View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2838_low_13 (Length: 247)
Name: NF2838_low_13
Description: NF2838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2838_low_13 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 27206370 - 27206141
Alignment:
| Q |
18 |
caatcttcagctgaagcagaatatttggcagctggtttggctacacaacaatcattgtggttgagaagaatacttgaagatatcggagaaaagcaagaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27206370 |
caatcttcagctgaagcagaatatttggcagctggtttggctacacaacaatcattgtggttgagaagaatacttgaagatatcggagaaaagcaagaag |
27206271 |
T |
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| Q |
118 |
aaagtctgctgcttcactgtgacaataaatcagcaatagccatggcgaagaatccagttttccacagtcgaacaagacatattaatataaagcaccactt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27206270 |
aaagtctgctgcttcactgtgacaataaatcagcaatagccatggcgaagaatccagttttccacagtcgaacaagacatattaatataaagcaccactt |
27206171 |
T |
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| Q |
218 |
cattcgaagtgtgatcgaagatggcgatgt |
247 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
27206170 |
cattcgaagtgtgatcgaagatggcgatgt |
27206141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 26897957 - 26897728
Alignment:
| Q |
18 |
caatcttcagctgaagcagaatatttggcagctggtttggctacacaacaatcattgtggttgagaagaatacttgaagatatcggagaaaagcaagaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26897957 |
caatcttcagctgaagcagaatatttggcagctggtttggctacacaacaatcattgtggttgagaagaatacttgaagatatcggagaaaagcaagaag |
26897858 |
T |
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| Q |
118 |
aaagtctgctgcttcactgtgacaataaatcagcaatagccatggcgaagaatccagttttccacagtcgaacaagacatattaatataaagcaccactt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26897857 |
aaagtctgctgcttcactgtgacaataaatcagcaatagccatggcgaagaatccagttttccacagtcgaacaagacatattaatataaagcaccactt |
26897758 |
T |
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| Q |
218 |
cattcgaagtgtgatcgaagatggcgatgt |
247 |
Q |
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| T |
26897757 |
cattcgaagtgtgatcgaagatggcgatgt |
26897728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 23678783 - 23679012
Alignment:
| Q |
18 |
caatcttcagctgaagcagaatatttggcagctggtttggctacacaacaatcattgtggttgagaagaatacttgaagatatcggagaaaagcaagaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23678783 |
caatcttcagctgaagcagaatatttggcagctggtttggctacacaacaatcattgtggttgagaagaatacttgaagatatcggagaaaagcaagaag |
23678882 |
T |
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| Q |
118 |
aaagtctgctgcttcactgtgacaataaatcagcaatagccatggcgaagaatccagttttccacagtcgaacaagacatattaatataaagcaccactt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23678883 |
aaagtctgctgcttcactgtgacaataaatcagcaatagccatggcgaagaatccagttttccacagtcgaacaagacatattaatataaagcaccactt |
23678982 |
T |
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| Q |
218 |
cattcgaagtgtgatcgaagatggcgatgt |
247 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
23678983 |
cattcgaagtgtgatcgaagatggcgatgt |
23679012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 24051059 - 24051288
Alignment:
| Q |
18 |
caatcttcagctgaagcagaatatttggcagctggtttggctacacaacaatcattgtggttgagaagaatacttgaagatatcggagaaaagcaagaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24051059 |
caatcttcagctgaagcagaatatttggcagctggtttggctacacaacaatcattgtggttgagaagaatacttgaagatatcggagaaaagcaagaag |
24051158 |
T |
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| Q |
118 |
aaagtctgctgcttcactgtgacaataaatcagcaatagccatggcgaagaatccagttttccacagtcgaacaagacatattaatataaagcaccactt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24051159 |
aaagtctgctgcttcactgtgacaataaatcagcaatagccatggcgaagaatccagttttccacagtcgaacaagacatattaatataaagcaccactt |
24051258 |
T |
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| Q |
218 |
cattcgaagtgtgatcgaagatggcgatgt |
247 |
Q |
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| T |
24051259 |
cattcgaagtgtgatcgaagatggcgatgt |
24051288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 26410669 - 26410898
Alignment:
| Q |
18 |
caatcttcagctgaagcagaatatttggcagctggtttggctacacaacaatcattgtggttgagaagaatacttgaagatatcggagaaaagcaagaag |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26410669 |
caatcttcaactgaagcagaatatttggcagctggtttggctacacaacaatcattgtggttgagaagaatacttgaagatatcggagaaaagcaagaag |
26410768 |
T |
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| Q |
118 |
aaagtctgctgcttcactgtgacaataaatcagcaatagccatggcgaagaatccagttttccacagtcgaacaagacatattaatataaagcaccactt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26410769 |
aaagtctgctgcttcactgtgacaataaatcagcaatagccatggcgaagaatccagttttccacagtcgaacaagacatattaatataaagcaccactt |
26410868 |
T |
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| Q |
218 |
cattcgaagtgtgatcgaagatggcgatgt |
247 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
26410869 |
cattcgaagtgtgatcgaagatggcgatgt |
26410898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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