View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2838_high_6 (Length: 372)
Name: NF2838_high_6
Description: NF2838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2838_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 8172329 - 8171967
Alignment:
| Q |
1 |
ctaatcatataaaatatgttaaagagtatgttgtcagcatcatcgagcaatttacgacttaaacctcgacatgtatttgcttattaggagaggtgaccct |
100 |
Q |
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| T |
8172329 |
ctaataatacaagatatgttaaagagtatgttgtcagcatcatcgatcaatttacgacttaaacctcgacatgtattttcttattaggagaggtgaccct |
8172230 |
T |
|
| Q |
101 |
aaaaatatgttcctctccggtgcaattatctacttgaacaatccaattactcttattcctttggacaaccatatcataatctttcttcacattaagatca |
200 |
Q |
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| T |
8172229 |
aaaaatatgttcctctccggtgcaattatctacttgaacaatccaattactcttattcctttggacaaccatatcataatctttcttcacattaagatca |
8172130 |
T |
|
| Q |
201 |
attttggtcacaagcaacccttctcctataggtaaatatgttgccctaaattgtctccatctcaatgccctatgcctaacattataaccaaccacaagtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8172129 |
attttggtcacaagcaacccttctcctataggtaaatatgttgccctaaattgtctccatctcaatgccctatgcctaacattataaccaaccacaagtg |
8172030 |
T |
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| Q |
301 |
ctccatttttgttggcacctttaaatgctgctaaaagtacttctcttgcattattcatatcac |
363 |
Q |
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|||||| ||| |||||||||||||||||||||| || |||||||||||||||||||| |||| |
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| T |
8172029 |
ctccatctttattggcacctttaaatgctgctagaaaaacttctcttgcattattcatgtcac |
8171967 |
T |
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