: Original strand, 10572762 - 10572820
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 827  Q
    |||||||||||||| ||||||| || | |||||||  |||||||| |||||||||||||    
T  10572762 tgaaattgaatgtaatttccttcaattgtgattctgatttgatgattacatgttcttta 10572820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 769 - 834
Target Start/End: Original strand, 3174223 - 3174288
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgatt 834  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| ||||||    
T  3174223 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgatt 3174288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 769 - 826
Target Start/End: Original strand, 43300233 - 43300290
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttt 826  Q
    |||||||||||||| |||| || || ||||||| |||||| |||| ||||||||||||    
T  43300233 tgaaattgaatgtaatttcgttcaattctgatttttctttaatgattacatgttcttt 43300290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 769 - 829
Target Start/End: Original strand, 42808726 - 42808786
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaat 829  Q
    |||||||||||||||||||||| |||| ||||| |||| |||||| |||||||||||||||    
T  42808726 tgaaattgaatgtattttccttcaaatatgattattctctgatgattacatgttctttaat 42808786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 769 - 827
Target Start/End: Complemental strand, 22432351 - 22432293
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 827  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  22432351 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 22432293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 769 - 827
Target Start/End: Complemental strand, 29182635 - 29182577
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 827  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  29182635 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 29182577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 769 - 822
Target Start/End: Original strand, 33360436 - 33360489
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgtt 822  Q
    |||||||||||||||||||||| |||| ||||| |||| |||||| ||||||||    
T  33360436 tgaaattgaatgtattttccttcaaatatgattattctctgatgattacatgtt 33360489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 835
Target Start/End: Original strand, 1668164 - 1668230
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 835  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  1668164 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattg 1668230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 835
Target Start/End: Original strand, 16658879 - 16658945
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 835  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  16658879 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattg 16658945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 835
Target Start/End: Complemental strand, 38521286 - 38521220
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 835  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  38521286 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattg 38521220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 774 - 827
Target Start/End: Complemental strand, 780417 - 780364
Alignment:
Q  774 ttgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 827  Q
    ||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  780417 ttgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 780364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 769 - 834
Target Start/End: Original strand, 22014894 - 22014959
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgatt 834  Q
    |||||||||||||| ||||||| || | ||||| || |||||||| ||||| ||||||| ||||||    
T  22014894 tgaaattgaatgtaatttccttcaattatgattattgtttgatgattacatattctttagttgatt 22014959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 770 - 825
Target Start/End: Original strand, 40923016 - 40923071
Alignment:
Q  770 gaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctt 825  Q
    ||||||||||||||||||||| |||| ||||| |||| |||||| |||||||||||    
T  40923016 gaaattgaatgtattttccttcaaatatgattattctctgatgattacatgttctt 40923071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 769 - 827
Target Start/End: Original strand, 9456473 - 9456531
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 827  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  9456473 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 9456531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 769 - 835
Target Start/End: Original strand, 21239494 - 21239560
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 835  Q
    |||||||||||||| ||||||| || ||||||| |  |||||||| ||||||||||||| |||||||    
T  21239494 tgaaattgaatgtaatttccttcaattctgattatgatttgatgattacatgttctttagttgattg 21239560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 770 - 825
Target Start/End: Original strand, 2733833 - 2733888
Alignment:
Q  770 gaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctt 825  Q
    |||||||||| |||||||||| |||| ||||| |||| |||||| |||||||||||    
T  2733833 gaaattgaatctattttccttcaaatatgattattctctgatgattacatgttctt 2733888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 835
Target Start/End: Original strand, 52893490 - 52893556
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 835  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  52893490 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattg 52893556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 769 - 827
Target Start/End: Complemental strand, 6472304 - 6472246
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 827  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  6472304 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 6472246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 769 - 827
Target Start/End: Original strand, 9371866 - 9371924
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 827  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  9371866 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 9371924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 769 - 827
Target Start/End: Complemental strand, 21358082 - 21358024
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 827  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  21358082 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 21358024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 769 - 834
Target Start/End: Original strand, 44660368 - 44660433
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgatt 834  Q
    |||||||||||||| |||| || || ||||||| |||||| |||| ||||||||||||| ||||||    
T  44660368 tgaaattgaatgtaatttcgttcaattctgatttttctttaatgattacatgttctttagttgatt 44660433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 769 - 827
Target Start/End: Complemental strand, 25697627 - 25697569
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 827  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  25697627 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 25697569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 835
Target Start/End: Complemental strand, 3935432 - 3935366
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 835  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  3935432 tgaaattgaatgtaatttccttcaattatgattataatttgatgattacatgttctttagttgattg 3935366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 769 - 829
Target Start/End: Original strand, 39670 - 39730
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaat 829  Q
    ||||||| |||||||||||||| |||| ||||| |||| |||||| ||| |||||||||||    
T  39670 tgaaattaaatgtattttccttcaaatatgattattctctgatgattacgtgttctttaat 39730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 770 - 825
Target Start/End: Original strand, 7171087 - 7171142
Alignment:
Q  770 gaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctt 825  Q
    |||||||||| |||||||||| |||| ||||| |||| |||||| |||||||||||    
T  7171087 gaaattgaatctattttccttcaaatatgattattctctgatgattacatgttctt 7171142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 774 - 827
Target Start/End: Original strand, 32397297 - 32397350
Alignment:
Q  774 ttgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 827  Q
    ||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  32397297 ttgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 32397350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 769 - 834
Target Start/End: Complemental strand, 11229 - 11164
Alignment:
Q  769 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgatt 834  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| ||||||    
T  11229 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgatt 11164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University