View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2838_low_1 (Length: 922)

Name: NF2838_low_1
Description: NF2838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2838_low_1
NF2838_low_1
[»] chr4 (13 HSPs)
chr4 (1-448)||(3189217-3189663)
chr4 (703-906)||(3187511-3187714)
chr4 (443-613)||(3187799-3187969)
chr4 (771-836)||(21355926-21355991)
chr4 (771-829)||(21604485-21604543)
chr4 (771-829)||(46164368-46164426)
chr4 (771-829)||(47825967-47826025)
chr4 (771-831)||(14799997-14800057)
chr4 (771-829)||(8432982-8433040)
chr4 (771-837)||(23218214-23218280)
chr4 (771-837)||(45144031-45144097)
chr4 (771-837)||(45152800-45152866)
chr4 (771-836)||(13740247-13740312)
[»] chr1 (5 HSPs)
chr1 (713-894)||(52801478-52801659)
chr1 (771-836)||(17480982-17481047)
chr1 (771-829)||(29599253-29599311)
chr1 (771-829)||(324738-324796)
chr1 (771-829)||(26014526-26014584)
[»] chr5 (7 HSPs)
chr5 (771-883)||(23737941-23738048)
chr5 (771-883)||(19209065-19209172)
chr5 (771-829)||(32863703-32863761)
chr5 (771-883)||(43300233-43300340)
chr5 (772-827)||(22273148-22273203)
chr5 (771-829)||(10572762-10572820)
chr5 (771-836)||(3174223-3174288)
[»] chr8 (9 HSPs)
chr8 (771-831)||(42808726-42808786)
chr8 (771-829)||(22432293-22432351)
chr8 (771-829)||(29182577-29182635)
chr8 (771-824)||(33360436-33360489)
chr8 (771-837)||(1668164-1668230)
chr8 (771-837)||(16658879-16658945)
chr8 (771-837)||(38521220-38521286)
chr8 (776-829)||(780364-780417)
chr8 (771-836)||(22014894-22014959)
[»] chr3 (5 HSPs)
chr3 (772-827)||(40923016-40923071)
chr3 (771-829)||(9456473-9456531)
chr3 (771-837)||(21239494-21239560)
chr3 (772-827)||(2733833-2733888)
chr3 (771-837)||(52893490-52893556)
[»] chr7 (4 HSPs)
chr7 (771-829)||(6472246-6472304)
chr7 (771-829)||(9371866-9371924)
chr7 (771-829)||(21358024-21358082)
chr7 (771-836)||(44660368-44660433)
[»] chr2 (2 HSPs)
chr2 (771-829)||(25697569-25697627)
chr2 (771-837)||(3935366-3935432)
[»] scaffold0005 (1 HSPs)
scaffold0005 (771-831)||(39670-39730)
[»] chr6 (2 HSPs)
chr6 (772-827)||(7171087-7171142)
chr6 (776-829)||(32397297-32397350)
[»] scaffold0393 (1 HSPs)
scaffold0393 (771-836)||(11164-11229)


Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 3189663 - 3189217
Alignment:
Q  1 gtagaccaaatgtgattataattataaataggcaagctct-aagagaataaaaaatacactactactacttgtacnnnnnnnnnna-tatcttttctcca 98  Q
    ||||||||||| || |||||||||||||||||||| |||| ||||||||||||| |||| |||||||||||||||          | |||||||||| ||    
T  3189663 gtagaccaaatatggttataattataaataggcaaactctcaagagaataaaaa-tacattactactacttgtacttttttttttaatatcttttctaca 3189565  T
Q  99 ctttcttctcccacaagcaactcatagtaagtttgcttgaagttttttgttccactattcgaaggttgatagtaaaattagtctcgatacaaatacacgt 198  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3189564 ctttcttctcccacaagcaactcatagtaagtttgctcgaagttttttgttccactattcgaaggttgatagtaaaattagtcttgatacaaatacacgt 3189465  T
Q  199 aaagtctttaaagaaagannnnnnnattatcaaagatccggttttatttcactatacacacgatgtgaacacattttttctttcacgtatataactttcc 298  Q
    ||||||||||||||||||       ||||| ||||||||| ||||||||||||||||||  |||||||||| ||||||||||||| ||||||||||||||    
T  3189464 aaagtctttaaagaaagatttttttattattaaagatccgattttatttcactatacac--gatgtgaacatattttttctttcaagtatataactttcc 3189367  T
Q  299 atatttccattacactctccatttcctttgatacttgtgatcttgaatctgaaatcatggtgaatggctcctacaactttgtgtttggatgcatttgttg 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3189366 atatttccattacactctccatttcctttgatacttgtgatcttgaatctgaaatcatggtgaatggctcctacaacattgtgtttggatgcatttgttg 3189267  T
Q  399 gatcaaagaacaaacggtaaggttttggtaaaatgatgatgaatgaatat 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3189266 gatcaaagaacaaacggtaaggttttggtaaaatgatgatgaatgaatat 3189217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 703 - 906
Target Start/End: Complemental strand, 3187714 - 3187511
Alignment:
Q  703 gtgaattgaacatcttctgtgttatctccatctctctccaaaaaccctcatttaggtaatgtgaaaattgaaattgaatgtattttcctttaaatctgat 802  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3187714 gtgaattgaacatcttctgtgttatctccatctctctccaaaaaccctaatttaggtaatgtgaaaattgaaattgaatgtattttcctttaaatctgat 3187615  T
Q  803 tcttctttgatgactacatgttctttaattgattgattgccatcagttttttcatctattgttgttaaacctagttgattacattaaaagaagaatgtca 902  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3187614 tcttctttgatgattacatgttctttaattgattgattgccatcagttttttcatctattgttgttaaacctagttgattgcattaaaagaagaatgtca 3187515  T
Q  903 gtat 906  Q
    ||||    
T  3187514 gtat 3187511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 443 - 613
Target Start/End: Complemental strand, 3187969 - 3187799
Alignment:
Q  443 gaatatttacaattatttcctatttatacatgtaaaagatgaaggaaatctcaaaggctaacgttttgagggaattgtgtcctagttatactagtgttgt 542  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3187969 gaatatttacaattatttcctatttatacatgtaaaagatgaaggaaatctcaaagactaacgttttgagggaattgtgtcctagttatactagtgttgt 3187870  T
Q  543 taagtccccaactaggtgcatgattaagtatcaatcattgataatttcttaagatcacatgtcacaatcac 613  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3187869 taagtccccaactaggtgcatgattaagtatcaatcattgataatttcttaagatcacatgtcacaatcac 3187799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 771 - 836
Target Start/End: Original strand, 21355926 - 21355991
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgatt 836  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| ||||||||||||| ||||||    
T  21355926 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttctttagttgatt 21355991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 771 - 829
Target Start/End: Original strand, 21604485 - 21604543
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 829  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  21604485 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 21604543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 771 - 829
Target Start/End: Complemental strand, 46164426 - 46164368
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 829  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  46164426 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 46164368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 771 - 829
Target Start/End: Original strand, 47825967 - 47826025
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 829  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  47825967 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 47826025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 771 - 831
Target Start/End: Complemental strand, 14800057 - 14799997
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaat 831  Q
    ||||||| |||||||||||||| |||| ||||| |||| |||||| ||| |||||||||||    
T  14800057 tgaaattaaatgtattttccttcaaatatgattattctctgatgattacgtgttctttaat 14799997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 771 - 829
Target Start/End: Complemental strand, 8433040 - 8432982
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 829  Q
    |||||||||||||  ||||||| || |||||||||  |||||||| |||||||||||||    
T  8433040 tgaaattgaatgttatttccttcaattctgattctgatttgatgattacatgttcttta 8432982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 771 - 837
Target Start/End: Complemental strand, 23218280 - 23218214
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 837  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  23218280 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattg 23218214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 771 - 837
Target Start/End: Original strand, 45144031 - 45144097
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 837  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  45144031 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattg 45144097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 771 - 837
Target Start/End: Original strand, 45152800 - 45152866
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 837  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  45152800 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattg 45152866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 771 - 836
Target Start/End: Complemental strand, 13740312 - 13740247
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgatt 836  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| ||||||    
T  13740312 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgatt 13740247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 162; Significance: 6e-86; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 713 - 894
Target Start/End: Complemental strand, 52801659 - 52801478
Alignment:
Q  713 catcttctgtgttatctccatctctctccaaaaaccctcatttaggtaatgtgaaaattgaaattgaatgtattttcctttaaatctgattcttctttga 812  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  52801659 catcttctgtgttatctccatctctctccaaaaaccctaatttaggtaatgtgaaaattgaaattgaatgtatcttcctttaaatctgattcttctctga 52801560  T
Q  813 tgactacatgttctttaattgattgattgccatcagttttttcatctattgttgttaaacctagttgattacattaaaagaa 894  Q
    ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52801559 tgattatatgttctttaattgattgattgccatcagttttttcatctattgttgttaaacctagttgattacattaaaagaa 52801478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 771 - 836
Target Start/End: Complemental strand, 17481047 - 17480982
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgatt 836  Q
    |||||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||| |||||||    
T  17481047 tgaaattgaatgtattttccttcaaatatgattattctttgatgattacatgttctttgattgatt 17480982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 771 - 829
Target Start/End: Complemental strand, 29599311 - 29599253
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 829  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  29599311 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 29599253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 771 - 829
Target Start/End: Original strand, 324738 - 324796
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 829  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| || ||||||||||    
T  324738 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattagatgttcttta 324796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 771 - 829
Target Start/End: Original strand, 26014526 - 26014584
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 829  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||| ||||    
T  26014526 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttattta 26014584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 1e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 771 - 883
Target Start/End: Original strand, 23737941 - 23738048
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattgattgccatcagttttttcatctattgttgttaa 870  Q
    |||||||||||||| ||||||| ||||||||||||||||| |||| |||||||||||||     ||||||||||| || |||| ||||| ||||||||||    
T  23737941 tgaaattgaatgtaatttccttcaaatctgattcttctttaatgattacatgttcttta----gttgattgccatgag-ttttccatctgttgttgttaa 23738035  T
Q  871 acctagttgatta 883  Q
    |||||||||||||    
T  23738036 acctagttgatta 23738048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 771 - 883
Target Start/End: Complemental strand, 19209172 - 19209065
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattgattgccatcagttttttcatctattgttgttaa 870  Q
    |||||||||||||| ||||||| |||||||||||| |||| |||| |||||||||||||     ||||||||||| || |||| ||||| ||||||||||    
T  19209172 tgaaattgaatgtaatttccttcaaatctgattctgctttaatgattacatgttcttta----gttgattgccatgag-ttttccatctgttgttgttaa 19209078  T
Q  871 acctagttgatta 883  Q
    |||||||||||||    
T  19209077 acctagttgatta 19209065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 771 - 829
Target Start/End: Original strand, 32863703 - 32863761
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 829  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  32863703 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 32863761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 771 - 883
Target Start/End: Original strand, 43300233 - 43300340
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattgattgccatcagttttttcatctattgttgttaa 870  Q
    |||||||||||||| |||| || || ||||||| |||||| |||| |||||||||||   ||| |||||| | || || |||| ||||| ||||||||||    
T  43300233 tgaaattgaatgtaatttcgttcaattctgatttttctttaatgattacatgttctt---ttg-ttgatttcaatgag-ttttccatctgttgttgttaa 43300327  T
Q  871 acctagttgatta 883  Q
    |||||||||||||    
T  43300328 acctagttgatta 43300340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 827
Target Start/End: Complemental strand, 22273203 - 22273148
Alignment:
Q  772 gaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctt 827  Q
    |||||||||| |||||||||| |||| ||||| |||| |||||| |||||||||||    
T  22273203 gaaattgaatctattttccttcaaatatgattattctctgatgattacatgttctt 22273148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 771 - 829
Target Start/End: Original strand, 10572762 - 10572820
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 829  Q
    |||||||||||||| ||||||| || | |||||||  |||||||| |||||||||||||    
T  10572762 tgaaattgaatgtaatttccttcaattgtgattctgatttgatgattacatgttcttta 10572820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 771 - 836
Target Start/End: Original strand, 3174223 - 3174288
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgatt 836  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| ||||||    
T  3174223 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgatt 3174288  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 771 - 831
Target Start/End: Original strand, 42808726 - 42808786
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaat 831  Q
    |||||||||||||||||||||| |||| ||||| |||| |||||| |||||||||||||||    
T  42808726 tgaaattgaatgtattttccttcaaatatgattattctctgatgattacatgttctttaat 42808786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 771 - 829
Target Start/End: Complemental strand, 22432351 - 22432293
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 829  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  22432351 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 22432293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 771 - 829
Target Start/End: Complemental strand, 29182635 - 29182577
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 829  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  29182635 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 29182577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 771 - 824
Target Start/End: Original strand, 33360436 - 33360489
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgtt 824  Q
    |||||||||||||||||||||| |||| ||||| |||| |||||| ||||||||    
T  33360436 tgaaattgaatgtattttccttcaaatatgattattctctgatgattacatgtt 33360489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 771 - 837
Target Start/End: Original strand, 1668164 - 1668230
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 837  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  1668164 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattg 1668230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 771 - 837
Target Start/End: Original strand, 16658879 - 16658945
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 837  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  16658879 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattg 16658945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 771 - 837
Target Start/End: Complemental strand, 38521286 - 38521220
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 837  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  38521286 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattg 38521220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 776 - 829
Target Start/End: Complemental strand, 780417 - 780364
Alignment:
Q  776 ttgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 829  Q
    ||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  780417 ttgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 780364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 771 - 836
Target Start/End: Original strand, 22014894 - 22014959
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgatt 836  Q
    |||||||||||||| ||||||| || | ||||| || |||||||| ||||| ||||||| ||||||    
T  22014894 tgaaattgaatgtaatttccttcaattatgattattgtttgatgattacatattctttagttgatt 22014959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 772 - 827
Target Start/End: Original strand, 40923016 - 40923071
Alignment:
Q  772 gaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctt 827  Q
    ||||||||||||||||||||| |||| ||||| |||| |||||| |||||||||||    
T  40923016 gaaattgaatgtattttccttcaaatatgattattctctgatgattacatgttctt 40923071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 771 - 829
Target Start/End: Original strand, 9456473 - 9456531
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 829  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  9456473 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 9456531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 771 - 837
Target Start/End: Original strand, 21239494 - 21239560
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 837  Q
    |||||||||||||| ||||||| || ||||||| |  |||||||| ||||||||||||| |||||||    
T  21239494 tgaaattgaatgtaatttccttcaattctgattatgatttgatgattacatgttctttagttgattg 21239560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 827
Target Start/End: Original strand, 2733833 - 2733888
Alignment:
Q  772 gaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctt 827  Q
    |||||||||| |||||||||| |||| ||||| |||| |||||| |||||||||||    
T  2733833 gaaattgaatctattttccttcaaatatgattattctctgatgattacatgttctt 2733888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 771 - 837
Target Start/End: Original strand, 52893490 - 52893556
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 837  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  52893490 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattg 52893556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 771 - 829
Target Start/End: Complemental strand, 6472304 - 6472246
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 829  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  6472304 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 6472246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 771 - 829
Target Start/End: Original strand, 9371866 - 9371924
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 829  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  9371866 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 9371924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 771 - 829
Target Start/End: Complemental strand, 21358082 - 21358024
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 829  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  21358082 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 21358024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 771 - 836
Target Start/End: Original strand, 44660368 - 44660433
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgatt 836  Q
    |||||||||||||| |||| || || ||||||| |||||| |||| ||||||||||||| ||||||    
T  44660368 tgaaattgaatgtaatttcgttcaattctgatttttctttaatgattacatgttctttagttgatt 44660433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 771 - 829
Target Start/End: Complemental strand, 25697627 - 25697569
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 829  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  25697627 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 25697569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 771 - 837
Target Start/End: Complemental strand, 3935432 - 3935366
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 837  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  3935432 tgaaattgaatgtaatttccttcaattatgattataatttgatgattacatgttctttagttgattg 3935366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 771 - 831
Target Start/End: Original strand, 39670 - 39730
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaat 831  Q
    ||||||| |||||||||||||| |||| ||||| |||| |||||| ||| |||||||||||    
T  39670 tgaaattaaatgtattttccttcaaatatgattattctctgatgattacgtgttctttaat 39730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 827
Target Start/End: Original strand, 7171087 - 7171142
Alignment:
Q  772 gaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctt 827  Q
    |||||||||| |||||||||| |||| ||||| |||| |||||| |||||||||||    
T  7171087 gaaattgaatctattttccttcaaatatgattattctctgatgattacatgttctt 7171142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 776 - 829
Target Start/End: Original strand, 32397297 - 32397350
Alignment:
Q  776 ttgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 829  Q
    ||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  32397297 ttgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 32397350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 771 - 836
Target Start/End: Complemental strand, 11229 - 11164
Alignment:
Q  771 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgatt 836  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| ||||||    
T  11229 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgatt 11164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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