View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2838_high_7 (Length: 342)
Name: NF2838_high_7
Description: NF2838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2838_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 3191198 - 3191401
Alignment:
| Q |
11 |
aatgaaatggtccaaccttttcatgagttcgcatgtgaagttccaacatactcttcaagaaggaaatcaatgcgctgatttttccgccaaaagggttctt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
3191198 |
aatgaaatggtccaaccttttcatgagttcgcatgtgaagttccaacgtactcttcaagaaggaaatcaatgtgctgatttttcc-ccaaaagggttctt |
3191296 |
T |
|
| Q |
111 |
ctcaacttaactctgaatattgtgtcatctccgccaatggaggtggagtttgctactgccatgcttgcatatgctttgagaatctccattcctagggagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3191297 |
ctcaacttaactctgaatattgtgtcatctccgccaatggaggtggagtttgctactgccatgcttgcatatgctttgagaatctccattcctagggagt |
3191396 |
T |
|
| Q |
211 |
agttg |
215 |
Q |
| |
|
||||| |
|
|
| T |
3191397 |
agttg |
3191401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 3191449 - 3191521
Alignment:
| Q |
262 |
gtattggcttgaatgagagaaggaataaaaggtttcatgcaaaatgattttaccaagtattttcttgatgatg |
334 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3191449 |
gtattggcttgaatgagagaaggaatagaaggtttcatgcaaaatgattttaccaagtattttcttgatgatg |
3191521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University