View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2838_low_10 (Length: 303)
Name: NF2838_low_10
Description: NF2838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2838_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 36289830 - 36290101
Alignment:
| Q |
20 |
cttcacttagacgggagctctataaataatgcagaactttcactcttcaattttagtagcattataattgcaacaaacaatttctcagaagaaaacaagc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36289830 |
cttcacttagacgggagctctataaataatgcagaactttcactcttcaattttagtagcattataattgcaacaaacaatttctcagaagaaaacaagc |
36289929 |
T |
|
| Q |
120 |
ttggacaagggggatttggtcctgtctacaaggtaaacatgtagctgttaaacttacctttctgtaatatgttaaaatatatatttcttcccaaatgtaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36289930 |
ttggacaagggggatttggtcctgtctacaaggtaaacatgtaactgttaaacttacctttctgtaatatgttaaaatatatatttcttcccaaatgtaa |
36290029 |
T |
|
| Q |
220 |
cactcatttttaatttggtcctgattcaaaatgtaattatattttcagattattatggtcaatgtatctgtg |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36290030 |
cactcatttttaatttggtcctgattcaaaatgtaattatattttcagattattatggtcaatgtatctgtg |
36290101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 21935833 - 21935876
Alignment:
| Q |
112 |
aaacaagcttggacaagggggatttggtcctgtctacaaggtaa |
155 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
21935833 |
aaacaagcttggacaaggtgggtttggtcctgtctacaaggtaa |
21935876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University