View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2838_low_11 (Length: 275)

Name: NF2838_low_11
Description: NF2838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2838_low_11
NF2838_low_11
[»] chr4 (48 HSPs)
chr4 (68-275)||(56241880-56242088)
chr4 (139-275)||(13183095-13183232)
chr4 (140-275)||(49136427-49136563)
chr4 (139-275)||(51922843-51922981)
chr4 (135-246)||(55638861-55638973)
chr4 (163-274)||(30887199-30887310)
chr4 (90-275)||(9893562-9893752)
chr4 (163-275)||(14564191-14564303)
chr4 (171-275)||(29149352-29149456)
chr4 (138-275)||(39636688-39636826)
chr4 (135-275)||(4954096-4954237)
chr4 (151-275)||(6505117-6505242)
chr4 (135-275)||(43772168-43772309)
chr4 (153-275)||(26651893-26652015)
chr4 (135-275)||(42944943-42945084)
chr4 (135-246)||(15603260-15603372)
chr4 (149-275)||(16566219-16566346)
chr4 (90-266)||(9889388-9889569)
chr4 (164-267)||(43781571-43781674)
chr4 (135-267)||(30842032-30842165)
chr4 (135-267)||(48407750-48407883)
chr4 (153-275)||(46830114-46830237)
chr4 (142-275)||(19592276-19592410)
chr4 (153-274)||(54735696-54735818)
chr4 (170-275)||(38305947-38306052)
chr4 (167-275)||(6138665-6138772)
chr4 (174-267)||(26426167-26426260)
chr4 (135-275)||(49519630-49519771)
chr4 (163-275)||(2175192-2175304)
chr4 (163-243)||(14072432-14072512)
chr4 (166-274)||(14075947-14076055)
chr4 (167-275)||(48550472-48550580)
chr4 (164-267)||(32238111-32238214)
chr4 (173-243)||(28986960-28987030)
chr4 (170-275)||(14054787-14054892)
chr4 (137-268)||(38693952-38694082)
chr4 (133-165)||(46830251-46830283)
chr4 (239-274)||(2171865-2171900)
chr4 (164-243)||(54152975-54153054)
chr4 (169-275)||(13167460-13167566)
chr4 (172-246)||(31520444-31520518)
chr4 (229-275)||(46926043-46926089)
chr4 (236-274)||(54487266-54487304)
chr4 (135-219)||(45780923-45781008)
chr4 (190-275)||(54488561-54488646)
chr4 (238-271)||(55927747-55927780)
chr4 (239-271)||(8604599-8604631)
chr4 (149-275)||(15619531-15619655)
[»] chr3 (34 HSPs)
chr3 (68-275)||(35930587-35930794)
chr3 (88-275)||(31084073-31084263)
chr3 (139-275)||(10334057-10334194)
chr3 (135-275)||(15511421-15511561)
chr3 (163-274)||(53179793-53179903)
chr3 (135-275)||(20813061-20813202)
chr3 (140-275)||(44224682-44224818)
chr3 (135-275)||(52966854-52966995)
chr3 (88-243)||(48189518-48189670)
chr3 (136-274)||(10853313-10853456)
chr3 (171-275)||(26519616-26519720)
chr3 (153-274)||(3348176-3348298)
chr3 (118-239)||(14959617-14959739)
chr3 (135-267)||(42318245-42318378)
chr3 (163-275)||(38172352-38172464)
chr3 (142-274)||(16246140-16246273)
chr3 (139-275)||(23207113-23207248)
chr3 (135-267)||(38125494-38125627)
chr3 (163-275)||(31618932-31619044)
chr3 (163-243)||(35425278-35425358)
chr3 (88-267)||(53074766-53074951)
chr3 (149-275)||(23496253-23496373)
chr3 (135-275)||(25847948-25848088)
chr3 (149-246)||(22736910-22737008)
chr3 (153-274)||(32357444-32357566)
chr3 (170-274)||(45423814-45423918)
chr3 (164-267)||(44939468-44939570)
chr3 (177-243)||(30811608-30811674)
chr3 (138-275)||(38340724-38340861)
chr3 (133-165)||(3348130-3348162)
chr3 (186-274)||(49526715-49526803)
chr3 (164-243)||(8424806-8424885)
chr3 (235-267)||(5406976-5407008)
chr3 (238-266)||(40147832-40147860)
[»] chr6 (16 HSPs)
chr6 (87-275)||(33899050-33899242)
chr6 (163-275)||(16442395-16442507)
chr6 (149-267)||(13739135-13739254)
chr6 (172-275)||(29409296-29409399)
chr6 (135-275)||(10826006-10826147)
chr6 (149-275)||(16548068-16548195)
chr6 (164-267)||(13744651-13744754)
chr6 (151-267)||(31132395-31132512)
chr6 (164-267)||(6208115-6208218)
chr6 (149-220)||(17830098-17830169)
chr6 (149-274)||(21254924-21255049)
chr6 (238-271)||(4910983-4911016)
chr6 (233-274)||(26405580-26405621)
chr6 (238-271)||(34620961-34620994)
chr6 (238-271)||(34748398-34748431)
chr6 (238-274)||(1499975-1500011)
[»] chr8 (34 HSPs)
chr8 (68-275)||(40742340-40742545)
chr8 (122-273)||(26125481-26125634)
chr8 (68-265)||(30085681-30085881)
chr8 (139-275)||(28425517-28425654)
chr8 (151-267)||(36114093-36114210)
chr8 (151-275)||(40742063-40742188)
chr8 (140-275)||(6399153-6399289)
chr8 (149-275)||(43550828-43550955)
chr8 (153-274)||(38152220-38152342)
chr8 (135-275)||(3467456-3467597)
chr8 (163-275)||(4941826-4941938)
chr8 (177-275)||(42148971-42149069)
chr8 (135-275)||(34342898-34343037)
chr8 (163-275)||(440234-440346)
chr8 (187-275)||(3097251-3097339)
chr8 (163-267)||(25698012-25698116)
chr8 (151-266)||(27649685-27649801)
chr8 (135-246)||(41981080-41981192)
chr8 (172-275)||(29023200-29023303)
chr8 (149-267)||(44926778-44926897)
chr8 (170-274)||(3619114-3619218)
chr8 (173-267)||(8124933-8125027)
chr8 (197-267)||(24897640-24897710)
chr8 (163-264)||(16915013-16915114)
chr8 (163-275)||(22936838-22936950)
chr8 (170-275)||(31246360-31246465)
chr8 (186-275)||(33627079-33627168)
chr8 (186-275)||(41289103-41289192)
chr8 (170-274)||(22552786-22552890)
chr8 (135-220)||(26243014-26243100)
chr8 (198-275)||(42143409-42143486)
chr8 (187-267)||(45147303-45147383)
chr8 (189-273)||(11126494-11126578)
chr8 (85-113)||(40741938-40741966)
[»] chr7 (35 HSPs)
chr7 (90-275)||(3375377-3375567)
chr7 (121-267)||(9456023-9456174)
chr7 (135-275)||(3622492-3622633)
chr7 (135-275)||(34366014-34366154)
chr7 (143-246)||(12632144-12632248)
chr7 (163-275)||(3342755-3342867)
chr7 (163-275)||(37562535-37562647)
chr7 (139-275)||(39391169-39391306)
chr7 (170-274)||(40903200-40903304)
chr7 (144-275)||(43737971-43738103)
chr7 (163-275)||(44967431-44967543)
chr7 (149-275)||(38230018-38230145)
chr7 (155-274)||(34010994-34011115)
chr7 (135-275)||(48459646-48459787)
chr7 (135-274)||(42740328-42740468)
chr7 (135-242)||(47301622-47301730)
chr7 (142-275)||(47021862-47021996)
chr7 (151-267)||(19095889-19096005)
chr7 (175-267)||(48134557-48134649)
chr7 (153-275)||(386513-386635)
chr7 (171-274)||(1766398-1766501)
chr7 (149-275)||(10371990-10372116)
chr7 (151-267)||(34010292-34010409)
chr7 (148-275)||(3750636-3750763)
chr7 (149-275)||(37639380-37639507)
chr7 (163-275)||(47217573-47217685)
chr7 (160-274)||(36920211-36920325)
chr7 (186-275)||(42752223-42752312)
chr7 (179-246)||(43631756-43631823)
chr7 (226-275)||(32205953-32206002)
chr7 (170-275)||(39634197-39634302)
chr7 (238-271)||(40561735-40561768)
chr7 (170-274)||(2839263-2839367)
chr7 (169-221)||(11341978-11342030)
chr7 (170-274)||(46285373-46285477)
[»] chr1 (32 HSPs)
chr1 (88-274)||(5410529-5410718)
chr1 (134-275)||(4369848-4369990)
chr1 (135-275)||(13055937-13056077)
chr1 (163-274)||(12468181-12468291)
chr1 (153-275)||(42850265-42850388)
chr1 (151-267)||(12247375-12247492)
chr1 (135-275)||(50977386-50977526)
chr1 (88-243)||(10470486-10470638)
chr1 (135-275)||(7826400-7826541)
chr1 (151-267)||(35536027-35536144)
chr1 (139-275)||(40229516-40229653)
chr1 (149-275)||(20800323-20800450)
chr1 (190-274)||(25061221-25061305)
chr1 (163-275)||(31223342-31223454)
chr1 (149-275)||(35569248-35569375)
chr1 (163-267)||(43728931-43729035)
chr1 (170-275)||(15884201-15884307)
chr1 (153-240)||(31933684-31933772)
chr1 (164-243)||(6464577-6464656)
chr1 (153-267)||(11023383-11023498)
chr1 (164-243)||(45710018-45710097)
chr1 (135-220)||(11051411-11051497)
chr1 (135-275)||(48510847-48510988)
chr1 (133-275)||(36205128-36205271)
chr1 (173-267)||(6166088-6166182)
chr1 (149-274)||(23628752-23628877)
chr1 (163-243)||(25229975-25230055)
chr1 (133-165)||(31933638-31933670)
chr1 (133-165)||(42850402-42850434)
chr1 (171-274)||(43730091-43730194)
chr1 (187-275)||(1199819-1199907)
chr1 (177-229)||(13931605-13931657)
[»] scaffold0369 (1 HSPs)
scaffold0369 (163-275)||(8393-8505)
[»] chr2 (36 HSPs)
chr2 (149-267)||(7472724-7472843)
chr2 (171-275)||(2213467-2213571)
chr2 (163-275)||(7296108-7296220)
chr2 (170-274)||(18511062-18511166)
chr2 (172-275)||(28127330-28127433)
chr2 (88-241)||(8170194-8170344)
chr2 (121-275)||(28641550-28641707)
chr2 (151-274)||(7295392-7295514)
chr2 (139-275)||(36548128-36548264)
chr2 (167-275)||(9988544-9988652)
chr2 (146-275)||(25940284-25940414)
chr2 (135-275)||(26207972-26208113)
chr2 (85-203)||(2212690-2212814)
chr2 (149-267)||(5916292-5916411)
chr2 (149-267)||(36312215-36312334)
chr2 (172-267)||(39141520-39141615)
chr2 (172-275)||(44619104-44619207)
chr2 (135-220)||(39106766-39106852)
chr2 (172-275)||(2215216-2215317)
chr2 (170-274)||(16467046-16467150)
chr2 (172-268)||(23358220-23358316)
chr2 (186-246)||(31562756-31562816)
chr2 (164-243)||(14821117-14821196)
chr2 (153-267)||(32501928-32502043)
chr2 (186-274)||(3853876-3853964)
chr2 (146-274)||(25747925-25748053)
chr2 (163-275)||(28261247-28261359)
chr2 (170-274)||(43858256-43858360)
chr2 (171-274)||(3552890-3552993)
chr2 (153-199)||(45714767-45714814)
chr2 (121-230)||(42516063-42516177)
chr2 (190-274)||(3602503-3602587)
chr2 (191-275)||(1945082-1945166)
chr2 (190-275)||(27911386-27911471)
chr2 (223-275)||(2213660-2213712)
chr2 (223-275)||(31224693-31224745)
[»] chr5 (29 HSPs)
chr5 (163-275)||(40885168-40885281)
chr5 (171-275)||(3667820-3667924)
chr5 (196-275)||(39988009-39988088)
chr5 (190-274)||(8049094-8049178)
chr5 (151-274)||(9275527-9275651)
chr5 (149-275)||(22482132-22482259)
chr5 (171-275)||(35760155-35760259)
chr5 (149-267)||(32454480-32454599)
chr5 (163-274)||(40495401-40495511)
chr5 (172-275)||(41740635-41740738)
chr5 (142-275)||(41834828-41834962)
chr5 (190-275)||(7385974-7386059)
chr5 (151-267)||(13253132-13253249)
chr5 (135-275)||(24045760-24045900)
chr5 (88-240)||(7714818-7714975)
chr5 (139-273)||(28869547-28869681)
chr5 (158-275)||(4292102-4292219)
chr5 (163-275)||(16158507-16158619)
chr5 (174-267)||(40791119-40791212)
chr5 (174-267)||(42146277-42146370)
chr5 (149-274)||(7178722-7178847)
chr5 (164-243)||(2430370-2430449)
chr5 (135-275)||(32030645-32030784)
chr5 (163-244)||(3060296-3060376)
chr5 (163-275)||(27021086-27021198)
chr5 (191-275)||(5710428-5710511)
chr5 (171-246)||(2694831-2694906)
chr5 (85-113)||(9275748-9275776)
chr5 (187-275)||(10058056-10058144)
[»] scaffold0005 (1 HSPs)
scaffold0005 (163-275)||(253072-253184)
[»] scaffold0217 (1 HSPs)
scaffold0217 (151-275)||(2072-2197)
[»] scaffold0041 (1 HSPs)
scaffold0041 (170-274)||(46714-46818)
[»] scaffold0381 (1 HSPs)
scaffold0381 (90-266)||(8977-9158)
[»] scaffold0020 (1 HSPs)
scaffold0020 (171-274)||(138554-138657)
[»] scaffold0394 (1 HSPs)
scaffold0394 (149-210)||(5941-6002)
[»] scaffold0983 (1 HSPs)
scaffold0983 (163-275)||(2313-2425)
[»] scaffold0007 (1 HSPs)
scaffold0007 (164-243)||(29199-29278)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 68 - 275
Target Start/End: Complemental strand, 56242088 - 56241880
Alignment:
Q  68 gtactattaataatgattaatgaagcaataaaaatccaaatatgataactttgaaataattatataaaatgagatatttaattttaaatacaattaaa-g 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  56242088 gtactattaataatgattaatgaagcaataaaaatccaaatatgataactttgaaataattatataaaatgagatatttaattttaaatacaattaaaag 56241989  T
Q  167 gatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacata 266  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  56241988 gatattttggtcattatacattcaaaatcaattttgatttaaatcatctaaacattatcaactcataagaatcacttttacattaatgtatccaaacata 56241889  T
Q  267 aatcaattc 275  Q
    |||||||||    
T  56241888 aatcaattc 56241880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 139 - 275
Target Start/End: Complemental strand, 13183232 - 13183095
Alignment:
Q  139 agatatttaattttaaatacaatt-aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaa 237  Q
    ||||||||| |||||||||||||| |||||||| |||||||||| || ||||||||||||||||||||||||| ||||||| |  ||||||| |||||||    
T  13183232 agatatttacttttaaatacaatttaaaggatagtttggtcattttacattcaaaatcaattttgatttaaattatccaaaaaacatcaacttataaaaa 13183133  T
Q  238 tcacttttacattaatgtatccaaacataaatcaattc 275  Q
    ||| ||||| || | |||||||||||||||||||||||    
T  13183132 tcatttttaaataagtgtatccaaacataaatcaattc 13183095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 140 - 275
Target Start/End: Original strand, 49136427 - 49136563
Alignment:
Q  140 gatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaat 238  Q
    |||||||| ||| ||| ||||||||| ||||| |||||||||| || |||||||||||||||||||| |||| || ||||||  |||||||||||| |||    
T  49136427 gatatttagtttcaaaaacaattaaaaggataatttggtcattgtacattcaaaatcaattttgattaaaattattcaaacaacatcaactcataagaat 49136526  T
Q  239 cacttttacattaatgtatccaaacataaatcaattc 275  Q
    ||||||||  | | |||||||||||||||||||||||    
T  49136527 cacttttaagtgagtgtatccaaacataaatcaattc 49136563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 139 - 275
Target Start/End: Original strand, 51922843 - 51922981
Alignment:
Q  139 agatatttaattttaaatacaattaaa--ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaa 236  Q
    ||||||||| |||||||||||| ||||  ||||| ||||||||||||| |||||||||||||||||||| |||  |||||||||  |||||||||||| |    
T  51922843 agatatttacttttaaatacaactaaaaaggatagtttggtcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataaga 51922942  T
Q  237 atcacttttacattaatgtatccaaacataaatcaattc 275  Q
    || |||||||    | |||||||||||||||||||||||    
T  51922943 attacttttagtaaagtgtatccaaacataaatcaattc 51922981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 55638973 - 55638861
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaag-gatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    ||||| ||||||| |||||||||||||||||  |||| ||||||||||| |||||||||||||||||||||| | || ||||||||| ||||||||||||    
T  55638973 aatgatatatttacttttaaatacaattaaaatgatagtttggtcattacatattcaaaatcaattttgattcatattatccaaacaatatcaactcata 55638874  T
Q  234 aaaatcactttta 246  Q
    | |||| ||||||    
T  55638873 agaatccctttta 55638861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 274
Target Start/End: Complemental strand, 30887310 - 30887199
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    ||||| || ||||||||||| | |||||||||||||||||||  ||| ||||||||||| || ||||||||| ||||||||||| |||  ||||||||||    
T  30887310 aaaggttaatttggtcattacacattcaaaatcaattttgatacaaaccatccaaacatcattaactcataagaatcacttttatattggtgtatccaaa 30887211  T
Q  263 cataaatcaatt 274  Q
    ||||||||||||    
T  30887210 cataaatcaatt 30887199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 90 - 275
Target Start/End: Original strand, 9893562 - 9893752
Alignment:
Q  90 aagcaataaaaatccaaatatgataactttgaaataattatataaaa------tgagatatttaattttaaatacaattaaaggatattttggtcattat 183  Q
    ||||||||||||| |||||||||||| ||  |||||||||| |||||      ||||||||||| ||||||  ||| | |||||||| |||  |||||||    
T  9893562 aagcaataaaaattcaaatatgataagttc-aaataattatctaaaatgaaaatgagatatttatttttaataacattaaaaggataatttaatcattat 9893660  T
Q  184 atattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    | |||||||||||||||| |||||||  |||||||||  |||||||||||| ||||||||| |  |   |||||||||||||| ||||||||    
T  9893661 acattcaaaatcaattttaatttaaactatccaaacaacatcaactcataagaatcactttcaagtgggtgtatccaaacatatatcaattc 9893752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 163 - 275
Target Start/End: Complemental strand, 14564303 - 14564191
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    ||||||||  ||||||||||||||||||||||||||||||||| ||   |||||||||  || ||||||||| |||||||||||  | || |||||||||    
T  14564303 aaaggataagttggtcattatatattcaaaatcaattttgattcaatctatccaaacaacattaactcataagaatcacttttaactgaaggtatccaaa 14564204  T
Q  263 cataaatcaattc 275  Q
    |||||||||||||    
T  14564203 cataaatcaattc 14564191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 171 - 275
Target Start/End: Complemental strand, 29149456 - 29149352
Alignment:
Q  171 ttttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatc 270  Q
    ||||||||||| || ||| |||||||||||||||| |||  ||||||||| |||||||| ||||||||||||||||  | | ||||||||||||||||||    
T  29149456 ttttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatc 29149357  T
Q  271 aattc 275  Q
    |||||    
T  29149356 aattc 29149352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 275
Target Start/End: Original strand, 39636688 - 39636826
Alignment:
Q  138 gagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaa 236  Q
    |||||||||| || |||||| ||||||| ||||||||||||| ||| | ||| |||||||||||||||| | |  |||||||||  |||||||| ||| |    
T  39636688 gagatatttacttgtaaatataattaaaaggatattttggtcgttacacatttaaaatcaattttgattcatactatccaaacaacatcaactcgtaaga 39636787  T
Q  237 atcacttttacattaatgtatccaaacataaatcaattc 275  Q
    ||||||||||  | | |||||||||||||||||||||||    
T  39636788 atcacttttaagtaagtgtatccaaacataaatcaattc 39636826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 275
Target Start/End: Complemental strand, 4954237 - 4954096
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    |||||||||| |||||||||||||||||||| ||||| || |||||||| | ||| ||||| |||||||||| ||   |||||||||  |||||||||||    
T  4954237 aatgagatatataattttaaatacaattaaaaggataattaggtcattacacatttaaaattaattttgattcaacctatccaaacaacatcaactcata 4954138  T
Q  234 aaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    | |||||||||||  | |  ||| ||||||||||||||||||    
T  4954137 agaatcacttttaagtgagggtacccaaacataaatcaattc 4954096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 151 - 275
Target Start/End: Original strand, 6505117 - 6505242
Alignment:
Q  151 ttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacat 249  Q
    |||||| |||||||| ||||| ||  |||||||||||||||||||||||||||| |||||  |||||||||  ||||| |||| | ||||||||||| ||    
T  6505117 ttaaatgcaattaaaaggataattcagtcattatatattcaaaatcaattttgacttaaactatccaaacaacatcaagtcatgataatcacttttatat 6505216  T
Q  250 taatgtatccaaacataaatcaattc 275  Q
     | |||||| ||||||||||||||||    
T  6505217 gagtgtatctaaacataaatcaattc 6505242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 275
Target Start/End: Complemental strand, 43772309 - 43772168
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    ||||||||||||| ||||||||| ||||||| ||||| ||||||||||| | | | |||||||||||||||| | || |||||||||  |||||||| ||    
T  43772309 aatgagatatttacttttaaatataattaaaaggatagtttggtcattacacacttaaaatcaattttgattcatattatccaaacaacatcaactcgta 43772210  T
Q  234 aaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    | |||||||| || |  | |||||||||||||||||| ||||    
T  43772209 agaatcacttctaaaaaagtgtatccaaacataaatcgattc 43772168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 153 - 275
Target Start/End: Complemental strand, 26652015 - 26651893
Alignment:
Q  153 aaatacaattaaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaa 252  Q
    ||||| |||||||||||| ||||||||||||| |||||||||||||||||||| |||  ||||||| |  ||| |||||||| ||| |||||||    |     
T  26652015 aaatataattaaaggatagtttggtcattatacattcaaaatcaattttgattcaaactatccaaataacatcgactcataagaattacttttagtaaag 26651916  T
Q  253 tgtatccaaacataaatcaattc 275  Q
    |||||| ||||||||||||||||    
T  26651915 tgtatctaaacataaatcaattc 26651893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 275
Target Start/End: Complemental strand, 42945084 - 42944943
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    |||| |||||||| ||||||||| ||||||| ||||| ||||||||||||| ||| |||||||||||||||  | |  |||||||||  |||||| ||||    
T  42945084 aatgggatatttacttttaaatataattaaaaggatagtttggtcattatacatttaaaatcaattttgatacatactatccaaacaacatcaacacata 42944985  T
Q  234 aaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    | |||||||||||  | | | |||| ||||||||||||||||    
T  42944984 agaatcacttttaagtaagtatatctaaacataaatcaattc 42944943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 135 - 246
Target Start/End: Original strand, 15603260 - 15603372
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    ||||||||||||| ||||||| ||||| ||| ||||| |||| ||||| |  |||||||||||||||||| |||||| |||||||||  |||||||||||    
T  15603260 aatgagatatttagttttaaaaacaatcaaaaggataatttgatcattgtgcattcaaaatcaattttgacttaaattatccaaacaacatcaactcata 15603359  T
Q  234 aaaatcactttta 246  Q
    | ||||| |||||    
T  15603360 agaatcattttta 15603372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 275
Target Start/End: Original strand, 16566219 - 16566346
Alignment:
Q  149 ttttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttac 247  Q
    ||||||||||||||||| ||||| ||| ||||||| | |||||||||||||||||||| |||  |||||||||  |||||| || |  |||||||||||     
T  16566219 ttttaaatacaattaaaaggatagtttagtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcactttta- 16566317  T
Q  248 attaa-tgtatccaaacataaatcaattc 275  Q
    || || |||||||||||||||||||||||    
T  16566318 ataaagtgtatccaaacataaatcaattc 16566346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 266
Target Start/End: Complemental strand, 9889569 - 9889388
Alignment:
Q  90 aagcaataaaaatccaaatatgataactttgaaataattatataaaatga------gatatttaattttaaatacaattaaaggatattttggtcattat 183  Q
    ||||||||||||| |||||||||||| ||  |||||||||| ||||||||      ||||||||  |||||  ||| | |||||||| ||| ||||||||    
T  9889569 aagcaataaaaattcaaatatgataagttc-aaataattatctaaaatgaaaatgagatatttatatttaataacattaaaaggataatttagtcattat 9889471  T
Q  184 atattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacata 266  Q
    | |||||||||||||||| ||| |||  |||||||||  ||| |||||||| ||||||||| |  | | ||||||||||||||    
T  9889470 acattcaaaatcaattttaattcaaactatccaaacaacatctactcataagaatcactttcaagtgagtgtatccaaacata 9889388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 267
Target Start/End: Complemental strand, 43781674 - 43781571
Alignment:
Q  164 aaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaac 263  Q
    ||||||| |||||||||| || ||||||||| |||||||||| |||  |||||||||  |||||||||||| ||||||||||| |  | |||||||||||    
T  43781674 aaggataatttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaacaagtgtatccaaac 43781575  T
Q  264 ataa 267  Q
    ||||    
T  43781574 ataa 43781571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 267
Target Start/End: Original strand, 30842032 - 30842165
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    |||| ||| |||| ||||||||||||||||| ||||| ||| |||||| || |||||||||||||||||||| |||  |||||||    |||||||||||    
T  30842032 aatgggatgtttagttttaaatacaattaaaaggataattttgtcattttacattcaaaatcaattttgattcaaactatccaaatgaaatcaactcata 30842131  T
Q  234 aaaatcacttttacattaatgtatccaaacataa 267  Q
    | ||||||||| | |  | |||||||||||||||    
T  30842132 agaatcactttcaaacaagtgtatccaaacataa 30842165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 267
Target Start/End: Complemental strand, 48407883 - 48407750
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    |||| ||| |||| ||||||||||||||||| ||||| ||| |||||| || |||||||||||||||||||| |||  |||||||    |||||||||||    
T  48407883 aatgggatgtttagttttaaatacaattaaaaggataattttgtcattttacattcaaaatcaattttgattcaaactatccaaatgaaatcaactcata 48407784  T
Q  234 aaaatcacttttacattaatgtatccaaacataa 267  Q
    | ||||||||| | |  | |||||||||||||||    
T  48407783 agaatcactttcaaacaagtgtatccaaacataa 48407750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 275
Target Start/End: Complemental strand, 46830237 - 46830114
Alignment:
Q  153 aaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacatta 251  Q
    ||||||||||||| ||||| |||||||| || | ||| ||||||||||||||| || |  |||||||||  |||||||||||| ||||| |||||    |    
T  46830237 aaatacaattaaaaggataatttggtcaatacacatttaaaatcaattttgatgtagaatatccaaacaacatcaactcataagaatcaattttaagaaa 46830138  T
Q  252 atgtatccaaacataaatcaattc 275  Q
     |||||||||||||||||||||||    
T  46830137 gtgtatccaaacataaatcaattc 46830114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 275
Target Start/End: Complemental strand, 19592410 - 19592276
Alignment:
Q  142 tatttaattttaaatacaattaaagga-tattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatca 240  Q
    |||||| || |||||||||||||| || || |||||||||| || |||||||||||||||| ||| |||  |||||||||   |||| || ||| |||||    
T  19592410 tatttacttctaaatacaattaaaagaataatttggtcattgtacattcaaaatcaattttcattcaaactatccaaacaacgtcaattcgtaagaatca 19592311  T
Q  241 cttttacattaatgtatccaaacataaatcaattc 275  Q
    ||||||    | |||||||||||||||||||||||    
T  19592310 cttttagtaaagtgtatccaaacataaatcaattc 19592276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 274
Target Start/End: Complemental strand, 54735818 - 54735696
Alignment:
Q  153 aaatacaattaaagg-atattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacatta 251  Q
    ||||| ||||||||| ||| ||||||||||| | |||||| |||||||||||||||||  |  ||||||  |||||||||||| |||||||||||  |      
T  54735818 aaatataattaaagggatactttggtcattacacattcaagatcaattttgatttaaaatactcaaacaacatcaactcataagaatcacttttaagtat 54735719  T
Q  252 atgtatccaaacataaatcaatt 274  Q
    |||| |||||||||||| |||||    
T  54735718 atgtttccaaacataaaccaatt 54735696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 275
Target Start/End: Original strand, 38305947 - 38306052
Alignment:
Q  170 attttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaat 269  Q
    |||||||| |||||  |||||||||||||||||||  || | |||||||||  || || | |||| |||||||||| | |||| ||||||||||||||||    
T  38305947 attttggtaattatgcattcaaaatcaattttgatccaagttatccaaacaacatgaatttataagaatcacttttgctttaaggtatccaaacataaat 38306046  T
Q  270 caattc 275  Q
    ||||||    
T  38306047 caattc 38306052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 6138772 - 6138665
Alignment:
Q  167 gatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacata 266  Q
    |||| ||||||||||| | ||||||| |||||||| ||| |||  |||||||||  |||||||||||  ||||| ||||| || | ||||||||||||||    
T  6138772 gatagtttggtcattacacattcaaa-tcaattttcattcaaactatccaaacaacatcaactcatatgaatcatttttaaataagtgtatccaaacata 6138674  T
Q  267 aatcaattc 275  Q
    |||||||||    
T  6138673 aatcaattc 6138665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 26426260 - 26426167
Alignment:
Q  174 tggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaa-tgtatccaaacataa 267  Q
    ||||||||||| ||||| |||||||||||||| ||   ||||||||| |||||||||| || ||||||||||| |||||  ||||||||||||||    
T  26426260 tggtcattatacattcacaatcaattttgattcaatgtatccaaacaatatcaactcaaaagaatcactttta-attaagcgtatccaaacataa 26426167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 275
Target Start/End: Original strand, 49519630 - 49519771
Alignment:
Q  135 aatgagatatttaattttaaatacaatt-aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    ||||||||||||| ||||||||| |||| ||| |||| ||||||||||| | | | |||||||||||| ||  | |  ||||||||| |||||| |||||    
T  49519630 aatgagatatttacttttaaatataattaaaatgatagtttggtcattacacacttaaaatcaattttaatacatactatccaaacaatatcaattcata 49519729  T
Q  234 aaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    | ||||| |||||    | ||||||||||||||||| |||||    
T  49519730 agaatcatttttaagcaagtgtatccaaacataaataaattc 49519771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 275
Target Start/End: Complemental strand, 2175304 - 2175192
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    |||||||| ||| |||||| ||  ||||||||||||||| ||| |||  |||||||||  |||||| ||| |||||||||||||    | || |||||||    
T  2175304 aaaggataatttagtcattgtacgttcaaaatcaattttaattcaaactatccaaacaacatcaacccatcaaaatcacttttaagcgagtgcatccaaa 2175205  T
Q  263 cataaatcaattc 275  Q
    |||||||||||||    
T  2175204 cataaatcaattc 2175192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 14072432 - 14072512
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcactt 243  Q
    |||||||| ||| ||||||| | |||||||||||||||||||| |||  |||||||||  |||||||||| | ||||||||    
T  14072432 aaaggataatttagtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaactcattagaatcactt 14072512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 274
Target Start/End: Original strand, 14075947 - 14076055
Alignment:
Q  166 ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacat 265  Q
    ||||| ||||||||||| | |||||| || ||||||||||||||  |  ||||||  ||||| |||||| |||||||||||  |  |||| |||||||||    
T  14075947 ggatactttggtcattacacattcaagattaattttgatttaaagtactcaaacaacatcaattcataagaatcacttttaagtatatgtttccaaacat 14076046  T
Q  266 aaatcaatt 274  Q
    |||||||||    
T  14076047 aaatcaatt 14076055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 48550580 - 48550472
Alignment:
Q  167 gatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacata 266  Q
    |||| |||| |||||| | ||| |||||||||||||||| |||  |||||||||  |||||||||||| |||||||| ||    | | ||||||||||||    
T  48550580 gatagtttgatcattacacatttaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttctattaaagtttatccaaacata 48550481  T
Q  267 aatcaattc 275  Q
    |||||||||    
T  48550480 aatcaattc 48550472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 267
Target Start/End: Complemental strand, 32238214 - 32238111
Alignment:
Q  164 aaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaac 263  Q
    ||||||| ||| ||||||| | ||||||||||| |||||||| |||  |||||||||  |||||||||||  |||||||| ||   || |||||||||||    
T  32238214 aaggataatttagtcattagacattcaaaatcagttttgattcaaactatccaaacaacatcaactcatatgaatcacttctaatatagtgtatccaaac 32238115  T
Q  264 ataa 267  Q
    ||||    
T  32238114 ataa 32238111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 28986960 - 28987030
Alignment:
Q  173 ttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcactt 243  Q
    ||||||||||   ||| |||||||||||||||| |||  |||||||||  |||||||||||||||||||||    
T  28986960 ttggtcattacccatttaaaatcaattttgattcaaactatccaaacaacatcaactcataaaaatcactt 28987030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 275
Target Start/End: Original strand, 14054787 - 14054892
Alignment:
Q  170 attttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaat 269  Q
    |||||||| |||| | || ||||||||||||| |||||||  || ||||||  |||||||   || ||||||||||| || | | |||||||||||||||    
T  14054787 attttggtaattagacatccaaaatcaattttaatttaaagtattcaaacaacatcaacttgaaataatcacttttatataagtttatccaaacataaat 14054886  T
Q  270 caattc 275  Q
    ||||||    
T  14054887 caattc 14054892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 268
Target Start/End: Original strand, 38693952 - 38694082
Alignment:
Q  137 tgagatatttaattttaaatacaattaaagg-atattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaa 235  Q
    |||||| |||| ||||| ||| ||||||| | ||| ||||||||||| ||  ||||||| ||||||||||||||| || ||| ||  |||||| |||||     
T  38693952 tgagatgtttagttttatatataattaaaagtataatttggtcattacat--tcaaaattaattttgatttaaattattcaagcaagatcaacccataag 38694049  T
Q  236 aatcacttttacattaatgtatccaaacataaa 268  Q
    |||||||||||    | ||||||||||||||||    
T  38694050 aatcacttttaagcgagtgtatccaaacataaa 38694082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 46830283 - 46830251
Alignment:
Q  133 aaaatgagatatttaattttaaatacaattaaa 165  Q
    |||||||||||||||||||||||||||||||||    
T  46830283 aaaatgagatatttaattttaaatacaattaaa 46830251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 274
Target Start/End: Original strand, 2171865 - 2171900
Alignment:
Q  239 cacttttacattaatgtatccaaacataaatcaatt 274  Q
    |||||||||| |||||||||||||||||||||||||    
T  2171865 cacttttacagtaatgtatccaaacataaatcaatt 2171900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 54152975 - 54153054
Alignment:
Q  164 aaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcactt 243  Q
    ||||||| ||| ||||||| | |||||||||||||||||||| |||  || ||||||  |||||||||| | ||||||||    
T  54152975 aaggataatttagtcattagacattcaaaatcaattttgattcaaactattcaaacaacatcaactcatgagaatcactt 54153054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 275
Target Start/End: Original strand, 13167460 - 13167566
Alignment:
Q  169 tattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaa 268  Q
    ||||||||| |||||  ||| |||| ||||||||||| ||   |||||||||| || ||  ||||| ||||||||||| ||   |||||||||| |||||    
T  13167460 tattttggtaattatgcatttaaaagcaattttgattcaatctatccaaacatcattaatacataagaatcacttttaaatgggtgtatccaaatataaa 13167559  T
Q  269 tcaattc 275  Q
    |||||||    
T  13167560 tcaattc 13167566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 31520518 - 31520444
Alignment:
Q  172 tttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcactttta 246  Q
    ||||||||||| | ||| |||||||||||| ||| |||  | ||||| |  ||||||||||||||||||||||||    
T  31520518 tttggtcattacacatttaaaatcaatttttattcaaactacccaaaaaacatcaactcataaaaatcactttta 31520444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 46926043 - 46926089
Alignment:
Q  229 tcataaaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    |||||||||||||||||| |  | |||||||||||||||||||||||    
T  46926043 tcataaaaatcacttttaaacgagtgtatccaaacataaatcaattc 46926089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 274
Target Start/End: Complemental strand, 54487304 - 54487266
Alignment:
Q  236 aatcacttttacattaatgtatccaaacataaatcaatt 274  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  54487304 aatcactttcacatcaatgtatccaaacataaatcaatt 54487266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 219
Target Start/End: Complemental strand, 45781008 - 45780923
Alignment:
Q  135 aatgagatatttaattttaaatacaatt-aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaac 219  Q
    ||||||||||||| |||| | || |||| |||| ||| ||||||||||  | ||  |||||||||||||||| |||||||||||||    
T  45781008 aatgagatatttagtttttagtataatttaaagaataatttggtcattgcacatctaaaatcaattttgattcaaatcatccaaac 45780923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 54488561 - 54488646
Alignment:
Q  190 aaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    |||||||||||||||  || | |||||||||  || || | |||| |||||||||| | |||| |||| |||||||||||||||||    
T  54488561 aaaatcaattttgatccaagttatccaaacaaaatgaatttataagaatcacttttgctttaaggtattcaaacataaatcaattc 54488646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 55927780 - 55927747
Alignment:
Q  238 tcacttttacattaatgtatccaaacataaatca 271  Q
    |||||||||||| |||||||||||||||||||||    
T  55927780 tcacttttacatgaatgtatccaaacataaatca 55927747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 8604631 - 8604599
Alignment:
Q  239 cacttttacattaatgtatccaaacataaatca 271  Q
    ||||||||||| |||||||||||||||||||||    
T  8604631 cacttttacatgaatgtatccaaacataaatca 8604599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 275
Target Start/End: Original strand, 15619531 - 15619655
Alignment:
Q  149 ttttaaatacaattaaag-gatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttac 247  Q
    |||||||||||||||||  |||| ||| ||||||| | |||||| |||| |||||||| |||  |||||||||  |||||| || |  |||||||| ||     
T  15619531 ttttaaatacaattaaaatgataatttagtcattacacattcaagatca-ttttgattcaaactatccaaacaacatcaacccacatgaatcacttatag 15619629  T
Q  248 attaatgtatccaaacataaatcaattc 275  Q
      ||||||||||||||||| ||||||||    
T  15619630 --taatgtatccaaacatacatcaattc 15619655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 68 - 275
Target Start/End: Original strand, 35930587 - 35930794
Alignment:
Q  68 gtactattaataatgattaatgaagcaataaaaatccaaatatgataactttgaaataattatataaaatgagatatttaattttaaatacaattaaag- 166  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||      
T  35930587 gtactattaataatgattaatgaagcaataaaaatctaaatatgataactt-gaaataattatataaaatgagatatttaattttaaatacaattaaaat 35930685  T
Q  167 gatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacata 266  Q
    |||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| ||||||| ||||||||| ||||    
T  35930686 gatattttggtcattacacattcaaaatcaattttgatttaaaccatccaaacattatcaactcataagaatgacttatacattagtgtatccaagcata 35930785  T
Q  267 aatcaattc 275  Q
    |||||||||    
T  35930786 aatcaattc 35930794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 88 - 275
Target Start/End: Original strand, 31084073 - 31084263
Alignment:
Q  88 tgaagcaataaaaatccaaatatgataactttgaaataattatataa----aatgagatatttaattttaaatacaattaaag-gatattttggtcatta 182  Q
    ||||||||||||||| ||  ||| |||| || |||||||||||||||    ||||||||||||| |||||||||||||||||  |||| |||||||||||    
T  31084073 tgaagcaataaaaattcatttataataagtt-gaaataattatataatgagaatgagatatttacttttaaatacaattaaaatgatagtttggtcatta 31084171  T
Q  183 tatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
     |||||||||||||||| ||||| |||  ||||||| | |||||| |||||| ||||||||||| |  | |||||||||||||||||||||||    
T  31084172 catattcaaaatcaattatgattcaaactatccaaataatatcaagtcataagaatcactttta-agaagtgtatccaaacataaatcaattc 31084263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 139 - 275
Target Start/End: Original strand, 10334057 - 10334194
Alignment:
Q  139 agatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaa 237  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||| |||  |||||||||   ||||||||||| ||    
T  10334057 agatatttacttttaaatacaattaaaaggatagtttggtcattataaattcaaaatcaattttgattcaaactatccaaacaacgtcaactcataagaa 10334156  T
Q  238 tcacttttacattaatgtatccaaacataaatcaattc 275  Q
    | |||||||    | |||||||||||||||||||||||    
T  10334157 ttacttttagtaaagtgtatccaaacataaatcaattc 10334194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 135 - 275
Target Start/End: Complemental strand, 15511561 - 15511421
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaagga-tattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    ||||||||||||||||||||| ||||||||| || || ||| |||||||   |||||||||||||||| ||| |||  ||||||||| ||||||||||||    
T  15511561 aatgagatatttaattttaaacacaattaaaagagtaatttcgtcattacgcattcaaaatcaatttttattcaaactatccaaacaatatcaactcata 15511462  T
Q  234 aaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    ||||||||||||| || |  ||||||||||||||||||||||    
T  15511461 aaaatcactttta-ataagcgtatccaaacataaatcaattc 15511421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 163 - 274
Target Start/End: Original strand, 53179793 - 53179903
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    |||||||| |||||||||| || ||||||||||||||||||||||||  |||||||||  |||||||||||||||||||||||| |  | ||||||||||    
T  53179793 aaaggataatttggtcattgtacattcaaaatcaattttgatttaaactatccaaaca-aatcaactcataaaaatcacttttaaaaaagtgtatccaaa 53179891  T
Q  263 cataaatcaatt 274  Q
    ||||||||||||    
T  53179892 cataaatcaatt 53179903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 135 - 275
Target Start/End: Original strand, 20813061 - 20813202
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    ||||||| ||||| ||||||||||||||||| ||||| ||| ||||||| | |||||||||||||||||||| |||  |||||||||  |||||||||||    
T  20813061 aatgagaaatttacttttaaatacaattaaaaggatagtttagtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaactcata 20813160  T
Q  234 aaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    | ||||||||||  || | | |||||||||| ||||||||||    
T  20813161 agaatcacttttgaataagtatatccaaacaaaaatcaattc 20813202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 275
Target Start/End: Original strand, 44224682 - 44224818
Alignment:
Q  140 gatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaat 238  Q
    |||||||| ||| ||| ||||||||| ||||| ||||||||||  | |||||||||||||||||| | |||| |||||||||  |||||||||||| |||    
T  44224682 gatatttagtttcaaaaacaattaaaaggataatttggtcattgcacattcaaaatcaattttgactaaaattatccaaacaacatcaactcataagaat 44224781  T
Q  239 cacttttacattaatgtatccaaacataaatcaattc 275  Q
    ||||||||  | | |||||||||||||||||||||||    
T  44224782 cacttttaagtgagtgtatccaaacataaatcaattc 44224818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 275
Target Start/End: Complemental strand, 52966995 - 52966854
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    |||||||||| |||||||||||||||||||| ||||| ||||||||||| | ||| |||||||||||||||| ||   ||| |||||  |||||||||||    
T  52966995 aatgagatatataattttaaatacaattaaaaggataatttggtcattacacatttaaaatcaattttgattcaacctatctaaacaacatcaactcata 52966896  T
Q  234 aaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    | |||||||||||  | |  ||| ||||||||||||||||||    
T  52966895 agaatcacttttaagtgagggtacccaaacataaatcaattc 52966854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 88 - 243
Target Start/End: Complemental strand, 48189670 - 48189518
Alignment:
Q  88 tgaagcaataaaaatccaaatatgataactttgaaataattatataaaatgagatatttaattttaaatacaattaaaggatattttggtcattatatat 187  Q
    ||||||||||||||| |||||||||||| ||  |||||||||| ||||||||  |||||| ||||||  ||| |  ||||||| ||| ||||||||| ||    
T  48189670 tgaagcaataaaaattcaaatatgataagttc-aaataattatctaaaatga--tatttatttttaataacattagaaggataatttagtcattatacat 48189574  T
Q  188 tcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcactt 243  Q
    |||||||||||||| ||| |||  |||||||||  |||||||||||| ||||||||    
T  48189573 tcaaaatcaattttaattcaaactatccaaacaacatcaactcataagaatcactt 48189518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 136 - 274
Target Start/End: Complemental strand, 10853456 - 10853313
Alignment:
Q  136 atgagatatttaattttaaatacaatt-----aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactc 230  Q
    ||||||| |||||||||| ||||||||     |||||||| |||||||| || | |||||||||||||||||||| |||  |||||||||  ||||||||    
T  10853456 atgagatgtttaattttatatacaattgattgaaaggataatttggtcaatacacattcaaaatcaattttgattcaaactatccaaacaacatcaactc 10853357  T
Q  231 ataaaaatcacttttacattaatgtatccaaacataaatcaatt 274  Q
    |||| |||||||||||  | | | ||||||||||||||||||||    
T  10853356 ataagaatcacttttaagtgagtatatccaaacataaatcaatt 10853313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 275
Target Start/End: Original strand, 26519616 - 26519720
Alignment:
Q  171 ttttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatc 270  Q
    ||||||||||| || ||| ||||||||||||| || |||  ||||||||| |||||||| ||||||||||||||||  | | ||||||||||||||||||    
T  26519616 ttttggtcattttacatttaaaatcaattttgtttcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatc 26519715  T
Q  271 aattc 275  Q
    |||||    
T  26519716 aattc 26519720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 153 - 274
Target Start/End: Original strand, 3348176 - 3348298
Alignment:
Q  153 aaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacatta 251  Q
    ||||||||||||| ||||| |||||||| || | ||||||||||||||||||| ||||  |||||||||  |||||||||||| ||| |||||||    |    
T  3348176 aaatacaattaaaaggataatttggtcaatacacattcaaaatcaattttgatataaaatatccaaacaacatcaactcataagaattacttttaaggaa 3348275  T
Q  252 atgtatccaaacataaatcaatt 274  Q
     ||||||||||||||||||||||    
T  3348276 gtgtatccaaacataaatcaatt 3348298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 118 - 239
Target Start/End: Original strand, 14959617 - 14959739
Alignment:
Q  118 ttgaaataattatataaaatgagatatttaattttaaatacaattaaag-gatattttggtcattatatattcaaaatcaattttgatttaaatcatcca 216  Q
    |||||||||| || ||||||||  ||||||||||||||||||||||||  |||| |||  || ||| | |||||||||||| ||||||| |||||||| |    
T  14959617 ttgaaataatcatctaaaatgaactatttaattttaaatacaattaaaaagataatttaatcgttacacattcaaaatcaagtttgattcaaatcatcta 14959716  T
Q  217 aacattatcaactcataaaaatc 239  Q
    ||||  |||||||||||||||||    
T  14959717 aacaacatcaactcataaaaatc 14959739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 267
Target Start/End: Original strand, 42318245 - 42318378
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    |||| ||| |||| ||||||||||||||||| ||||| ||| |||||| || |||||||||||||||||||| |||  ||||||||   |||||||||||    
T  42318245 aatgggatgtttagttttaaatacaattaaaaggataattttgtcattttacattcaaaatcaattttgattcaaactatccaaacgaaatcaactcata 42318344  T
Q  234 aaaatcacttttacattaatgtatccaaacataa 267  Q
    | ||||||||| | |  | |||||||||||||||    
T  42318345 agaatcactttcaaacaagtgtatccaaacataa 42318378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 275
Target Start/End: Complemental strand, 38172464 - 38172352
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    |||||||| ||||||||||| | |||||||||||||||| ||| |||  |||||||||  |||||||||||| |||||||| ||    | ||||||||||    
T  38172464 aaaggatagtttggtcattacacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataagaatcacttctattaaagtgtatccaaa 38172365  T
Q  263 cataaatcaattc 275  Q
    |||||||||||||    
T  38172364 cataaatcaattc 38172352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 274
Target Start/End: Complemental strand, 16246273 - 16246140
Alignment:
Q  142 tatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatca 240  Q
    |||||| ||||| ||||||||||| ||||| |||| |||||| | |||||||||||||||||||| |||  |||||||||  |||||||| ||| |||||    
T  16246273 tatttacttttacatacaattaaaaggatagtttgatcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaactcctaagaatca 16246174  T
Q  241 cttttacattaatgtatccaaacataaatcaatt 274  Q
    ||| ||    | ||| ||||||||||||||||||    
T  16246173 cttctattaaagtgtttccaaacataaatcaatt 16246140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 275
Target Start/End: Complemental strand, 23207248 - 23207113
Alignment:
Q  139 agatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaa 237  Q
    ||||||||| ||||||||||||||||| ||||  ||||||||||| |  |||||||| |||||||||| |||  ||| |||||  ||||||||||||||     
T  23207248 agatatttacttttaaatacaattaaaaggatggtttggtcattacaagttcaaaattaattttgattcaaactatc-aaacaacatcaactcataaaa- 23207151  T
Q  238 tcacttttacattaatgtatccaaacataaatcaattc 275  Q
    |||||| || |  | |||||||||||||||||||||||    
T  23207150 tcacttgtaaaaaagtgtatccaaacataaatcaattc 23207113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 267
Target Start/End: Complemental strand, 38125627 - 38125494
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    |||| ||| |||| ||||||||||||||||| ||||| ||| |||||| || ||||||||| |||||||||| |||  ||||||||   |||||||||||    
T  38125627 aatgggatgtttagttttaaatacaattaaaaggataattttgtcattttacattcaaaattaattttgattcaaactatccaaacgaaatcaactcata 38125528  T
Q  234 aaaatcacttttacattaatgtatccaaacataa 267  Q
    | ||||||||| | |  | |||||||||||||||    
T  38125527 agaatcactttcaaacaagtgtatccaaacataa 38125494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 275
Target Start/End: Complemental strand, 31619044 - 31618932
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    ||||||||  ||| |||||||| ||||||||| |||||||||| |||  |||||||||  |||||||||||| |||||||| ||  | |  |||||||||    
T  31619044 aaaggataagttgatcattatacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttctaagtgagagtatccaaa 31618945  T
Q  263 cataaatcaattc 275  Q
    |||||||||||||    
T  31618944 cataaatcaattc 31618932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 35425278 - 35425358
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcactt 243  Q
    |||||||| ||| ||||||| | |||||||||||||||||||| |||  ||||||||| ||||||||||||| ||||||||    
T  35425278 aaaggataatttagtcattacacattcaaaatcaattttgattcaaactatccaaacaatatcaactcataagaatcactt 35425358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 267
Target Start/End: Original strand, 53074766 - 53074951
Alignment:
Q  88 tgaagcaataaaaatccaaatatgataactttgaaataattatataaaat------gagatatttaattttaaatacaattaaa-ggatattttggtcat 180  Q
    ||||||| ||||||||||  ||||| ||||| ||||||||||| ||||||      |||||||||| || |||||||||||||| || ||  |||||| |    
T  53074766 tgaagcactaaaaatccatttatgacaactt-gaaataattatctaaaatatagatgagatatttagttataaatacaattaaaagggtaagttggtctt 53074864  T
Q  181 tatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataa 267  Q
    ||   ||| |||||||||||||||| |||  |||||||||  ||| |||||||| |||||||||||  | | |||||||||||||||    
T  53074865 tacgcatttaaaatcaattttgattcaaactatccaaacaacatccactcataagaatcacttttaagtgagtgtatccaaacataa 53074951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 275
Target Start/End: Original strand, 23496253 - 23496373
Alignment:
Q  149 ttttaaatacaattaaag-gatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttac 247  Q
    |||||||||||||||||  |||| ||| ||||||||| |||||||||||||||||||| |||  |||||||||  |||||| |  || |||||||||||     
T  23496253 ttttaaatacaattaaaatgatagtttagtcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaacccgcaagaatcactttta- 23496351  T
Q  248 attaatgtatccaaacataaatcaattc 275  Q
          ||||||||||||||||||||||    
T  23496352 ------gtatccaaacataaatcaattc 23496373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 275
Target Start/End: Original strand, 25847948 - 25848088
Alignment:
Q  135 aatgagatatttaattttaaatacaatt-aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    ||||| ||||||| |||| ||||||||| |||| ||| ||||||||||| | ||| |||||||||||| ||| || | |||||||||  |  ||||||||    
T  25847948 aatgaaatatttagtttttaatacaatttaaagtataatttggtcattacacatttaaaatcaatttttattcaact-atccaaacaacacaaactcata 25848046  T
Q  234 aaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    | ||||| |||||  | || ||||||||||||||||||||||    
T  25848047 agaatcatttttaagtgaaggtatccaaacataaatcaattc 25848088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 246
Target Start/End: Original strand, 22736910 - 22737008
Alignment:
Q  149 ttttaaatacaattaaagg-atattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcactttta 246  Q
    |||| |||||||||||| | ||| |||| |||||| | |||||||||||||||||||| ||| ||||| ||||  || ||||||||| |||||||||||    
T  22736910 tttttaatacaattaaaagtataatttgttcattacacattcaaaatcaattttgattcaaaccatcccaacaacattaactcataataatcactttta 22737008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 274
Target Start/End: Original strand, 32357444 - 32357566
Alignment:
Q  153 aaatacaattaaagg-atattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacatta 251  Q
    ||||||||||||||| |||||||| |||| | |  ||||||||||||||| ||| |||  | |||||||  |||||| ||||| ||||||||||| || |    
T  32357444 aaatacaattaaagggatattttgatcatcacacgttcaaaatcaattttaattcaaagtacccaaacaacatcaacacataagaatcacttttaaatga 32357543  T
Q  252 atgtatccaaacataaatcaatt 274  Q
     ||| | ||||||||||||||||    
T  32357544 gtgttttcaaacataaatcaatt 32357566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 274
Target Start/End: Complemental strand, 45423918 - 45423814
Alignment:
Q  170 attttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaat 269  Q
    |||||||| ||| || || ||||||||||||||||| ||   |||||||||  || || | |||| |||||||||||| ||||| ||||||||||||||     
T  45423918 attttggtaattgtacatccaaaatcaattttgattcaagctatccaaacaacatgaattgataagaatcacttttactttaatatatccaaacataaac 45423819  T
Q  270 caatt 274  Q
    |||||    
T  45423818 caatt 45423814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 267
Target Start/End: Complemental strand, 44939570 - 44939468
Alignment:
Q  164 aaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaac 263  Q
    ||||||| ||| ||||||| | ||||||||| |||||||||| |||  || ||||||  |||||||||||| |||||||| ||  | |||||||||||||    
T  44939570 aaggataatttagtcattagacattcaaaattaattttgattaaaactattcaaacaacatcaactcataagaatcacttata-gtaaatgtatccaaac 44939472  T
Q  264 ataa 267  Q
    ||||    
T  44939471 ataa 44939468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 30811674 - 30811608
Alignment:
Q  177 tcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcactt 243  Q
    |||||| | |||||||||||||||||||| |||  ||||||||| |||||| |||||| ||||||||    
T  30811674 tcattacacattcaaaatcaattttgattcaaactatccaaacaatatcaagtcataagaatcactt 30811608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 275
Target Start/End: Original strand, 38340724 - 38340861
Alignment:
Q  138 gagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaa 236  Q
    |||||||||| ||||| ||| ||| ||| ||||| |||||||| || | ||| |||||||||||| ||| |||  |||||||||   |||||| ||||||    
T  38340724 gagatatttagttttatatataataaaaaggataatttggtcactacacatttaaaatcaatttttattcaaactatccaaacaacgtcaacttataaaa 38340823  T
Q  237 atcacttttacattaatgtatccaaacataaatcaattc 275  Q
    || ||||||| || |   |||||||||||||||||||||    
T  38340824 attactttta-ataagcatatccaaacataaatcaattc 38340861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 3348130 - 3348162
Alignment:
Q  133 aaaatgagatatttaattttaaatacaattaaa 165  Q
    |||||||||||||||||||||||||||||||||    
T  3348130 aaaatgagatatttaattttaaatacaattaaa 3348162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 274
Target Start/End: Complemental strand, 49526803 - 49526715
Alignment:
Q  186 attcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaatt 274  Q
    |||||||| ||||||||||||| |  ||  |||||  || || | |||| ||||| |||||||| ||||||||||||||||||||||||    
T  49526803 attcaaaagcaattttgatttagactatttaaacaacataaattgataagaatcaattttacatgaatgtatccaaacataaatcaatt 49526715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 8424885 - 8424806
Alignment:
Q  164 aaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcactt 243  Q
    ||||||| ||| ||||||| | | |||||||||||||||||| |||  || ||||||  |||||||||||| ||||||||    
T  8424885 aaggataatttagtcattacacactcaaaatcaattttgattcaaactattcaaacaacatcaactcataagaatcactt 8424806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 5406976 - 5407008
Alignment:
Q  235 aaatcacttttacattaatgtatccaaacataa 267  Q
    ||||||||||||||| |||||||||||||||||    
T  5406976 aaatcacttttacatgaatgtatccaaacataa 5407008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 266
Target Start/End: Complemental strand, 40147860 - 40147832
Alignment:
Q  238 tcacttttacattaatgtatccaaacata 266  Q
    |||||||||||||||||||||||||||||    
T  40147860 tcacttttacattaatgtatccaaacata 40147832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 8e-67; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 87 - 275
Target Start/End: Complemental strand, 33899242 - 33899050
Alignment:
Q  87 atgaagcaataaaaatccaaatatgat----aactttgaaataattatataaaatgagatatttaattttaaatacaattaaa-ggatattttggtcatt 181  Q
    ||||||||||||||| | |||||||||    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33899242 atgaagcaataaaaaactaaatatgatcgataactt-gaaataattatataaaatgagatatttaattttaaatacaattaaaaggatattttggtcatt 33899144  T
Q  182 atatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    | | |||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  33899143 acacattcaaaatcaattttgatttaaaccatccaaacattattaactcataagaatcacttttacattagtgtatccaaacataaatcaattc 33899050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 163 - 275
Target Start/End: Complemental strand, 16442507 - 16442395
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    |||||||| ||||||||||| | |||||||||||||||| ||| |||| ||||||||| ||||||||||||  ||||||||||| || | ||||||||||    
T  16442507 aaaggatagtttggtcattacacattcaaaatcaattttcattcaaattatccaaacaatatcaactcatatgaatcacttttaaataagtgtatccaaa 16442408  T
Q  263 cataaatcaattc 275  Q
    |||||||||||||    
T  16442407 cataaatcaattc 16442395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 149 - 267
Target Start/End: Original strand, 13739135 - 13739254
Alignment:
Q  149 ttttaaatacaatta-aaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttac 247  Q
    |||||| |||||||| ||||||| |||||||||| || ||||||||| |||||||||| |||  |||||||||  |||||||||||| |||||||||||     
T  13739135 ttttaattacaattacaaggataatttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaa 13739234  T
Q  248 attaatgtatccaaacataa 267  Q
    |  | |||||||||||||||    
T  13739235 acaagtgtatccaaacataa 13739254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 172 - 275
Target Start/End: Complemental strand, 29409399 - 29409296
Alignment:
Q  172 tttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatca 271  Q
    ||||||||||||| ||||||||| |||||||||| |||  |||||||||  |||||||||||| ||||| ||||| |  | |||||||||||||||||||    
T  29409399 tttggtcattatacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcatttttaaaaaactgtatccaaacataaatca 29409300  T
Q  272 attc 275  Q
    ||||    
T  29409299 attc 29409296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 275
Target Start/End: Original strand, 10826006 - 10826147
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    ||||| ||||||| || ||| || ||||||| ||||| ||||||||||  ||||| ||||| |||||||||| |||  |||||||||  |||||||||||    
T  10826006 aatgaaatatttatttctaattataattaaaaggatagtttggtcattccatatttaaaattaattttgattcaaactatccaaacaaaatcaactcata 10826105  T
Q  234 aaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    | ||||||||||| || | | |||||||||| ||||||||||    
T  10826106 agaatcacttttaaataagtatatccaaacaaaaatcaattc 10826147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 275
Target Start/End: Original strand, 16548068 - 16548195
Alignment:
Q  149 ttttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttac 247  Q
    ||||||||||||||||| ||||| ||| ||||||| | |||||||||||||||||||| |||  |||||||||  |||||| || |  |||||||||||     
T  16548068 ttttaaatacaattaaaaggatagtttagtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcactttta- 16548166  T
Q  248 attaa-tgtatccaaacataaatcaattc 275  Q
    || || |||||||||||||||||||||||    
T  16548167 ataaagtgtatccaaacataaatcaattc 16548195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 267
Target Start/End: Original strand, 13744651 - 13744754
Alignment:
Q  164 aaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaac 263  Q
    ||||||| |||||||||| || ||||||||| |||||||||| |||  |||||||||  |||||||||||| ||||||||||| |  | |||||||||||    
T  13744651 aaggataatttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaacaagtgtatccaaac 13744750  T
Q  264 ataa 267  Q
    ||||    
T  13744751 ataa 13744754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 267
Target Start/End: Original strand, 31132395 - 31132512
Alignment:
Q  151 ttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacat 249  Q
    ||||| ||||||||| || || ||||||||||  |  ||||||||||||||||||| |||  |||||||||  |||||| ||||| ||||||||||| ||    
T  31132395 ttaaagacaattaaaagggtaatttggtcatttaaagttcaaaatcaattttgattcaaactatccaaacaacatcaacccataagaatcacttttaaat 31132494  T
Q  250 taatgtatccaaacataa 267  Q
     | |||||||||| ||||    
T  31132495 aagtgtatccaaaaataa 31132512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 267
Target Start/End: Complemental strand, 6208218 - 6208115
Alignment:
Q  164 aaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaac 263  Q
    ||||||| ||| ||||||| | ||||||||| |||||||||| |||  ||| |||||  |||||||||||| |||||||||||    | |||||||||||    
T  6208218 aaggataatttagtcattagacattcaaaattaattttgattcaaactatctaaacaacatcaactcataagaatcacttttagtaaagtgtatccaaac 6208119  T
Q  264 ataa 267  Q
    ||||    
T  6208118 ataa 6208115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 17830169 - 17830098
Alignment:
Q  149 ttttaaatacaattaaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaaca 220  Q
    ||||||||||||||||| |||| ||  ||||||| | |||||||||||||||||||| |||  |||||||||    
T  17830169 ttttaaatacaattaaacgatagttcagtcattacacattcaaaatcaattttgattcaaactatccaaaca 17830098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 274
Target Start/End: Complemental strand, 21255049 - 21254924
Alignment:
Q  149 ttttaaatacaattaaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttaca 248  Q
    |||||||||||||||||    |||||||| ||||||  ||||||| ||||||||||| |||  | | |||||  || || | |||| ||||| |||||      
T  21255049 ttttaaatacaattaaaatccattttggtaattatactttcaaaagcaattttgattcaaactaccgaaacaacataaattgataagaatcaattttagg 21254950  T
Q  249 ttaatgtatccaaacataaatcaatt 274  Q
    ||| ||||||||||||||||||||||    
T  21254949 ttattgtatccaaacataaatcaatt 21254924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 271
Target Start/End: Original strand, 4910983 - 4911016
Alignment:
Q  238 tcacttttacattaatgtatccaaacataaatca 271  Q
    |||||||||||| |||||||||||||||||||||    
T  4910983 tcacttttacataaatgtatccaaacataaatca 4911016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 26405580 - 26405621
Alignment:
Q  233 aaaaatcacttttacattaatgtatccaaacataaatcaatt 274  Q
    |||||| | ||||||||||||||||||||||||||| |||||    
T  26405580 aaaaattaattttacattaatgtatccaaacataaaacaatt 26405621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 271
Target Start/End: Original strand, 34620961 - 34620994
Alignment:
Q  238 tcacttttacattaatgtatccaaacataaatca 271  Q
    |||||||||||| |||||||||||||||||||||    
T  34620961 tcacttttacataaatgtatccaaacataaatca 34620994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 271
Target Start/End: Original strand, 34748398 - 34748431
Alignment:
Q  238 tcacttttacattaatgtatccaaacataaatca 271  Q
    |||||||||||| |||||||||||||||||||||    
T  34748398 tcacttttacataaatgtatccaaacataaatca 34748431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 1499975 - 1500011
Alignment:
Q  238 tcacttttacattaatgtatccaaacataaatcaatt 274  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  1499975 tcacttttacataaatgtattcaaacataaatcaatt 1500011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 68 - 275
Target Start/End: Complemental strand, 40742545 - 40742340
Alignment:
Q  68 gtactattaataatgattaatgaagcaataaaaatccaaatatgataactttgaaataattatataaaatgagatatttaattttaaatacaatt-aaag 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| |||||| ||||    
T  40742545 gtactattaataatgattaatgaagcaataaaaatccaaatatgataac-ttaaaataattatataaaatgaaatatttaattttaaacacaattaaaag 40742447  T
Q  167 gatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacata 266  Q
    | || |||||||| || | ||| ||||||||||||||||||||  |||||||||| |||||||||||| ||||||  |||||||| ||||||||||||||    
T  40742446 ggtaatttggtcactacacatttaaaatcaattttgatttaaaatatccaaacatcatcaactcataagaatcac--ttacattagtgtatccaaacata 40742349  T
Q  267 aatcaattc 275  Q
    |||||||||    
T  40742348 aatcaattc 40742340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 122 - 273
Target Start/End: Original strand, 26125481 - 26125634
Alignment:
Q  122 aataattatataaaatgagatattt-aattttaaatacaattaaag-gatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaac 219  Q
    ||||||||||||||||||||||||| |||||||||||||||||||  |||||||| ||||||| | |||||||||||||||||||||||| | |||||||    
T  26125481 aataattatataaaatgagatattttaattttaaatacaattaaaaagatattttcgtcattacacattcaaaatcaattttgatttaaaccgtccaaac 26125580  T
Q  220 attatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaat 273  Q
    ||||||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  26125581 attatcaactcataagaatcatttttacattagtgtatccaaacataaatcaat 26125634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 68 - 265
Target Start/End: Complemental strand, 30085881 - 30085681
Alignment:
Q  68 gtactattaataatgattaatgaagcaataaaaatccaaatatgataactttgaaataattatataaaatgagatatttaattttaaatacaatt-aaag 166  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||| ||||    
T  30085881 gtaccattaataatgattaatgaagcaataaaaatccaaatatgataac-ttgaaataattatataaaatgaaatatttaattttaaacacaattaaaag 30085783  T
Q  167 gatattttggtcattatatat------tcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatcca 260  Q
    | || |||||||| || ||||      |||| |||||||||||||||||  ||||||||||  |||||||   | |||||||||||||||| ||||||||    
T  30085782 ggtaatttggtcactacatatttaaaatcaatatcaattttgatttaaaatatccaaacatcgtcaactc---agaatcacttttacattagtgtatcca 30085686  T
Q  261 aacat 265  Q
    |||||    
T  30085685 aacat 30085681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 275
Target Start/End: Complemental strand, 28425654 - 28425517
Alignment:
Q  139 agatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaa 237  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||||| |  ||||||||||||||||||| |||  |||||||||   ||||||||||| ||    
T  28425654 agatatttacttttaaatacaattaaaaggatagtttggtcattacacgttcaaaatcaattttgattcaaactatccaaacaacgtcaactcataagaa 28425555  T
Q  238 tcacttttacattaatgtatccaaacataaatcaattc 275  Q
    |||||| ||    | |||||||||||||||||||||||    
T  28425554 tcacttgtaagaaagtgtatccaaacataaatcaattc 28425517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 267
Target Start/End: Complemental strand, 36114210 - 36114093
Alignment:
Q  151 ttaaatacaattaaagga-tattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacat 249  Q
    ||||||||||||||| || || ||||||||||  || ||||||||||||||||||| |||| ||||||||| ||||||||||||| ||||||||||| |     
T  36114210 ttaaatacaattaaaagagtaatttggtcatttaatgttcaaaatcaattttgattcaaattatccaaacaatatcaactcataagaatcacttttaaac 36114111  T
Q  250 taatgtatccaaacataa 267  Q
     | |||||||||||||||    
T  36114110 gagtgtatccaaacataa 36114093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 275
Target Start/End: Original strand, 40742063 - 40742188
Alignment:
Q  151 ttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacat 249  Q
    ||||||||||||||| ||||| |||| |||||| | |||||||||||| ||| ||| |||||||||||||| ||||||||||||| ||||| |||||       
T  40742063 ttaaatacaattaaaaggataatttgatcattacacattcaaaatcaagtttcattcaaatcatccaaacaatatcaactcataagaatcaattttatta 40742162  T
Q  250 taatgtatccaaacataaatcaattc 275  Q
     | |||||||||||||||||||||||    
T  40742163 aagtgtatccaaacataaatcaattc 40742188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 140 - 275
Target Start/End: Complemental strand, 6399289 - 6399153
Alignment:
Q  140 gatatttaattttaaatacaattaaag-gatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaat 238  Q
    |||||||| ||| ||| |||||||||  |||| ||||||||||  | |||||||||||||||||||| |||| |||||||||  |||||||||||| |||    
T  6399289 gatatttagtttcaaaaacaattaaaaagataatttggtcattgcacattcaaaatcaattttgattaaaattatccaaacaacatcaactcataagaat 6399190  T
Q  239 cacttttacattaatgtatccaaacataaatcaattc 275  Q
    ||||||||  | | |||||| ||||||||||||||||    
T  6399189 cacttttaagtgagtgtatcgaaacataaatcaattc 6399153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 275
Target Start/End: Original strand, 43550828 - 43550955
Alignment:
Q  149 ttttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttac 247  Q
    ||||||||||||||||| ||||| ||| ||| ||| | |||||||||||||||||||| |||| |||||||||  |||||| || || |||||||||||     
T  43550828 ttttaaatacaattaaaaggatagtttagtctttacacattcaaaatcaattttgattcaaattatccaaacaacatcaacccacaagaatcactttta- 43550926  T
Q  248 attaa-tgtatccaaacataaatcaattc 275  Q
    || || |||||||||||||||||||||||    
T  43550927 ataaagtgtatccaaacataaatcaattc 43550955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 153 - 274
Target Start/End: Complemental strand, 38152342 - 38152220
Alignment:
Q  153 aaatacaattaaagg-atattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacatta 251  Q
    ||||||||||||||| ||| ||||||||||| |  |||||||||||||||||||||||  ||||||||   |||||||||||| ||||| |||||  | |    
T  38152342 aaatacaattaaagggatactttggtcattacacgttcaaaatcaattttgatttaaagtatccaaaccacatcaactcataagaatcatttttaagtaa 38152243  T
Q  252 atgtatccaaacataaatcaatt 274  Q
    || | ||||||||||||||||||    
T  38152242 atatttccaaacataaatcaatt 38152220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 275
Target Start/End: Original strand, 3467456 - 3467597
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    ||||| ||||||| || ||| || ||||||| ||||| ||||||||||  ||||| |||||||||||||||| |||  |||||| ||  ||||| |||||    
T  3467456 aatgaaatatttatttctaattataattaaaaggatagtttggtcattccatatttaaaatcaattttgattcaaactatccaaccaacatcaattcata 3467555  T
Q  234 aaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    | ||||||||||| || ||| |||||||||| ||||||||||    
T  3467556 agaatcacttttaaataaatatatccaaacagaaatcaattc 3467597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 275
Target Start/End: Complemental strand, 4941938 - 4941826
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    |||| ||| |||||||||| || |||||||||||||||| ||| |||| || ||||||  |||||||||||| |||| |||||| || | | ||||||||    
T  4941938 aaagaataatttggtcattttacattcaaaatcaattttaattcaaattattcaaacaacatcaactcataagaatcgcttttaaataattttatccaaa 4941839  T
Q  263 cataaatcaattc 275  Q
    |||||||||||||    
T  4941838 cataaatcaattc 4941826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 177 - 275
Target Start/End: Original strand, 42148971 - 42149069
Alignment:
Q  177 tcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    ||||| || |||||||||||||||||||| |||| ||| |||||  |||||||||||  ||||||||||| || | | |||||||||||||||||||||    
T  42148971 tcattttacattcaaaatcaattttgattcaaattatctaaacaacatcaactcatacgaatcacttttaaataagtctatccaaacataaatcaattc 42149069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 275
Target Start/End: Complemental strand, 34343037 - 34342898
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaaggat-attttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    |||||| | |||| ||| ||||||||||||| ||| | ||||||||||| |  ||||||||||||||||||| |||| |||||||||  ||| ||| |||    
T  34343037 aatgaggtgtttattttaaaatacaattaaaagattaatttggtcattacac-ttcaaaatcaattttgattcaaattatccaaacaacatccact-ata 34342940  T
Q  234 aaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    | ||||||||||| || ||| |||||||||| ||||||||||    
T  34342939 agaatcacttttaaataaatttatccaaacaaaaatcaattc 34342898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 275
Target Start/End: Complemental strand, 440346 - 440234
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    ||||||||  |||||||||||| ||||||||||| |||||||| ||   |||||||||   | ||||||||| ||||| |||||  | ||||||||||||    
T  440346 aaaggataagttggtcattatacattcaaaatcagttttgattcaatctatccaaacaacgttaactcataagaatcatttttaactgaatgtatccaaa 440247  T
Q  263 cataaatcaattc 275  Q
    |||||||||||||    
T  440246 cataaatcaattc 440234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 3097339 - 3097251
Alignment:
Q  187 ttcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    ||||||||||||||||||| |||  |||||||||  |||||||||||| |||||||||||  | | | |||||||||||||||||||||    
T  3097339 ttcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaagtgagtatatccaaacataaatcaattc 3097251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 267
Target Start/End: Complemental strand, 25698116 - 25698012
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    ||||| || |||||| |||  |||||||||||||||||||||| |||  |||||||||  |||||||||||| ||||||||||| || | | ||||||||    
T  25698116 aaagggtaatttggttatttaatattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaataagtttatccaaa 25698017  T
Q  263 cataa 267  Q
    |||||    
T  25698016 cataa 25698012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 266
Target Start/End: Original strand, 27649685 - 27649801
Alignment:
Q  151 ttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacat 249  Q
    ||||||| ||||||| || || ||||||||||  || ||||||||||||||||||| |||  |||||||||  |||||||||||| ||||||||||| ||    
T  27649685 ttaaatataattaaaagggtaatttggtcattcaatgttcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaat 27649784  T
Q  250 taatgtatccaaacata 266  Q
     | |||||| |||||||    
T  27649785 gagtgtatctaaacata 27649801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 246
Target Start/End: Original strand, 41981080 - 41981192
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaag-gatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    ||||| ||||||| || ||| ||||||||||  |||| ||||||||||  ||||| |||||||||||||||| |||  |||||||||  |||||||||||    
T  41981080 aatgaaatatttatttctaattacaattaaaaagatagtttggtcattccatatttaaaatcaattttgattcaaagtatccaaacaacatcaactcata 41981179  T
Q  234 aaaatcactttta 246  Q
    | |||||||||||    
T  41981180 agaatcactttta 41981192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 275
Target Start/End: Original strand, 29023200 - 29023303
Alignment:
Q  172 tttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatca 271  Q
    |||||||||| || |||||||||||||||||||| |||  |||||||||  |||||||||||| ||||| ||||| |  | |||||||||| ||||| ||    
T  29023200 tttggtcattttacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataacaatcaattttaaacaagtgtatccaaatataaacca 29023299  T
Q  272 attc 275  Q
    ||||    
T  29023300 attc 29023303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 267
Target Start/End: Original strand, 44926778 - 44926897
Alignment:
Q  149 ttttaaatacaatta-aaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttac 247  Q
    |||||| |||||||| || |||| |||||||||| || ||||||||| |||||||||| |||  ||||||| |  |||||||||||| |||||||||||     
T  44926778 ttttaattacaattacaaagataatttggtcattttacattcaaaattaattttgattcaaactatccaaataacatcaactcataagaatcacttttaa 44926877  T
Q  248 attaatgtatccaaacataa 267  Q
    |  | |||||||||||||||    
T  44926878 acaagtgtatccaaacataa 44926897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 274
Target Start/End: Complemental strand, 3619218 - 3619114
Alignment:
Q  170 attttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaat 269  Q
    |||||||| |||||| ||| |||||||||||||||| |||  |||||||||  ||  | | |||| ||||||||| | ||||||||||||||||| ||||    
T  3619218 attttggtaattatacatttaaaatcaattttgattcaaactatccaaacaacatacattgataagaatcactttcatattaatgtatccaaacacaaat 3619119  T
Q  270 caatt 274  Q
    |||||    
T  3619118 caatt 3619114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 267
Target Start/End: Original strand, 8124933 - 8125027
Alignment:
Q  173 ttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataa 267  Q
    |||||||||||  ||| |||||||||||||||| |||  |||||||||   ||||||| ||| ||||||||||| || | |||||||||||||||    
T  8124933 ttggtcattatccatttaaaatcaattttgattcaaactatccaaacaacttcaactcctaagaatcacttttaaatgagtgtatccaaacataa 8125027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 24897710 - 24897640
Alignment:
Q  197 attttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataa 267  Q
    ||||||||| |||| |||||||||  |||||||||||| ||||| ||||| || |||||||||||||||||    
T  24897710 attttgattcaaattatccaaacaacatcaactcataagaatcaattttaaataaatgtatccaaacataa 24897640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 264
Target Start/End: Original strand, 16915013 - 16915114
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    ||||| || ||| ||||||| | |||||||||||||||||||  ||| || |||||||| || ||||||||| |||||||||||  ||  ||||||||||    
T  16915013 aaaggttaatttagtcattacacattcaaaatcaattttgatacaaaccaaccaaacatcattaactcataagaatcacttttatgttggtgtatccaaa 16915112  T
Q  263 ca 264  Q
    ||    
T  16915113 ca 16915114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 275
Target Start/End: Complemental strand, 22936950 - 22936838
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaa-tgtatccaa 261  Q
    |||||||| ||| |||||||||||||||||| ||| ||||||| |||  |||||||||  |||||  || || |||||||| || || || |||||||||    
T  22936950 aaaggatagtttagtcattatatattcaaaaccaaatttgattcaaactatccaaacaacatcaatccacaagaatcacttcta-ataaagtgtatccaa 22936852  T
Q  262 acataaatcaattc 275  Q
    ||||||||||||||    
T  22936851 acataaatcaattc 22936838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 275
Target Start/End: Complemental strand, 31246465 - 31246360
Alignment:
Q  170 attttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaat 269  Q
    |||||||| |||||  ||| |||||||||||||||  || | |||||||||  || || | |||| |||||||||| | |||| ||||||||||||||||    
T  31246465 attttggtaattatgcatttaaaatcaattttgatccaagttatccaaacaacatgaatttataagaatcacttttgctttaaggtatccaaacataaat 31246366  T
Q  270 caattc 275  Q
    ||||||    
T  31246365 caattc 31246360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 275
Target Start/End: Complemental strand, 33627168 - 33627079
Alignment:
Q  186 attcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    |||||||||| ||||||||| |||  |||||||||  || ||||||||| |||||||||||    | |||||||||||||||||||||||    
T  33627168 attcaaaatcgattttgattcaaactatccaaacaacattaactcataagaatcacttttagtaaagtgtatccaaacataaatcaattc 33627079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 275
Target Start/End: Complemental strand, 41289192 - 41289103
Alignment:
Q  186 attcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    |||||||||||||||||||| |||  |||||||||  ||||||  |||| |||||||||||    | |||||||||||||||||||||||    
T  41289192 attcaaaatcaattttgattcaaactatccaaacaacatcaacctataagaatcacttttagtaaagtgtatccaaacataaatcaattc 41289103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 274
Target Start/End: Complemental strand, 22552890 - 22552786
Alignment:
Q  170 attttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaat 269  Q
    ||||| || |||||| || |||||||||||||  || |||  |||||||||  || || | |||| ||||||||||||| ||||| ||||||||||||||    
T  22552890 attttagtaattatacatccaaaatcaattttagttgaaagtatccaaacaacatgaattgataataatcacttttacaataatgcatccaaacataaat 22552791  T
Q  270 caatt 274  Q
    |||||    
T  22552790 caatt 22552786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 26243014 - 26243100
Alignment:
Q  135 aatgagatatttaattttaaatacaatt-aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaaca 220  Q
    ||||||||||||| |||||||||||||| |||| ||| ||||||  |||   |||||||||||||||||||| |||  |||||||||    
T  26243014 aatgagatatttacttttaaatacaattaaaagaatagtttggtttttacgcattcaaaatcaattttgattcaaactatccaaaca 26243100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 42143486 - 42143409
Alignment:
Q  198 ttttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    ||||| || |||| |||||||||   ||||||||||| ||||||||||| || | | |||||||||||||||||||||    
T  42143486 ttttgtttcaaattatccaaacaacgtcaactcataagaatcacttttaaataagtttatccaaacataaatcaattc 42143409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 267
Target Start/End: Complemental strand, 45147383 - 45147303
Alignment:
Q  187 ttcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataa 267  Q
    ||||||||||||||||||| || | || |||||| |||||||| |||| ||||||||||| || |  || |||||||||||    
T  45147383 ttcaaaatcaattttgattcaagttattcaaacaatatcaacttataagaatcacttttaaatgagagtgtccaaacataa 45147303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 273
Target Start/End: Original strand, 11126494 - 11126578
Alignment:
Q  189 caaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaat 273  Q
    |||| |||||||||||| |||  |||||||||  |  ||||||| |||||||||| |  || | |||||||||||||||||||||    
T  11126494 caaactcaattttgattcaaactatccaaacaacacaaactcatgaaaatcacttatttataagtgtatccaaacataaatcaat 11126578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 113
Target Start/End: Original strand, 40741938 - 40741966
Alignment:
Q  85 taatgaagcaataaaaatccaaatatgat 113  Q
    |||||||||||||||||||||||||||||    
T  40741938 taatgaagcaataaaaatccaaatatgat 40741966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 90 - 275
Target Start/End: Original strand, 3375377 - 3375567
Alignment:
Q  90 aagcaataaaaatccaaatatgataactttgaaataattatataaaat-----gagatatttaattttaaatacaattaaa-ggatattttggtcattat 183  Q
    |||||||||||||||||||| ||| |||| ||||||||||| ||||||     |||||||||||||||||||||||||||| ||||| ||||||||||      
T  3375377 aagcaataaaaatccaaataagattactt-gaaataattatctaaaatataatgagatatttaattttaaatacaattaaaaggataatttggtcattgc 3375475  T
Q  184 atattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    | |||||||||||||||||||  ||||||||||||||  ||| |||||||| |||||||||||  | | |||||||||||| ||||||||||    
T  3375476 acattcaaaatcaattttgatccaaatcatccaaacaacatcgactcataagaatcacttttaagtgagtgtatccaaacacaaatcaattc 3375567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 121 - 267
Target Start/End: Original strand, 9456023 - 9456174
Alignment:
Q  121 aaataattatataaaatga----gatatttaattttaaatacaattaaag-gatattttggtcattatatattcaaaatcaattttgatttaaatcatcc 215  Q
    |||||||||| ||||||||    |||||||| |||||||||||||||||  |||| |||||||||| || |||||||||||||||||||| |||  ||||    
T  9456023 aaataattatctaaaatgaaaatgatatttagttttaaatacaattaaaaagataatttggtcattttacattcaaaatcaattttgattcaaactatcc 9456122  T
Q  216 aaacattatcaactcataaaaatcacttttacattaatgtatccaaacataa 267  Q
    |||||  |||||||||||| ||||||||||| |  | |||||||||||||||    
T  9456123 aaacaagatcaactcataagaatcacttttaaacaagtgtatccaaacataa 9456174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 275
Target Start/End: Complemental strand, 3622633 - 3622492
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    ||||||||||||| || |||||||||||||| ||||| |||| || ||| | ||| |||||||||||||||||| |  |||||||||  |||||||| ||    
T  3622633 aatgagatatttacttctaaatacaattaaaaggatactttgatcgttacacatttaaaatcaattttgatttatactatccaaacaacatcaactcgta 3622534  T
Q  234 aaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    | |||||||||||  | | |||||||||||||||||||||||    
T  3622533 agaatcacttttaagtaagtgtatccaaacataaatcaattc 3622492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 275
Target Start/End: Complemental strand, 34366154 - 34366014
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    ||||||||||||||||||||| ||| ||||| || || |||||||||||    ||||||||||||||| ||| |||  |||||||||  |||||||||||    
T  34366154 aatgagatatttaattttaaacacagttaaaagggtaatttggtcattacgccttcaaaatcaatttttattcaaactatccaaacaacatcaactcata 34366055  T
Q  234 aaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    ||||||||||||| || |  ||||||||||||||||||||||    
T  34366054 aaaatcactttta-ataagcgtatccaaacataaatcaattc 34366014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 12632248 - 12632144
Alignment:
Q  143 atttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcac 241  Q
    ||||| ||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||| |||  || ||||||  |||||||||||| ||||||    
T  12632248 atttagttttaaatacaattaaaaggatattttggtcattacacattcaaaatcaattttgattcaaacaattcaaacaacatcaactcataagaatcac 12632149  T
Q  242 tttta 246  Q
    |||||    
T  12632148 tttta 12632144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 275
Target Start/End: Original strand, 3342755 - 3342867
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    |||||||| ||||||||||| |||||||||||||||||||||| |||  || ||||||  |||||||||||| |||||||| ||    | ||||||||||    
T  3342755 aaaggatagtttggtcattacatattcaaaatcaattttgattcaaactattcaaacaacatcaactcataagaatcacttctattaaagtgtatccaaa 3342854  T
Q  263 cataaatcaattc 275  Q
    |||||||||||||    
T  3342855 cataaatcaattc 3342867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 275
Target Start/End: Original strand, 37562535 - 37562647
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    |||||||| ||||||||||| | || ||||||||||||| ||| |||  |||||||||  |||||||||||  ||||||||||| || | ||||||||||    
T  37562535 aaaggatagtttggtcattacacatacaaaatcaattttcattcaaactatccaaacaacatcaactcatatgaatcacttttaaataagtgtatccaaa 37562634  T
Q  263 cataaatcaattc 275  Q
    |||||||||||||    
T  37562635 cataaatcaattc 37562647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 275
Target Start/End: Complemental strand, 39391306 - 39391169
Alignment:
Q  139 agatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaa 237  Q
    ||||||||| ||||||||||||||||| ||||| || |||||||| |  ||||||||||||||||||| |||  || ||||||  ||||| |||||| ||    
T  39391306 agatatttacttttaaatacaattaaaaggatagttaggtcattacacgttcaaaatcaattttgattcaaactattcaaacaacatcaattcataagaa 39391207  T
Q  238 tcacttttacattaatgtatccaaacataaatcaattc 275  Q
    |||||| ||    | |||||||||||||||||||||||    
T  39391206 tcacttgtaagaaagtgtatccaaacataaatcaattc 39391169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 170 - 274
Target Start/End: Complemental strand, 40903304 - 40903200
Alignment:
Q  170 attttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaat 269  Q
    |||||||| |||||| || |||||||||||||||||| ||  |||||||||  || || | ||||||||||||||||| ||||| ||||||||||||||     
T  40903304 attttggtaattatacatccaaaatcaattttgatttgaactatccaaacaacatgaattgataaaaatcacttttactttaatatatccaaacataaac 40903205  T
Q  270 caatt 274  Q
    |||||    
T  40903204 caatt 40903200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 275
Target Start/End: Complemental strand, 43738103 - 43737971
Alignment:
Q  144 tttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcact 242  Q
    |||| ||| ||||||||||||| || || ||||||||||  | |||||||||||||||||||| |||  |||||||||  ||| |||||||| |||||||    
T  43738103 tttactttaaaatacaattaaaaggttaatttggtcatttcacattcaaaatcaattttgattcaaactatccaaacaacatccactcataagaatcact 43738004  T
Q  243 tttacattaatgtatccaaacataaatcaattc 275  Q
    |||| || | | |||||||||| ||||||||||    
T  43738003 tttaaataagtttatccaaacaaaaatcaattc 43737971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 275
Target Start/End: Complemental strand, 44967543 - 44967431
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    |||||||| ||||||||||| | | |||||||||||||||||| |||| |||||||||  |||||||||||| |||||||| ||    | ||||| ||||    
T  44967543 aaaggataatttggtcattacaaactcaaaatcaattttgattcaaattatccaaacaacatcaactcataagaatcacttctattaaagtgtattcaaa 44967444  T
Q  263 cataaatcaattc 275  Q
    |||||||||||||    
T  44967443 cataaatcaattc 44967431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 275
Target Start/End: Original strand, 38230018 - 38230145
Alignment:
Q  149 ttttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttac 247  Q
    ||||||||||||||||| ||||| ||| ||||||| | ||| |||||||||||||||| |||  |||||||||  |||||| || |  |||||||||||     
T  38230018 ttttaaatacaattaaatggatagtttagtcattacacatttaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcacttttaa 38230117  T
Q  248 attaatgtatccaaacataaatcaattc 275  Q
       |||||||||||||||||||||||||    
T  38230118 taaaatgtatccaaacataaatcaattc 38230145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 274
Target Start/End: Complemental strand, 34011115 - 34010994
Alignment:
Q  155 atacaattaaagg-atattttggtcattatatattcaaaatcaattttgatttaaatcatcc-aaacattatcaactcataaaaatcacttttacattaa 252  Q
    ||||||||||||| ||||| ||||||||| |  |||||||||||||||||||||||  | || |||||  |||||||||||| |||||||||||  | ||    
T  34011115 atacaattaaagggatattgtggtcattacacgttcaaaatcaattttgatttaaagtaccccaaacaacatcaactcataagaatcacttttaagtgaa 34011016  T
Q  253 tgtatccaaacataaatcaatt 274  Q
    ||| ||||||||||||| ||||    
T  34011015 tgtttccaaacataaattaatt 34010994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 275
Target Start/End: Original strand, 48459646 - 48459787
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    |||| |||||||||||||||||| ||||||| ||||| ||||||||||| | | | |||||||||||| ||  | |  |||||||||  ||| | |||||    
T  48459646 aatgggatatttaattttaaatataattaaaaggatagtttggtcattacacacttaaaatcaattttaatacatactatccaaacaacatccattcata 48459745  T
Q  234 aaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    | |||||||||||  | | |||||||||||||||||||||||    
T  48459746 agaatcacttttaagtaagtgtatccaaacataaatcaattc 48459787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 274
Target Start/End: Original strand, 42740328 - 42740468
Alignment:
Q  135 aatgagatatttaattttaaatacaatt-aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    ||||||||||||| ||||||||| |||| ||| |||| ||||||||||| | | | |||||||||||||||  | |  ||||||||| ||||||| ||||    
T  42740328 aatgagatatttacttttaaatataattaaaatgatactttggtcattacacacttaaaatcaattttgatacatactatccaaacaatatcaacacata 42740427  T
Q  234 aaaatcacttttacattaatgtatccaaacataaatcaatt 274  Q
    | |||||||||||  | | | |||| |||||||||||||||    
T  42740428 agaatcacttttaagtaagtatatctaaacataaatcaatt 42740468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 242
Target Start/End: Complemental strand, 47301730 - 47301622
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    |||||||| |||| ||||||||| ||||||| ||||| ||| |||||| || |||||||||||||||||||| |||  |||||||||  |||||| ||||    
T  47301730 aatgagatgtttagttttaaatataattaaaaggataatttagtcattttacattcaaaatcaattttgattcaaactatccaaacaacatcaacccata 47301631  T
Q  234 aaaatcact 242  Q
    | |||||||    
T  47301630 agaatcact 47301622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 275
Target Start/End: Original strand, 47021862 - 47021996
Alignment:
Q  142 tatttaattttaaatacaattaaag-gatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatca 240  Q
    |||||| |||||||||||||||||  |||| ||||||||||  | |||||||||||||||| ||| |||| |||||||||  ||||| || ||| |||||    
T  47021862 tatttacttttaaatacaattaaaatgataatttggtcattgcacattcaaaatcaattttcattcaaattatccaaacaacatcaattcgtaagaatca 47021961  T
Q  241 cttttacattaatgtatccaaacataaatcaattc 275  Q
    | | ||    | |||||||||||||||||||||||    
T  47021962 catctagtaaagtgtatccaaacataaatcaattc 47021996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 267
Target Start/End: Original strand, 19095889 - 19096005
Alignment:
Q  151 ttaaatacaattaaagga-tattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacat 249  Q
    ||||||||||||||| || || ||||||||||  || ||||||||||||||||||| |||| |||||||||  || ||||||||| ||||| ||||| |     
T  19095889 ttaaatacaattaaaagagtaatttggtcatttaatgttcaaaatcaattttgattcaaattatccaaacaacat-aactcataagaatcatttttaaac 19095987  T
Q  250 taatgtatccaaacataa 267  Q
     | |||||||||||||||    
T  19095988 gagtgtatccaaacataa 19096005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 267
Target Start/End: Original strand, 48134557 - 48134649
Alignment:
Q  175 ggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataa 267  Q
    |||||||| | |||||||||||||||||||| |||  |||||||||  ||||||| |||||||||||||||| |  | | |||||||||||||    
T  48134557 ggtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaacttataaaaatcacttttaaacaagtttatccaaacataa 48134649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 275
Target Start/End: Complemental strand, 386635 - 386513
Alignment:
Q  153 aaatacaattaaaggatattttggtcattatatattcaaaa-tcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacatta 251  Q
    ||||| ||| |||||||| ||||||||||||| ||| |||| |||||||||||| ||   |||||||||  ||||| |||||| ||||||||||   |||    
T  386635 aaatagaataaaaggataatttggtcattatacatttaaaaatcaattttgattcaatctatccaaacaacatcaa-tcataagaatcacttttcggtta 386537  T
Q  252 atgtatccaaacataaatcaattc 275  Q
     | |||||||||||||||||||||    
T  386536 gtatatccaaacataaatcaattc 386513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 274
Target Start/End: Original strand, 1766398 - 1766501
Alignment:
Q  171 ttttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatc 270  Q
    ||||||| |||| | | |||||||||||||| ||| |||| || ||||||| ||||| | |||| |||||||||||  |||| ||||||||| |||||||    
T  1766398 ttttggtaattacacactcaaaatcaattttaattcaaattattcaaacatcatcaattgataagaatcacttttatgttaaggtatccaaatataaatc 1766497  T
Q  271 aatt 274  Q
    ||||    
T  1766498 aatt 1766501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 275
Target Start/End: Complemental strand, 10372116 - 10371990
Alignment:
Q  149 ttttaaatacaattaaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttaca 248  Q
    |||||||||||||||||||||  ||| |||||||   |||||||||||||||||||| |||  |||| ||||  |||||| || || |||||||| || |    
T  10372116 ttttaaatacaattaaaggatggtttagtcattacgcattcaaaatcaattttgattcaaactatccgaacaacatcaacccacaagaatcacttcta-a 10372018  T
Q  249 ttaa-tgtatccaaacataaatcaattc 275  Q
    | || |||| ||||||||||||||||||    
T  10372017 taaactgtaaccaaacataaatcaattc 10371990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 267
Target Start/End: Original strand, 34010292 - 34010409
Alignment:
Q  151 ttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacat 249  Q
    ||||||| ||||||| || || ||||||||||  || |||||||| |||||||||| |||  |||||||||  |||||||||||| || |||||||| ||    
T  34010292 ttaaatataattaaaagggtaatttggtcatttaatgttcaaaattaattttgattcaaactatccaaacaacatcaactcataagaaccacttttaaat 34010391  T
Q  250 taatgtatccaaacataa 267  Q
     | ||||| |||||||||    
T  34010392 gagtgtattcaaacataa 34010409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 275
Target Start/End: Original strand, 3750636 - 3750763
Alignment:
Q  148 attttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcactttta 246  Q
    ||||| |||||||||||| ||||| ||||||||||| | ||| ||||| ||||||||||||||  |||||||||  ||||| |||||| | ||| || ||    
T  3750636 atttttaatacaattaaaaggatagtttggtcattacacatt-aaaattaattttgatttaaactatccaaacaacatcaattcataagattcaattata 3750734  T
Q  247 cattaatgtatccaaacataaatcaattc 275  Q
        | |||||||||||||||||||||||    
T  3750735 ttaaagtgtatccaaacataaatcaattc 3750763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 275
Target Start/End: Original strand, 37639380 - 37639507
Alignment:
Q  149 ttttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttac 247  Q
    ||||||||||||||||| ||||| ||| ||||||| | ||| ||||| |||||||||| |||  |||||||||  |||||| || || |||||||||||     
T  37639380 ttttaaatacaattaaaaggatagtttagtcattacacatttaaaattaattttgattcaaactatccaaacaacatcaacccacaagaatcactttta- 37639478  T
Q  248 attaa-tgtatccaaacataaatcaattc 275  Q
    || || | | |||||||||||||||||||    
T  37639479 ataaagtttctccaaacataaatcaattc 37639507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 275
Target Start/End: Complemental strand, 47217685 - 47217573
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    |||||||| ||| |||||| ||  ||||||||||||||| ||| |||  |||||||||  |||||| ||| |||||||||||||    | || |||||||    
T  47217685 aaaggataatttagtcattgtacgttcaaaatcaattttaattcaaactatccaaacaacatcaacccatcaaaatcacttttaagcgagtgcatccaaa 47217586  T
Q  263 cataaatcaattc 275  Q
    |||||||||||||    
T  47217585 cataaatcaattc 47217573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 274
Target Start/End: Complemental strand, 36920325 - 36920211
Alignment:
Q  160 attaaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatcc 259  Q
    |||||| |||| | ||||||||||||||||  |||||||||||||| ||   | |||||||  ||||||||| || |||||| ||||  | || |||| |    
T  36920325 attaaaagataatatggtcattatatattcgcaatcaattttgattcaatgtacccaaacaacatcaactcaaaagaatcacctttaattaaacgtattc 36920226  T
Q  260 aaacataaatcaatt 274  Q
    |||||||||||||||    
T  36920225 aaacataaatcaatt 36920211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 275
Target Start/End: Complemental strand, 42752312 - 42752223
Alignment:
Q  186 attcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    ||||||||||||||||||| ||| | |||||||||  || || | |||| ||| | |||| | |||| ||||||||||||||||||||||    
T  42752312 attcaaaatcaattttgatctaagttatccaaacaacatgaatttataagaattatttttgctttaaggtatccaaacataaatcaattc 42752223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 43631823 - 43631756
Alignment:
Q  179 attatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcactttta 246  Q
    |||||| ||||| |||||||||||||| ||   ||||||||| |||||||||| || |||||||||||    
T  43631823 attatacattcacaatcaattttgattcaatatatccaaacaatatcaactcaaaagaatcactttta 43631756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 32205953 - 32206002
Alignment:
Q  226 aactcataaaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    ||||||||| |||||||||||  | | |||||||||||||||||||||||    
T  32205953 aactcataagaatcacttttaagtaagtgtatccaaacataaatcaattc 32206002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 275
Target Start/End: Complemental strand, 39634302 - 39634197
Alignment:
Q  170 attttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaat 269  Q
    |||||||| |||||  |||||||||||||||||||  || | |||||||||  |  || | |||| ||||||||||   ||||  |||||||||||||||    
T  39634302 attttggtaattatgcattcaaaatcaattttgatccaagttatccaaacaacaagaatttataagaatcacttttgttttaagttatccaaacataaat 39634203  T
Q  270 caattc 275  Q
    ||||||    
T  39634202 caattc 39634197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 40561768 - 40561735
Alignment:
Q  238 tcacttttacattaatgtatccaaacataaatca 271  Q
    |||||||||||| |||||||||||||||||||||    
T  40561768 tcacttttacatgaatgtatccaaacataaatca 40561735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 274
Target Start/End: Original strand, 2839263 - 2839367
Alignment:
Q  170 attttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaat 269  Q
    |||||||| |||||| ||||||||  |||||||| | |||  ||||||||| | | || | | || ||||||||||   |||||| ||||||||||||||    
T  2839263 attttggtaattatacattcaaaaataattttgactcaaagtatccaaacaatttaaattaacaagaatcacttttgacttaatgaatccaaacataaat 2839362  T
Q  270 caatt 274  Q
    |||||    
T  2839363 caatt 2839367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 11341978 - 11342030
Alignment:
Q  169 tattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacat 221  Q
    |||||| || |||||| |||||||| ||||||||||  |||||||||||||||    
T  11341978 tattttagtaattatacattcaaaaacaattttgatcaaaatcatccaaacat 11342030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 274
Target Start/End: Complemental strand, 46285477 - 46285373
Alignment:
Q  170 attttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaat 269  Q
    |||||||| |||||| |  |||||||||| || ||| |||  |||||||||| ||  | |  ||| ||||||||| | ||||||||||||||||||||||    
T  46285477 attttggtaattatacaagcaaaatcaatcttaattcaaactatccaaacatcatatattgctaagaatcactttcatattaatgtatccaaacataaat 46285378  T
Q  270 caatt 274  Q
     ||||    
T  46285377 taatt 46285373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 88 - 274
Target Start/End: Original strand, 5410529 - 5410718
Alignment:
Q  88 tgaagcaataaaaatccaaatatgataactttgaaataattatataa----aatgagatatttaattttaaatacaattaaa-ggatattttggtcatta 182  Q
    ||||||||||||||| ||  ||| |||| || |||||||||||||||    ||||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  5410529 tgaagcaataaaaattcatttataataagtt-gaaataattatataatgagaatgagatatttacttttaaatacaattaaaaggatagtttggtcatta 5410627  T
Q  183 tatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaatt 274  Q
     |||||||||||||||| ||||| |||  |||||||||  ||||| |||||| ||||||||||| | || ||||| ||||||||||||||||    
T  5410628 catattcaaaatcaattatgattcaaactatccaaacaacatcaagtcataagaatcactttta-agtagtgtattcaaacataaatcaatt 5410718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 134 - 275
Target Start/End: Complemental strand, 4369990 - 4369848
Alignment:
Q  134 aaatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcat 232  Q
    ||||| ||||| |||||||||||||||||||| ||||| ||||||||||| | ||| |||||||||||||||| ||   |||||||||  ||||||||||    
T  4369990 aaatgggatatataattttaaatacaattaaaaggataatttggtcattacacatttaaaatcaattttgattcaacctatccaaacaacatcaactcat 4369891  T
Q  233 aaaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    || |||||||||||  | |  ||| ||||||||||||||||||    
T  4369890 aagaatcacttttaagtgagggtacccaaacataaatcaattc 4369848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 275
Target Start/End: Original strand, 13055937 - 13056077
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    ||||||||||||||||||||| ||| ||||| || || ||| |||||||   |||||||||||||||| ||| |||  ||||||||| ||||||||||||    
T  13055937 aatgagatatttaattttaaacacagttaaaagggtaatttcgtcattacgcattcaaaatcaatttttattcaaactatccaaacaatatcaactcata 13056036  T
Q  234 aaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    ||||||||||||| || |  |||| |||||||||||||||||    
T  13056037 aaaatcactttta-ataagcgtattcaaacataaatcaattc 13056077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 274
Target Start/End: Original strand, 12468181 - 12468291
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    |||||||| |||||||||| || |||||||||||||||||||| |||  |||||||||  |||||||||||||||||||||||| |  | ||||||||||    
T  12468181 aaaggataatttggtcattgtacattcaaaatcaattttgattcaaactatccaaaca-aatcaactcataaaaatcacttttaaaaaagtgtatccaaa 12468279  T
Q  263 cataaatcaatt 274  Q
     |||||||||||    
T  12468280 tataaatcaatt 12468291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 153 - 275
Target Start/End: Complemental strand, 42850388 - 42850265
Alignment:
Q  153 aaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacatta 251  Q
    ||||||||||||| ||||| |||||||| || | ||||||||||||||||||| ||||  |||||||||  |||||||||||| |||||||||||    |    
T  42850388 aaatacaattaaaaggataatttggtcaatacacattcaaaatcaattttgatgtaaaatatccaaacaacatcaactcataagaatcacttttaaggaa 42850289  T
Q  252 atgtatccaaacataaatcaattc 275  Q
     |||||||||||||||||||||||    
T  42850288 gtgtatccaaacataaatcaattc 42850265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 151 - 267
Target Start/End: Original strand, 12247375 - 12247492
Alignment:
Q  151 ttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacat 249  Q
    ||||||||||||||| || || ||||||||||  || ||||||||||||||||||| ||||  ||||||||  |||||||||||||||||||||||| |     
T  12247375 ttaaatacaattaaaagggtaatttggtcatttaatgttcaaaatcaattttgattcaaattctccaaacaacatcaactcataaaaatcacttttaaac 12247474  T
Q  250 taatgtatccaaacataa 267  Q
     | |||||||||||||||    
T  12247475 aagtgtatccaaacataa 12247492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 275
Target Start/End: Complemental strand, 50977526 - 50977386
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    ||||||||||||||||||||| ||| ||||| || || ||| ||||||| | |||||||||||||||| ||| |||  ||||||||| |||| |||||||    
T  50977526 aatgagatatttaattttaaacacagttaaaagggtaatttagtcattacacattcaaaatcaatttttattcaaactatccaaacaatatctactcata 50977427  T
Q  234 aaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    |||||||||| || || |  ||||||||||||||| ||||||    
T  50977426 aaaatcacttgta-ataagcgtatccaaacataaaacaattc 50977386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 243
Target Start/End: Original strand, 10470486 - 10470638
Alignment:
Q  88 tgaagcaataaaaatccaaatatgataactttgaaataattatataaaatgagatatttaattttaaatacaattaaaggatattttggtcattatatat 187  Q
    ||||||||||||||| |||||||||||| ||  |||||||||| ||||||||  |||||| ||||||  ||| |  ||||||| ||| |||| |||| ||    
T  10470486 tgaagcaataaaaattcaaatatgataagttc-aaataattatctaaaatga--tatttatttttaataacattagaaggataatttagtcactatacat 10470582  T
Q  188 tcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcactt 243  Q
    |||||||||||||| ||| |||  |||||||||  |||||||||||| ||||||||    
T  10470583 tcaaaatcaattttaattcaaactatccaaacaacatcaactcataagaatcactt 10470638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 275
Target Start/End: Complemental strand, 7826541 - 7826400
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    |||| ||||| |||||||||||||||||||| |||||  |||||||||| | ||| |||||||||||||||| ||   |||||||||  ||||| |||||    
T  7826541 aatgggatatctaattttaaatacaattaaaaggataacttggtcattacacatttaaaatcaattttgattcaacctatccaaacaacatcaattcata 7826442  T
Q  234 aaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    | |||||||||||  | |  ||| ||||||||||||||||||    
T  7826441 agaatcacttttaagtgagggtacccaaacataaatcaattc 7826400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 267
Target Start/End: Original strand, 35536027 - 35536144
Alignment:
Q  151 ttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacat 249  Q
    ||||||||||||||| || || ||||||||||  || ||||||||||||||||||| |||| |||||||||  |||||||||||| ||||||||||| |     
T  35536027 ttaaatacaattaaaagggtaatttggtcatttaatgttcaaaatcaattttgattcaaattatccaaacaacatcaactcataagaatcacttttaaac 35536126  T
Q  250 taatgtatccaaacataa 267  Q
     | |||||| ||||||||    
T  35536127 gagtgtatctaaacataa 35536144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 275
Target Start/End: Complemental strand, 40229653 - 40229516
Alignment:
Q  139 agatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaa 237  Q
    ||||||||| ||| |||||| |||||| ||||| ||||||||||| |  ||||||||||||||||||| |||| |||||||||  ||||||||| || ||    
T  40229653 agatatttactttcaaatactattaaaaggatagtttggtcattacacgttcaaaatcaattttgattcaaattatccaaacaacatcaactcagaagaa 40229554  T
Q  238 tcacttttacattaatgtatccaaacataaatcaattc 275  Q
    |||| | ||    | |||||||||||||||||||||||    
T  40229553 tcacctgtaagaaagtgtatccaaacataaatcaattc 40229516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 275
Target Start/End: Complemental strand, 20800450 - 20800323
Alignment:
Q  149 ttttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttac 247  Q
    ||||||||||||||||| ||||| ||| ||||||||| ||||||||||||| |||||| |||  |||||||||  |||||| || |  |||||||||||     
T  20800450 ttttaaatacaattaaaaggataatttagtcattatacattcaaaatcaatattgattcaaactatccaaacaacatcaacccacatgaatcactttta- 20800352  T
Q  248 attaa-tgtatccaaacataaatcaattc 275  Q
    || || |||||||||||||||||||||||    
T  20800351 ataaagtgtatccaaacataaatcaattc 20800323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 25061221 - 25061305
Alignment:
Q  190 aaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaatt 274  Q
    |||||||||||||||| |||| |||||||||| ||||| | |||| |||||||||||  |||| |||||||||||||||||||||    
T  25061221 aaaatcaattttgattcaaattatccaaacatcatcaattgataagaatcacttttatgttaaggtatccaaacataaatcaatt 25061305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 275
Target Start/End: Original strand, 31223342 - 31223454
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    |||||||| ||||||||||| | |||||||||||||||| ||| |||  |||||||||  |||||||||||| |||||||| ||    | ||||||||||    
T  31223342 aaaggatagtttggtcattacacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataagaatcacttctattaaagtgtatccaaa 31223441  T
Q  263 cataaatcaattc 275  Q
    |||||||||||||    
T  31223442 cataaatcaattc 31223454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 275
Target Start/End: Complemental strand, 35569375 - 35569248
Alignment:
Q  149 ttttaaatacaattaaag-gatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttac 247  Q
    |||||||||||||||||  |||| ||| ||||||||| |||||||||||||||||||| |||  |||||||||  |||||| || |  |||||||||||     
T  35569375 ttttaaatacaattaaaatgatagtttagtcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcactttta- 35569277  T
Q  248 attaa-tgtatccaaacataaatcaattc 275  Q
    || || |||||||||||||||||||||||    
T  35569276 ataaagtgtatccaaacataaatcaattc 35569248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 267
Target Start/End: Complemental strand, 43729035 - 43728931
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    ||||| || ||||||||||  |||||||||||||||||||||| |||  |||||||||  |||||||||||| ||||||||||| || | | ||||||||    
T  43729035 aaagggtaatttggtcatttaatattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaataagtttatccaaa 43728936  T
Q  263 cataa 267  Q
    |||||    
T  43728935 cataa 43728931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 275
Target Start/End: Original strand, 15884201 - 15884307
Alignment:
Q  170 attttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcac-ttttacattaatgtatccaaacataaa 268  Q
    |||||||| |||||  |||||||||||||||||||  |||  |||||||||  || || | ||||||||||| |||||| ||| ||||||||||||||||    
T  15884201 attttggtaattatgcattcaaaatcaattttgatccaaactatccaaacaacatgaatttataaaaatcactttttactttattgtatccaaacataaa 15884300  T
Q  269 tcaattc 275  Q
    |||||||    
T  15884301 tcaattc 15884307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 31933684 - 31933772
Alignment:
Q  153 aaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatca 240  Q
    ||||||||||||| ||||| |||||||| || | ||||||||||||||||||| ||||  |||||||||  |||||||||||| |||||    
T  31933684 aaatacaattaaaaggataatttggtcaatacacattcaaaatcaattttgatgtaaaatatccaaacaacatcaactcataagaatca 31933772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 6464577 - 6464656
Alignment:
Q  164 aaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcactt 243  Q
    ||||||| ||| ||||||| | |||||||||||||||||||| |||  |||||||||  |||||||||||| ||||||||    
T  6464577 aaggataatttagtcattagacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcactt 6464656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 267
Target Start/End: Complemental strand, 11023498 - 11023383
Alignment:
Q  153 aaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacatta 251  Q
    ||||||||||||| || ||  ||||||||||   ||| |||||||||||||||| |||  | ||||||| ||||||||| ||||||| |||||||  | |    
T  11023498 aaatacaattaaaagggtaagttggtcattacccatttaaaatcaattttgattcaaactacccaaacaatatcaactcgtaaaaattacttttaattga 11023399  T
Q  252 atgtatccaaacataa 267  Q
    ||||||||||||||||    
T  11023398 atgtatccaaacataa 11023383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 45710018 - 45710097
Alignment:
Q  164 aaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcactt 243  Q
    ||||||| ||| ||||||| | |||||||||||||||||||| |||  |||||||||  |||||||||||| ||||||||    
T  45710018 aaggataatttagtcattagacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcactt 45710097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 11051497 - 11051411
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaaca 220  Q
    ||||||||||||  ||||||||| ||||||| ||||| ||||||||||| | |||||||||||||||| ||| |||  |||||||||    
T  11051497 aatgagatattttgttttaaatataattaaaaggataatttggtcattacacattcaaaatcaatttttattcaaactatccaaaca 11051411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 275
Target Start/End: Original strand, 48510847 - 48510988
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    ||||||||||||| ||||||||| ||| ||| ||||| |||| |||||| | | | |||||||||||||||  | |  || ||||||  ||||| |||||    
T  48510847 aatgagatatttacttttaaatataatcaaaaggatagtttgatcattacacacttaaaatcaattttgatacatactattcaaacaacatcaattcata 48510946  T
Q  234 aaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    | |||||||||||    | |||||||||||||||||||||||    
T  48510947 agaatcacttttaagcaagtgtatccaaacataaatcaattc 48510988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 275
Target Start/End: Original strand, 36205128 - 36205271
Alignment:
Q  133 aaaatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactca 231  Q
    |||||||| | |||| ||| ||||||||||||| || || ||||||||||| | |||||||||||||||||||| |||  |||||| ||  ||  ||||     
T  36205128 aaaatgaggtgtttactttaaaatacaattaaaaggttaatttggtcattaaacattcaaaatcaattttgattcaaactatccaagcaacattcactcg 36205227  T
Q  232 taaaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    ||| ||||||||||| || | | ||||||| || ||| ||||||    
T  36205228 taagaatcacttttaaataagtttatccaatcaaaaaccaattc 36205271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 267
Target Start/End: Original strand, 6166088 - 6166182
Alignment:
Q  173 ttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataa 267  Q
    ||||||||||   ||| |||||||||||||||| |||  | |||||||  |||||||| ||| ||||||||||| || | |||||||||||||||    
T  6166088 ttggtcattacccatttaaaatcaattttgattcaaactacccaaacaacatcaactcctaagaatcacttttaaatgagtgtatccaaacataa 6166182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 274
Target Start/End: Complemental strand, 23628877 - 23628752
Alignment:
Q  149 ttttaaatacaattaaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttaca 248  Q
    |||||||||||||||||    |||||| | ||||||  |||||||  |||||||||| ||| || |||||||  || || | |||| ||||| |||||      
T  23628877 ttttaaatacaattaaaacccattttgataattatactttcaaaagtaattttgattcaaaccacccaaacaacataaattgataagaatcaattttagg 23628778  T
Q  249 ttaatgtatccaaacataaatcaatt 274  Q
    ||| ||||||||||||||||||||||    
T  23628777 ttattgtatccaaacataaatcaatt 23628752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 25229975 - 25230055
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcactt 243  Q
    |||||||| ||||||||||| | | |||||||||||||| ||| |||  |||||||||  ||||||| |||| ||||||||    
T  25229975 aaaggataatttggtcattacacactcaaaatcaattttcattcaaactatccaaacaacatcaactaataagaatcactt 25230055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 31933638 - 31933670
Alignment:
Q  133 aaaatgagatatttaattttaaatacaattaaa 165  Q
    |||||||||||||||||||||||||||||||||    
T  31933638 aaaatgagatatttaattttaaatacaattaaa 31933670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 42850434 - 42850402
Alignment:
Q  133 aaaatgagatatttaattttaaatacaattaaa 165  Q
    |||||||||||||||||||||||||||||||||    
T  42850434 aaaatgagatatttaattttaaatacaattaaa 42850402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 274
Target Start/End: Complemental strand, 43730194 - 43730091
Alignment:
Q  171 ttttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatc 270  Q
    ||||||| ||||||  ||||||| |||||||||| | || ||||||||||  || || | |||| |||||||| | ||| || ||||||||||| |||||    
T  43730194 ttttggtaattataccttcaaaaacaattttgatctcaaccatccaaacaaaataaattaataagaatcacttatgcataaaggtatccaaacacaaatc 43730095  T
Q  271 aatt 274  Q
    ||||    
T  43730094 aatt 43730091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 1199819 - 1199907
Alignment:
Q  187 ttcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaa-tgtatccaaacataaatcaattc 275  Q
    ||||||||||||||||||| |||  |||||||||  |||||  || || |||||||| || || || |||||||||||||||||||||||    
T  1199819 ttcaaaatcaattttgattcaaactatccaaacaacatcaatccacaagaatcacttcta-ataaagtgtatccaaacataaatcaattc 1199907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 13931605 - 13931657
Alignment:
Q  177 tcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaact 229  Q
    |||||| |||||||||||||||||||||| |||  |||||||||  |||||||    
T  13931605 tcattacatattcaaaatcaattttgattcaaactatccaaacaacatcaact 13931657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 163 - 275
Target Start/End: Original strand, 8393 - 8505
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    |||||||| |||||||||| || |||||||||||||||||||| |||  |||||||||  |||||||||||||||||| ||||| |  | ||||||||||    
T  8393 aaaggataatttggtcattgtacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataaaaatcatttttaaaaaagtgtatccaaa 8492  T
Q  263 cataaatcaattc 275  Q
    |||||||||||||    
T  8493 cataaatcaattc 8505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 267
Target Start/End: Complemental strand, 7472843 - 7472724
Alignment:
Q  149 ttttaaatacaatta-aaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttac 247  Q
    |||||| |||||||| ||||||| |||||||||| || |||||||||||||||||||| |||  |||||||||  |||||||||||| |||||||||||     
T  7472843 ttttaattacaattacaaggataatttggtcattttacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaa 7472744  T
Q  248 attaatgtatccaaacataa 267  Q
    || | |||||||||||||||    
T  7472743 ataagtgtatccaaacataa 7472724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 171 - 275
Target Start/End: Original strand, 2213467 - 2213571
Alignment:
Q  171 ttttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatc 270  Q
    ||||||||||| || ||| |||||||||||||||| |||  ||||||||| |||||||| ||||||||||||||||  | | ||||||||||||||||||    
T  2213467 ttttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatc 2213566  T
Q  271 aattc 275  Q
    |||||    
T  2213567 aattc 2213571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 163 - 275
Target Start/End: Original strand, 7296108 - 7296220
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    |||||||| || ||||||||||||||||||||||||||||| |||||  ||||||| |  ||||| |||| | ||||||||||| || | ||||||||||    
T  7296108 aaaggataattcggtcattatatattcaaaatcaattttgacttaaactatccaaataacatcaagtcatgataatcacttttatatgagtgtatccaaa 7296207  T
Q  263 cataaatcaattc 275  Q
    |||||||||||||    
T  7296208 cataaatcaattc 7296220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 170 - 274
Target Start/End: Original strand, 18511062 - 18511166
Alignment:
Q  170 attttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaat 269  Q
    |||||||| |||||  ||||||||||||||||||||||||| |||||||||  ||||  | |||| ||||| ||||||||| ||||||||||||||||||    
T  18511062 attttggtaattatgcattcaaaatcaattttgatttaaattatccaaacaacatcactttataagaatcatttttacattgatgtatccaaacataaat 18511161  T
Q  270 caatt 274  Q
    |||||    
T  18511162 caatt 18511166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 172 - 275
Target Start/End: Complemental strand, 28127433 - 28127330
Alignment:
Q  172 tttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatca 271  Q
    |||||||||| || ||| |||||||||||||||| |||  ||||||||| |||||||| ||||||||||||||||  | | |||||||||||||||||||    
T  28127433 tttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatca 28127334  T
Q  272 attc 275  Q
    ||||    
T  28127333 attc 28127330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 241
Target Start/End: Original strand, 8170194 - 8170344
Alignment:
Q  88 tgaagcaataaaaatccaaatatgataactttgaaataattatataaaatgagatatttaattttaaatacaattaaaggatattttggtcattatatat 187  Q
    ||||||||||||||| |||||||||||| ||  |||||||||| ||||||||  |||||| ||||||  ||| |  ||||||| ||| ||||||||| ||    
T  8170194 tgaagcaataaaaattcaaatatgataagttc-aaataattatctaaaatga--tatttatttttaataacattagaaggataatttagtcattatacat 8170290  T
Q  188 tcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcac 241  Q
    |||||||||||||| ||| |||  |||||||||  |||||||||||| ||||||    
T  8170291 tcaaaatcaattttaattcaaactatccaaacaacatcaactcataagaatcac 8170344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 121 - 275
Target Start/End: Original strand, 28641550 - 28641707
Alignment:
Q  121 aaataattatataaaatgaga--tatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaa 217  Q
    |||||||||| ||||||||||  ||| |||||||||||||||||||| ||||| ||||||||||| | ||| |||||||||||| ||| ||   ||||||    
T  28641550 aaataattatctaaaatgagagatatctaattttaaatacaattaaaaggataatttggtcattacacatttaaaatcaattttaattcaacatatccaa 28641649  T
Q  218 acattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    |||  ||||||| |||| ||||||||||| || ||  || ||||| ||||||||||||    
T  28641650 acaacatcaacttataataatcacttttaaatgaagttacccaaatataaatcaattc 28641707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 151 - 274
Target Start/End: Complemental strand, 7295514 - 7295392
Alignment:
Q  151 ttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacat 249  Q
    |||||| |||||||| ||||| || ||||||||||||||||||||||| ||||| |||||  |||||||||  |||||||||| | ||||||||||| ||    
T  7295514 ttaaatgcaattaaaaggataattcggtcattatatattcaaaatcaagtttgacttaaactatccaaacaacatcaactcatgataatcacttttatat 7295415  T
Q  250 taatgtatccaaacataaatcaatt 274  Q
       ||||||||||||||||||||||    
T  7295414 --gtgtatccaaacataaatcaatt 7295392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 139 - 275
Target Start/End: Original strand, 36548128 - 36548264
Alignment:
Q  139 agatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaa 237  Q
    ||||||||| ||||||||| ||||||| ||||| ||| |||||| ||  ||||||||||||||| |||||||| |||||||||  |||||| ||||||||    
T  36548128 agatatttagttttaaatataattaaaaggataatttagtcattgtacgttcaaaatcaattttaatttaaattatccaaacaacatcaacccataaaaa 36548227  T
Q  238 tcacttttacattaatgtatccaaacataaatcaattc 275  Q
    ||| |||||  | |  ||||||||||||||||||||||    
T  36548228 tca-ttttaagtgagagtatccaaacataaatcaattc 36548264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 9988652 - 9988544
Alignment:
Q  167 gatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacata 266  Q
    |||| ||||||||||| | |||||||||||||||| ||| |||  |||||||||  |||||||||||  ||||||||||| || | ||||||||||||||    
T  9988652 gatagtttggtcattacacattcaaaatcaattttcattcaaactatccaaacaacatcaactcatatgaatcacttttaaataagtgtatccaaacata 9988553  T
Q  267 aatcaattc 275  Q
    |||||||||    
T  9988552 aatcaattc 9988544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 146 - 275
Target Start/End: Complemental strand, 25940414 - 25940284
Alignment:
Q  146 taattttaaatacaatta-aaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttt 244  Q
    |||| |||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| |||   ||||||||  |||| ||||||| ||||||||     
T  25940414 taatgttaaatgcaattagaaggataatttggtcattatatattcaaaatcaattttgattcaaactgtccaaacaacatcatctcataataatcacttc 25940315  T
Q  245 tacattaatgtatccaaacataaatcaattc 275  Q
    || |  | ||||| |||| ||||||||||||    
T  25940314 tatacgagtgtattcaaatataaatcaattc 25940284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 135 - 275
Target Start/End: Complemental strand, 26208113 - 26207972
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    ||||||||||||  ||||||||||||| ||| ||||| |||||||||| || ||| |||||||||||||||| | || |||||||||  |||||||  ||    
T  26208113 aatgagatatttgcttttaaatacaatcaaaaggatagtttggtcattgtacatttaaaatcaattttgattcatataatccaaacaacatcaacttgta 26208014  T
Q  234 aaaatcacttttacattaa-tgtatccaaacataaatcaattc 275  Q
    | ||||| ||||| ||||| |||||| ||||||||||||||||    
T  26208013 agaatcaatttta-attaagtgtatcaaaacataaatcaattc 26207972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 203
Target Start/End: Original strand, 2212690 - 2212814
Alignment:
Q  85 taatgaagcaataaaaa-tccaaatatgataactttgaaataattat-----ataaaatgagatatttaattttaaatacaatt-aaaggatattttggt 177  Q
    ||||||||||||||||| | |||||| |||||||| |||||||||||     ||||||||||||||||||||||||||| |||| |||||||| ||||||    
T  2212690 taatgaagcaataaaaaattcaaataagataactt-gaaataattatctaaaataaaatgagatatttaattttaaataaaattaaaaggataatttggt 2212788  T
Q  178 cattatatattcaaaatcaattttga 203  Q
    ||||  | ||| ||||||||||||||    
T  2212789 cattgcacatttaaaatcaattttga 2212814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 267
Target Start/End: Complemental strand, 5916411 - 5916292
Alignment:
Q  149 ttttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttac 247  Q
    ||||||||||||||||| ||||| ||| ||||||| | |||||||||||||||||||| |||  |||||||||  ||||||||| |  |||||||||||     
T  5916411 ttttaaatacaattaaaaggatagtttagtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaactcacatgaatcactttta- 5916313  T
Q  248 attaa-tgtatccaaacataa 267  Q
    || || |||||||||||||||    
T  5916312 ataaagtgtatccaaacataa 5916292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 267
Target Start/End: Original strand, 36312215 - 36312334
Alignment:
Q  149 ttttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttac 247  Q
    ||||||||||||||||| ||||| ||| ||||||| | |||||||||||||||||||| |||  |||||||||  ||||||||| |  |||||||||||     
T  36312215 ttttaaatacaattaaaaggatagtttagtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaactcacatgaatcactttta- 36312313  T
Q  248 attaa-tgtatccaaacataa 267  Q
    || || |||||||||||||||    
T  36312314 ataaagtgtatccaaacataa 36312334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 267
Target Start/End: Complemental strand, 39141615 - 39141520
Alignment:
Q  172 tttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataa 267  Q
    ||||||||||  || ||||||||||||||||||| |||  |||||||||  |||||||||||| ||||| ||||| || | |||||||||||||||    
T  39141615 tttggtcatttaatgttcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcatttttaaatgagtgtatccaaacataa 39141520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 275
Target Start/End: Complemental strand, 44619207 - 44619104
Alignment:
Q  172 tttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatca 271  Q
    |||||||||| || |||||||||| ||||| ||| |||  |||||||||  |||||||||||| ||||| ||||| |  | |||||||||||||||||||    
T  44619207 tttggtcattttacattcaaaatcgattttaattcaaactatccaaacaacatcaactcataataatcatttttaaacaagtgtatccaaacataaatca 44619108  T
Q  272 attc 275  Q
    ||||    
T  44619107 attc 44619104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 39106852 - 39106766
Alignment:
Q  135 aatgagatatttaattttaaatacaatt-aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaaca 220  Q
    ||||||||||||  |||| ||||||||| |||||||| |||||||||| |||||| |||||||||||||||| |||| ||| |||||    
T  39106852 aatgagatattttgtttttaatacaatttaaaggataatttggtcattgtatatttaaaatcaattttgattcaaattatctaaaca 39106766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 275
Target Start/End: Original strand, 2215216 - 2215317
Alignment:
Q  172 tttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatca 271  Q
    |||||||||| || |||||||||||||| | |||||||| |||||||||  ||||||||  |||||| | ||||| |  | |||||||||||||||||||    
T  2215216 tttggtcattttacattcaaaatcaattctaatttaaattatccaaacaacatcaactc--aaaaattatttttaaacaagtgtatccaaacataaatca 2215313  T
Q  272 attc 275  Q
    ||||    
T  2215314 attc 2215317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 274
Target Start/End: Original strand, 16467046 - 16467150
Alignment:
Q  170 attttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaat 269  Q
    |||||||| |||||| ||  ||||| ||||||||| ||||  ||||||||   |||||| ||||| ||||||||||||||||   |||||||||||||||    
T  16467046 attttggtaattatacatcaaaaattaattttgatctaaactatccaaactacatcaacccataagaatcacttttacattatcatatccaaacataaat 16467145  T
Q  270 caatt 274  Q
    |||||    
T  16467146 caatt 16467150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 268
Target Start/End: Original strand, 23358220 - 23358316
Alignment:
Q  172 tttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaa 268  Q
    |||||||||| || |||||||||||||||||||| |||  |||||||||  || ||||||| | ||||||||||| |  | ||||||||||||||||    
T  23358220 tttggtcattttacattcaaaatcaattttgattcaaactatccaaacaacattaactcatcacaatcacttttaaacaagtgtatccaaacataaa 23358316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 31562816 - 31562756
Alignment:
Q  186 attcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcactttta 246  Q
    |||||||||||||||||||| |||| ||||||||| ||| ||||||||| |||||||||||    
T  31562816 attcaaaatcaattttgattcaaattatccaaacaatataaactcataagaatcactttta 31562756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 14821117 - 14821196
Alignment:
Q  164 aaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcactt 243  Q
    ||||||| ||| ||||||| | |||||||||||||||||||| |||  |||||||||  |||||||||||| ||||||||    
T  14821117 aaggataatttagtcattagacattcaaaatcaattttgattcaaaatatccaaacaacatcaactcataagaatcactt 14821196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 267
Target Start/End: Original strand, 32501928 - 32502043
Alignment:
Q  153 aaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacatta 251  Q
    ||||||||||||| || ||  ||||||||||   ||| |||||||||||||||| |||  | ||||||| ||||||||| ||||||| |||||||  | |    
T  32501928 aaatacaattaaaagggtaagttggtcattacccatttaaaatcaattttgattcaaactacccaaacaatatcaactcgtaaaaattacttttaattga 32502027  T
Q  252 atgtatccaaacataa 267  Q
    ||||||||||||||||    
T  32502028 atgtatccaaacataa 32502043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 3853876 - 3853964
Alignment:
Q  186 attcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaatt 274  Q
    |||||||| ||||||||||| |||  |||||||||  ||  | | |||| ||||| |||||||| ||||||||||||||||||||||||    
T  3853876 attcaaaagcaattttgattcaaactatccaaacaacatagattgataagaatcaattttacatgaatgtatccaaacataaatcaatt 3853964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 274
Target Start/End: Complemental strand, 25748053 - 25747925
Alignment:
Q  146 taattttaaatacaattaaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcactttt 245  Q
    ||||||||||||||||||||    |||||| | ||||||  ||||||| ||||||||||| |||  | |||||||  || || | |||| ||||| ||||    
T  25748053 taattttaaatacaattaaaatccattttgataattatactttcaaaagcaattttgattcaaactacccaaacaacataaattgataagaatcaatttt 25747954  T
Q  246 acattaatgtatccaaacataaatcaatt 274  Q
    |  ||| ||||||||||||||||||||||    
T  25747953 aggttattgtatccaaacataaatcaatt 25747925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 275
Target Start/End: Original strand, 28261247 - 28261359
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    ||||||||  |||||||||||| ||| ||||| |||||||||| |||  || ||||||  |||||||||||| |||||||| ||  | |  |||||||||    
T  28261247 aaaggataagttggtcattatacatttaaaattaattttgattcaaactattcaaacaacatcaactcataagaatcacttctatgtgagagtatccaaa 28261346  T
Q  263 cataaatcaattc 275  Q
     ||||||||||||    
T  28261347 tataaatcaattc 28261359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 274
Target Start/End: Complemental strand, 43858360 - 43858256
Alignment:
Q  170 attttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaat 269  Q
    |||||||| |||||| |  |||||||||||||  || |||  ||||||||| ||| || | |||| ||||||||| ||| ||||| ||||||||||||||    
T  43858360 attttggtaattatacacccaaaatcaattttagttaaaactatccaaacaatatgaattgataagaatcactttcacaataatgcatccaaacataaat 43858261  T
Q  270 caatt 274  Q
    |||||    
T  43858260 caatt 43858256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 274
Target Start/End: Complemental strand, 3552993 - 3552890
Alignment:
Q  171 ttttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatc 270  Q
    ||||||| |||| | ||| || ||||||||||||| |||| ||||||||| ||| || | |||| ||| ||||  ||||||||||||||| ||||||| |    
T  3552993 ttttggtaattacacatttaagatcaattttgattcaaattatccaaacaatatgaaatgataagaattacttccacattaatgtatccatacataaaac 3552894  T
Q  271 aatt 274  Q
    ||||    
T  3552893 aatt 3552890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 45714814 - 45714767
Alignment:
Q  153 aaatacaattaaa-ggatattttggtcattatatattcaaaatcaatt 199  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  45714814 aaatacaattaaaaggataatttggtcattatatattcaaaatcaatt 45714767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 42516177 - 42516063
Alignment:
Q  121 aaataattatataaaatga----gatatttaattttaaatacaattaaag-gatattttggtcattatatattcaaaatcaattttgatttaaatcatcc 215  Q
    |||||||||| ||||||||    |||||||| ||| ||||| |||||||  |||| |||||| |||||| |||||||||||||||| ||| |||  ||||    
T  42516177 aaataattatctaaaatgaaaatgatatttagtttcaaatagaattaaaaagataatttggttattatacattcaaaatcaattttaattcaaactatcc 42516078  T
Q  216 aaacattatcaactc 230  Q
    |||||  ||||||||    
T  42516077 aaacaacatcaactc 42516063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 3602587 - 3602503
Alignment:
Q  190 aaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaatt 274  Q
    |||||||||||| ||| |||  |||||||||  || || | ||||||||||||||||  ||||| ||||||||||||| ||||||    
T  3602587 aaaatcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt 3602503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 1945166 - 1945082
Alignment:
Q  191 aaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaa-tgtatccaaacataaatcaattc 275  Q
    ||||||||||||||| |||  |||||||||  |||||| || |  ||||||||||| || || |||||||||||||||||||||||    
T  1945166 aaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcactttta-ataaagtgtatccaaacataaatcaattc 1945082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 27911386 - 27911471
Alignment:
Q  190 aaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    |||||||||||| |||||||  ||||||| |  |||||||   || ||||||||||| || | | |||||||||||||||||||||    
T  27911386 aaaatcaattttaatttaaagtatccaaataacatcaacttgaaataatcacttttaaatgagtatatccaaacataaatcaattc 27911471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 2213660 - 2213712
Alignment:
Q  223 atcaactcataaaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    |||||||||||| ||||||||||| || | |||||||||| | ||||||||||    
T  2213660 atcaactcataagaatcacttttaaataagtgtatccaaagacaaatcaattc 2213712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 31224693 - 31224745
Alignment:
Q  223 atcaactcataaaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    |||||||||||| |||||||||||    ||| |||||||||||||||||||||    
T  31224693 atcaactcataagaatcacttttagtaaaatatatccaaacataaatcaattc 31224745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 275
Target Start/End: Original strand, 40885168 - 40885281
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaa-tcacttttacattaatgtatccaa 261  Q
    |||||||| |||| |||||| |||||||||||||||||||||| |||  ||||||||| |||||||||||||||| ||||||||| |  | ||| |||||    
T  40885168 aaaggataatttgatcattacatattcaaaatcaattttgattcaaactatccaaacaatatcaactcataaaaactcacttttaaacaagtgtgtccaa 40885267  T
Q  262 acataaatcaattc 275  Q
    ||||||||||||||    
T  40885268 acataaatcaattc 40885281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 171 - 275
Target Start/End: Original strand, 3667820 - 3667924
Alignment:
Q  171 ttttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatc 270  Q
    ||||||||||| || ||| |||||||||||||||| |||  ||||||||| |||||||| ||||||||||||||||  | | ||||||||||||||||||    
T  3667820 ttttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatc 3667919  T
Q  271 aattc 275  Q
    |||||    
T  3667920 aattc 3667924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 196 - 275
Target Start/End: Complemental strand, 39988088 - 39988009
Alignment:
Q  196 aattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    |||||||||||||||||||||||||  |||||||||||| ||||||||||| || | |||||||||||||||||||||||    
T  39988088 aattttgatttaaatcatccaaacaacatcaactcataagaatcacttttaaataagtgtatccaaacataaatcaattc 39988009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 8049178 - 8049094
Alignment:
Q  190 aaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaatt 274  Q
    |||| ||||||||||||||||||||||||||  | |||||||||| ||||||||||| || | ||||||||||||||||||||||    
T  8049178 aaaagcaattttgatttaaatcatccaaacaacaacaactcataagaatcacttttaaataagtgtatccaaacataaatcaatt 8049094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 274
Target Start/End: Complemental strand, 9275651 - 9275527
Alignment:
Q  151 ttaaatacaattaaag-gatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacat 249  Q
    |||||||||||||||  |||| ||||||||||| | |||||||||||| ||| ||| ||||||||||||||  |||||||||||| ||||| |||||       
T  9275651 ttaaatacaattaaaaagataatttggtcattacacattcaaaatcaagtttcattcaaatcatccaaacaacatcaactcataagaatcaattttatta 9275552  T
Q  250 taatgtatccaaacataaatcaatt 274  Q
     | ||||||||||||||||||||||    
T  9275551 aagtgtatccaaacataaatcaatt 9275527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 275
Target Start/End: Original strand, 22482132 - 22482259
Alignment:
Q  149 ttttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttac 247  Q
    ||||||||||||||||| ||||| ||| ||||||||| |||||||||||||||||||| |||  |||||||||  |||||| || |  |||||||||||     
T  22482132 ttttaaatacaattaaaaggatagtttagtcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcactttta- 22482230  T
Q  248 attaa-tgtatccaaacataaatcaattc 275  Q
    || || |||||||||||||||||||||||    
T  22482231 ataaagtgtatccaaacataaatcaattc 22482259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 275
Target Start/End: Original strand, 35760155 - 35760259
Alignment:
Q  171 ttttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatc 270  Q
    ||||||||||| || ||| |||||||||||||||| |||  ||||||||| |||||||| |||||||||| |||||  | | ||||||||||||||||||    
T  35760155 ttttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcagttttaattgagtgtatccaaacataaatc 35760254  T
Q  271 aattc 275  Q
    |||||    
T  35760255 aattc 35760259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 149 - 267
Target Start/End: Original strand, 32454480 - 32454599
Alignment:
Q  149 ttttaaatacaatta-aaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttac 247  Q
    |||||| |||||||| ||||||| |||||||||| || ||||||||| |||||||||| |||  |||||||||  |||||||||||| |||||||||||     
T  32454480 ttttaattacaattacaaggataatttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaa 32454579  T
Q  248 attaatgtatccaaacataa 267  Q
    |  | |||||||||||||||    
T  32454580 acaagtgtatccaaacataa 32454599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 163 - 274
Target Start/End: Complemental strand, 40495511 - 40495401
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    |||||||| |||| ||||| || |||| |||||||||||||||||||  || ||||||  |||||||||||||||||||||||| |  | ||||||||||    
T  40495511 aaaggataatttgatcattgtacattccaaatcaattttgatttaaactattcaaacaa-atcaactcataaaaatcacttttaaaaaagtgtatccaaa 40495413  T
Q  263 cataaatcaatt 274  Q
    ||||||||||||    
T  40495412 cataaatcaatt 40495401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 172 - 275
Target Start/End: Complemental strand, 41740738 - 41740635
Alignment:
Q  172 tttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatca 271  Q
    |||||||||| || ||||||||||||||||||||||||  |||||||||  |||||||||||| ||||||||||| |  | ||||| |||||||||| ||    
T  41740738 tttggtcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaatcacttttaaacaagtgtattcaaacataaacca 41740639  T
Q  272 attc 275  Q
    ||||    
T  41740638 attc 41740635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 142 - 275
Target Start/End: Original strand, 41834828 - 41834962
Alignment:
Q  142 tatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatca 240  Q
    |||||| ||||||||||||||||| ||||| ||||||||||  | |||||||||||||||| ||| |||  |||||||||  ||||| || ||| |||||    
T  41834828 tatttacttttaaatacaattaaaaggataatttggtcattgcacattcaaaatcaattttcattcaaactatccaaacaacatcaattcgtaagaatca 41834927  T
Q  241 cttttacattaatgtatccaaacataaatcaattc 275  Q
    ||| ||    | |||||||||||||||||||||||    
T  41834928 cttctagtaaagtgtatccaaacataaatcaattc 41834962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 7386059 - 7385974
Alignment:
Q  190 aaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    |||| |||||||||||||||| |||||||||  |||||||||||| ||||||||||| || | |||||  ||||||||||||||||    
T  7386059 aaaagcaattttgatttaaattatccaaacaacatcaactcataagaatcacttttaaataagtgtatttaaacataaatcaattc 7385974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 151 - 267
Target Start/End: Complemental strand, 13253249 - 13253132
Alignment:
Q  151 ttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacat 249  Q
    ||||||| ||||||| || || ||||||||||  || ||||||||||||||||||| |||  || ||||||  |||||||||||| ||||||||||| ||    
T  13253249 ttaaatataattaaaagggtaatttggtcatttaatgttcaaaatcaattttgattcaaactattcaaacaacatcaactcataagaatcacttttaaat 13253150  T
Q  250 taatgtatccaaacataa 267  Q
     | |||||||||||||||    
T  13253149 gagtgtatccaaacataa 13253132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 275
Target Start/End: Original strand, 24045760 - 24045900
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    ||||||||||||| ||||||||  ||||||| ||||| ||| |||||| ||  ||||||||||||||| ||| |||| |||||||||  |||||| ||||    
T  24045760 aatgagatatttagttttaaatctaattaaaaggataatttagtcattgtacgttcaaaatcaattttaattcaaattatccaaacaacatcaacccata 24045859  T
Q  234 aaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    ||||||| |||||  | |  | ||||||||||||||||||||    
T  24045860 aaaatca-ttttaagtgagagcatccaaacataaatcaattc 24045900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 240
Target Start/End: Original strand, 7714818 - 7714975
Alignment:
Q  88 tgaagcaataaaaatccaaatatgataactttgaaataattatataaaa------tgagatatttaattttaaatacaattaaaggatattttggtcatt 181  Q
    ||||||||||||||| |||||||||||| ||  |||||||||| |||||      ||||||||||| ||||||  ||| | |||||||| ||| ||||||    
T  7714818 tgaagcaataaaaattcaaatatgataagttc-aaataattatctaaaatgaaaatgagatatttatttttaataacattaaaaggataatttagtcatt 7714916  T
Q  182 atatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatca 240  Q
    |||  ||||||||||||||| ||| |||  |||||||||  ||||||| |||| |||||    
T  7714917 atactttcaaaatcaattttaattcaaactatccaaacaacatcaacttataagaatca 7714975  T

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Target: chr5; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 273
Target Start/End: Complemental strand, 28869681 - 28869547
Alignment:
Q  139 agatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaa 237  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||||| | | || ||||| ||||| | | |||  |||||||||  |||||||||||| ||    
T  28869681 agatatttagttttaaatacaattaaaaggataatttggtcattacacactcgaaatctatttt-actcaaactatccaaacaacatcaactcataagaa 28869583  T
Q  238 tcacttttacattaatgtatccaaacataaatcaat 273  Q
    |||||||||  | | ||||| |||||||||||||||    
T  28869582 tcacttttaagtaagtgtattcaaacataaatcaat 28869547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 275
Target Start/End: Original strand, 4292102 - 4292219
Alignment:
Q  158 caattaaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaa-tgta 256  Q
    |||||||| ||||| |  ||||||| | ||||||||| |||||||||| |||| ||||||||| |||||||  | || |||||||| || ||||| ||||    
T  4292102 caattaaaagatatatcagtcattacacattcaaaattaattttgattcaaattatccaaacaatatcaaccaacaagaatcacttcta-attaagtgta 4292200  T
Q  257 tccaaacataaatcaattc 275  Q
    |||||||||||||||||||    
T  4292201 tccaaacataaatcaattc 4292219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 275
Target Start/End: Complemental strand, 16158619 - 16158507
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    |||| |||||||| |||||| | |||||||||||||||||||| |||||||||||| |  ||||| || ||| ||||||||||| |  | || |||||||    
T  16158619 aaagaatattttgatcattacacattcaaaatcaattttgattcaaatcatccaaagaacatcaattcctaagaatcacttttaaaaaagtgcatccaaa 16158520  T
Q  263 cataaatcaattc 275  Q
     |||||| |||||    
T  16158519 tataaattaattc 16158507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 40791212 - 40791119
Alignment:
Q  174 tggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaa-tgtatccaaacataa 267  Q
    ||||||||||| ||||| |||||||||||||| ||   ||||||||| |||||||||| || ||||||||||| |||||  ||||||||||||||    
T  40791212 tggtcattatacattcacaatcaattttgattcaatgtatccaaacaatatcaactcaaaagaatcactttta-attaagcgtatccaaacataa 40791119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 267
Target Start/End: Original strand, 42146277 - 42146370
Alignment:
Q  174 tggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaa-tgtatccaaacataa 267  Q
    ||||||||||| ||||| |||||||||||||| ||   ||||||||| |||||||||| || ||||||||||| |||||  ||||||||||||||    
T  42146277 tggtcattatacattcacaatcaattttgattcaatgtatccaaacaatatcaactcaaaagaatcactttta-attaagcgtatccaaacataa 42146370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 274
Target Start/End: Original strand, 7178722 - 7178847
Alignment:
Q  149 ttttaaatacaattaaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttaca 248  Q
    |||||||||||||||||    |||||||| ||||||  ||||||| ||||||||||| |||  | |||||||  || || | |||| ||||| |||||      
T  7178722 ttttaaatacaattaaaacccattttggtaattatactttcaaaagcaattttgattcaaactacccaaacaacataaattgataagaatcaattttagg 7178821  T
Q  249 ttaatgtatccaaacataaatcaatt 274  Q
    ||| ||||||||||||||||||||||    
T  7178822 ttattgtatccaaacataaatcaatt 7178847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 2430449 - 2430370
Alignment:
Q  164 aaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcactt 243  Q
    ||||||| ||| ||||||| | | |||||||||||||||||| |||  |||||||||  |||||||||||| ||||||||    
T  2430449 aaggataatttagtcattacacactcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcactt 2430370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 275
Target Start/End: Original strand, 32030645 - 32030784
Alignment:
Q  135 aatgagatatttaattttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcata 233  Q
    ||||||| ||||| |||||||||||| |||| ||||| ||| ||||||| |  ||||||||||||||||||| |||  || ||||||  |||||  ||||    
T  32030645 aatgagacatttacttttaaatacaactaaaaggatagtttagtcattacaccttcaaaatcaattttgattcaaactattcaaacaacatcaa--cata 32030742  T
Q  234 aaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    | ||||||||||  || | | |||| ||||| ||||||||||    
T  32030743 agaatcacttttgaataagtatatcaaaacaaaaatcaattc 32030784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 3060376 - 3060296
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttt 244  Q
    |||||||| |||||||| || | |||||||||||||||||||| |||  |||||||||  || ||||||||| |||||||||    
T  3060376 aaaggataatttggtcaatacacattcaaaatcaattttgattcaaactatccaaacaacat-aactcataagaatcacttt 3060296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 275
Target Start/End: Original strand, 27021086 - 27021198
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaa-atcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaa 261  Q
    |||||||| ||| ||||||||| |||||||||||||||||||| ||  | |||||||||  |||||||  ||| |||||||||||  | | | || ||||    
T  27021086 aaaggataatttcgtcattatacattcaaaatcaattttgattcaatcttatccaaacaacatcaacttctaagaatcacttttaagtgagtata-ccaa 27021184  T
Q  262 acataaatcaattc 275  Q
    ||||||||||||||    
T  27021185 acataaatcaattc 27021198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 5710511 - 5710428
Alignment:
Q  191 aaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    ||||||||||| ||| |||  ||||||||| |||| ||||||||||||||||| || || |  ||||||||||||||| ||||||    
T  5710511 aaatcaatttttattcaaactatccaaacaatatctactcataaaaatcacttgta-ataagcgtatccaaacataaagcaattc 5710428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 246
Target Start/End: Complemental strand, 2694906 - 2694831
Alignment:
Q  171 ttttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcactttta 246  Q
    ||||||| |||| | | |||||||||||||||||| |||| || ||||||| ||||| | |||| |||||||||||    
T  2694906 ttttggtaattacacactcaaaatcaattttgattcaaattatacaaacatcatcaattgataagaatcactttta 2694831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 113
Target Start/End: Complemental strand, 9275776 - 9275748
Alignment:
Q  85 taatgaagcaataaaaatccaaatatgat 113  Q
    |||||||||||||||||||||||||||||    
T  9275776 taatgaagcaataaaaatccaaatatgat 9275748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 10058056 - 10058144
Alignment:
Q  187 ttcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatcaattc 275  Q
    ||||||||||||||| ||| |||  |||||||||  ||||| || ||| |||||||| ||    | |||||||||||||||||||||||    
T  10058056 ttcaaaatcaattttcattcaaactatccaaacaacatcaattcgtaagaatcacttctagtaaagtgtatccaaacataaatcaattc 10058144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 163 - 275
Target Start/End: Original strand, 253072 - 253184
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    ||||||||  ||||||||||||||||||||||||||||||||| ||   |||||||||  || ||||||||| |||||||||||  | || |||||||||    
T  253072 aaaggataagttggtcattatatattcaaaatcaattttgattcaatctatccaaacaacattaactcataagaatcacttttaactgaaggtatccaaa 253171  T
Q  263 cataaatcaattc 275  Q
    |||||||||||||    
T  253172 cataaatcaattc 253184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 275
Target Start/End: Complemental strand, 2197 - 2072
Alignment:
Q  151 ttaaatacaattaaa-ggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacat 249  Q
    |||||| |||||||| ||||| || |||| |||||||||||||||||||||||| |||||  |||||||||  |||||  ||| | ||||||||||| ||    
T  2197 ttaaatccaattaaaaggataattcggtctttatatattcaaaatcaattttgacttaaactatccaaacaacatcaagccatgataatcacttttatat 2098  T
Q  250 taatgtatccaaacataaatcaattc 275  Q
     | || ||||||||||||||||||||    
T  2097 gagtgcatccaaacataaatcaattc 2072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 170 - 274
Target Start/End: Original strand, 46714 - 46818
Alignment:
Q  170 attttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaat 269  Q
    |||||||| |||||| || |||||||||||||||||| ||  |||||||||  || || | ||||||||||||||||| ||||| ||||||||||||||     
T  46714 attttggtaattatacatccaaaatcaattttgatttgaactatccaaacaacatgaattgataaaaatcacttttactttaatatatccaaacataaac 46813  T
Q  270 caatt 274  Q
    |||||    
T  46814 caatt 46818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 266
Target Start/End: Original strand, 8977 - 9158
Alignment:
Q  90 aagcaataaaaatccaaatatgataactttgaaataattatataaaa------tgagatatttaattttaaatacaattaaaggatattttggtcattat 183  Q
    ||||||||||||| |||||||||||| ||  |||||||||| |||||      |||||||||||  |||||  ||| | |||||||| ||| ||||||||    
T  8977 aagcaataaaaattcaaatatgataagttc-aaataattatctaaaatgaaaatgagatatttatatttaataacattaaaaggataatttagtcattat 9075  T
Q  184 atattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacata 266  Q
    | |||||||||||||||| ||| |||  |||||||||  ||| |||||||| ||||||||| |  | | ||||||||||||||    
T  9076 acattcaaaatcaattttaattcaaactatccaaacaacatctactcataagaatcactttcaagtgagtgtatccaaacata 9158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 274
Target Start/End: Complemental strand, 138657 - 138554
Alignment:
Q  171 ttttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaacataaatc 270  Q
    ||||||| |||| | ||| ||||||||||||||||||||| ||| |||| ||||  | | |||| |||||||||||  |||| |||||||||||||||||    
T  138657 ttttggtaattacacatttaaaatcaattttgatttaaattatctaaactttatggattgataagaatcacttttatgttaaggtatccaaacataaatc 138558  T
Q  271 aatt 274  Q
    ||||    
T  138557 aatt 138554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 6002 - 5941
Alignment:
Q  149 ttttaaatacaattaaaggatattttggtcattatatattcaaaatcaattttgatttaaat 210  Q
    |||||||||||||||||||||| ||| ||||||| | |||||||||||||||||||| ||||    
T  6002 ttttaaatacaattaaaggatagtttagtcattacacattcaaaatcaattttgattcaaat 5941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0983 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 275
Target Start/End: Complemental strand, 2425 - 2313
Alignment:
Q  163 aaaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcacttttacattaatgtatccaaa 262  Q
    |||||||| ||||||||||| |||| ||||||||||||||||| |||  ||| |||||   ||||||  |||||| |||||||| |  | ||| ||||||    
T  2425 aaaggataatttggtcattacatatccaaaatcaattttgattcaaactatctaaacaacgtcaacttgtaaaaaccacttttaaacaagtgtgtccaaa 2326  T
Q  263 cataaatcaattc 275  Q
    |||||||||||||    
T  2325 cataaatcaattc 2313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 29278 - 29199
Alignment:
Q  164 aaggatattttggtcattatatattcaaaatcaattttgatttaaatcatccaaacattatcaactcataaaaatcactt 243  Q
    ||||||| ||| ||||||| | |||||||||||||||||||| |||  |||||||||  ||||| |||||| ||| ||||    
T  29278 aaggataatttagtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaattcataagaataactt 29199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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