View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2838_low_15 (Length: 237)

Name: NF2838_low_15
Description: NF2838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2838_low_15
NF2838_low_15
[»] chr4 (12 HSPs)
chr4 (19-221)||(3187511-3187713)
chr4 (86-151)||(21355926-21355991)
chr4 (86-144)||(21604485-21604543)
chr4 (86-144)||(46164368-46164426)
chr4 (86-144)||(47825967-47826025)
chr4 (86-146)||(14799997-14800057)
chr4 (86-144)||(8432982-8433040)
chr4 (86-152)||(23218214-23218280)
chr4 (86-152)||(45144031-45144097)
chr4 (86-152)||(45152800-45152866)
chr4 (86-151)||(13740247-13740312)
chr4 (86-142)||(54785192-54785248)
[»] chr1 (5 HSPs)
chr1 (28-209)||(52801478-52801659)
chr1 (86-151)||(17480982-17481047)
chr1 (86-144)||(29599253-29599311)
chr1 (86-144)||(324738-324796)
chr1 (86-144)||(26014526-26014584)
[»] chr5 (7 HSPs)
chr5 (86-198)||(23737941-23738048)
chr5 (86-198)||(19209065-19209172)
chr5 (86-144)||(32863703-32863761)
chr5 (86-198)||(43300233-43300340)
chr5 (87-142)||(22273148-22273203)
chr5 (86-144)||(10572762-10572820)
chr5 (86-151)||(3174223-3174288)
[»] chr8 (10 HSPs)
chr8 (86-146)||(42808726-42808786)
chr8 (94-198)||(43916168-43916267)
chr8 (86-144)||(22432293-22432351)
chr8 (86-144)||(29182577-29182635)
chr8 (86-139)||(33360436-33360489)
chr8 (86-152)||(1668164-1668230)
chr8 (86-152)||(16658879-16658945)
chr8 (86-152)||(38521220-38521286)
chr8 (91-144)||(780364-780417)
chr8 (86-151)||(22014894-22014959)
[»] chr3 (5 HSPs)
chr3 (87-142)||(40923016-40923071)
chr3 (86-144)||(9456473-9456531)
chr3 (86-152)||(21239494-21239560)
chr3 (87-142)||(2733833-2733888)
chr3 (86-152)||(52893490-52893556)
[»] chr7 (4 HSPs)
chr7 (86-144)||(6472246-6472304)
chr7 (86-144)||(9371866-9371924)
chr7 (86-144)||(21358024-21358082)
chr7 (86-151)||(44660368-44660433)
[»] chr2 (2 HSPs)
chr2 (86-144)||(25697569-25697627)
chr2 (86-152)||(3935366-3935432)
[»] scaffold0005 (1 HSPs)
scaffold0005 (86-146)||(39670-39730)
[»] chr6 (2 HSPs)
chr6 (87-142)||(7171087-7171142)
chr6 (91-144)||(32397297-32397350)
[»] scaffold0393 (1 HSPs)
scaffold0393 (86-151)||(11164-11229)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 3187713 - 3187511
Alignment:
Q  19 tgaattgaacatcttctgtgttatctccatctctctccaaaaaccctcatttaggtaatgtgaaaattgaaattgaatgtattttcctttaaatctgatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3187713 tgaattgaacatcttctgtgttatctccatctctctccaaaaaccctaatttaggtaatgtgaaaattgaaattgaatgtattttcctttaaatctgatt 3187614  T
Q  119 cttctttgatgactacatgttctttaattgattgattgccatcagttttttcatctattgttgttaaacctagttgattacattaaaagaagaatgtcag 218  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3187613 cttctttgatgattacatgttctttaattgattgattgccatcagttttttcatctattgttgttaaacctagttgattgcattaaaagaagaatgtcag 3187514  T
Q  219 tat 221  Q
    |||    
T  3187513 tat 3187511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 21355926 - 21355991
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgatt 151  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| ||||||||||||| ||||||    
T  21355926 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttctttagttgatt 21355991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 21604485 - 21604543
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 144  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  21604485 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 21604543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 46164426 - 46164368
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 144  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  46164426 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 46164368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 47825967 - 47826025
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 144  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  47825967 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 47826025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 14800057 - 14799997
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaat 146  Q
    ||||||| |||||||||||||| |||| ||||| |||| |||||| ||| |||||||||||    
T  14800057 tgaaattaaatgtattttccttcaaatatgattattctctgatgattacgtgttctttaat 14799997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 8433040 - 8432982
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 144  Q
    |||||||||||||  ||||||| || |||||||||  |||||||| |||||||||||||    
T  8433040 tgaaattgaatgttatttccttcaattctgattctgatttgatgattacatgttcttta 8432982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 23218280 - 23218214
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 152  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  23218280 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattg 23218214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 45144031 - 45144097
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 152  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  45144031 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattg 45144097  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 45152800 - 45152866
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 152  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  45152800 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattg 45152866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 13740312 - 13740247
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgatt 151  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| ||||||    
T  13740312 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgatt 13740247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 54785248 - 54785192
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctt 142  Q
    |||||||||||||| ||||||| || | |||||||  |||||||| |||||||||||    
T  54785248 tgaaattgaatgtaatttccttcaattatgattctgatttgatgattacatgttctt 54785192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 28 - 209
Target Start/End: Complemental strand, 52801659 - 52801478
Alignment:
Q  28 catcttctgtgttatctccatctctctccaaaaaccctcatttaggtaatgtgaaaattgaaattgaatgtattttcctttaaatctgattcttctttga 127  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  52801659 catcttctgtgttatctccatctctctccaaaaaccctaatttaggtaatgtgaaaattgaaattgaatgtatcttcctttaaatctgattcttctctga 52801560  T
Q  128 tgactacatgttctttaattgattgattgccatcagttttttcatctattgttgttaaacctagttgattacattaaaagaa 209  Q
    ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52801559 tgattatatgttctttaattgattgattgccatcagttttttcatctattgttgttaaacctagttgattacattaaaagaa 52801478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 17481047 - 17480982
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgatt 151  Q
    |||||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||| |||||||    
T  17481047 tgaaattgaatgtattttccttcaaatatgattattctttgatgattacatgttctttgattgatt 17480982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 29599311 - 29599253
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 144  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  29599311 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 29599253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 324738 - 324796
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 144  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| || ||||||||||    
T  324738 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattagatgttcttta 324796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 26014526 - 26014584
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 144  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||| ||||    
T  26014526 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttattta 26014584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 23737941 - 23738048
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattgattgccatcagttttttcatctattgttgttaa 185  Q
    |||||||||||||| ||||||| ||||||||||||||||| |||| |||||||||||||     ||||||||||| || |||| ||||| ||||||||||    
T  23737941 tgaaattgaatgtaatttccttcaaatctgattcttctttaatgattacatgttcttta----gttgattgccatgag-ttttccatctgttgttgttaa 23738035  T
Q  186 acctagttgatta 198  Q
    |||||||||||||    
T  23738036 acctagttgatta 23738048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 19209172 - 19209065
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattgattgccatcagttttttcatctattgttgttaa 185  Q
    |||||||||||||| ||||||| |||||||||||| |||| |||| |||||||||||||     ||||||||||| || |||| ||||| ||||||||||    
T  19209172 tgaaattgaatgtaatttccttcaaatctgattctgctttaatgattacatgttcttta----gttgattgccatgag-ttttccatctgttgttgttaa 19209078  T
Q  186 acctagttgatta 198  Q
    |||||||||||||    
T  19209077 acctagttgatta 19209065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 32863703 - 32863761
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 144  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  32863703 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 32863761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 43300233 - 43300340
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattgattgccatcagttttttcatctattgttgttaa 185  Q
    |||||||||||||| |||| || || ||||||| |||||| |||| |||||||||||   ||| |||||| | || || |||| ||||| ||||||||||    
T  43300233 tgaaattgaatgtaatttcgttcaattctgatttttctttaatgattacatgttctt---ttg-ttgatttcaatgag-ttttccatctgttgttgttaa 43300327  T
Q  186 acctagttgatta 198  Q
    |||||||||||||    
T  43300328 acctagttgatta 43300340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 22273203 - 22273148
Alignment:
Q  87 gaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctt 142  Q
    |||||||||| |||||||||| |||| ||||| |||| |||||| |||||||||||    
T  22273203 gaaattgaatctattttccttcaaatatgattattctctgatgattacatgttctt 22273148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 10572762 - 10572820
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 144  Q
    |||||||||||||| ||||||| || | |||||||  |||||||| |||||||||||||    
T  10572762 tgaaattgaatgtaatttccttcaattgtgattctgatttgatgattacatgttcttta 10572820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 3174223 - 3174288
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgatt 151  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| ||||||    
T  3174223 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgatt 3174288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 42808726 - 42808786
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaat 146  Q
    |||||||||||||||||||||| |||| ||||| |||| |||||| |||||||||||||||    
T  42808726 tgaaattgaatgtattttccttcaaatatgattattctctgatgattacatgttctttaat 42808786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 198
Target Start/End: Original strand, 43916168 - 43916267
Alignment:
Q  94 aatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattgattgccatcagttttttcatctattgttgttaaacctagtt 193  Q
    |||||| ||||||| ||||||||||||||||| | || | |||||| |||| |||||||    |||| ||||||  ||||| ||||||||||||||||||    
T  43916168 aatgtaatttccttcaaatctgattcttctttaacgattgcatgttatttagttgattg----ccatgagttttc-catctgttgttgttaaacctagtt 43916262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 22432351 - 22432293
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 144  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  22432351 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 22432293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 29182635 - 29182577
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 144  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  29182635 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 29182577  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 33360436 - 33360489
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgtt 139  Q
    |||||||||||||||||||||| |||| ||||| |||| |||||| ||||||||    
T  33360436 tgaaattgaatgtattttccttcaaatatgattattctctgatgattacatgtt 33360489  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 1668164 - 1668230
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 152  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  1668164 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattg 1668230  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 16658879 - 16658945
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 152  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  16658879 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattg 16658945  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 38521286 - 38521220
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 152  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  38521286 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattg 38521220  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 780417 - 780364
Alignment:
Q  91 ttgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 144  Q
    ||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  780417 ttgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 780364  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 22014894 - 22014959
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgatt 151  Q
    |||||||||||||| ||||||| || | ||||| || |||||||| ||||| ||||||| ||||||    
T  22014894 tgaaattgaatgtaatttccttcaattatgattattgtttgatgattacatattctttagttgatt 22014959  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 40923016 - 40923071
Alignment:
Q  87 gaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctt 142  Q
    ||||||||||||||||||||| |||| ||||| |||| |||||| |||||||||||    
T  40923016 gaaattgaatgtattttccttcaaatatgattattctctgatgattacatgttctt 40923071  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 9456473 - 9456531
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 144  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  9456473 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 9456531  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 21239494 - 21239560
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 152  Q
    |||||||||||||| ||||||| || ||||||| |  |||||||| ||||||||||||| |||||||    
T  21239494 tgaaattgaatgtaatttccttcaattctgattatgatttgatgattacatgttctttagttgattg 21239560  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 2733833 - 2733888
Alignment:
Q  87 gaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctt 142  Q
    |||||||||| |||||||||| |||| ||||| |||| |||||| |||||||||||    
T  2733833 gaaattgaatctattttccttcaaatatgattattctctgatgattacatgttctt 2733888  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 52893490 - 52893556
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 152  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  52893490 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgattg 52893556  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 6472304 - 6472246
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 144  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  6472304 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 6472246  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 9371866 - 9371924
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 144  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  9371866 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 9371924  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 21358082 - 21358024
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 144  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  21358082 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 21358024  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 44660368 - 44660433
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgatt 151  Q
    |||||||||||||| |||| || || ||||||| |||||| |||| ||||||||||||| ||||||    
T  44660368 tgaaattgaatgtaatttcgttcaattctgatttttctttaatgattacatgttctttagttgatt 44660433  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 25697627 - 25697569
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 144  Q
    |||||||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  25697627 tgaaattgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 25697569  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 3935432 - 3935366
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgattg 152  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| |||||||    
T  3935432 tgaaattgaatgtaatttccttcaattatgattataatttgatgattacatgttctttagttgattg 3935366  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 39670 - 39730
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaat 146  Q
    ||||||| |||||||||||||| |||| ||||| |||| |||||| ||| |||||||||||    
T  39670 tgaaattaaatgtattttccttcaaatatgattattctctgatgattacgtgttctttaat 39730  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 7171087 - 7171142
Alignment:
Q  87 gaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctt 142  Q
    |||||||||| |||||||||| |||| ||||| |||| |||||| |||||||||||    
T  7171087 gaaattgaatctattttccttcaaatatgattattctctgatgattacatgttctt 7171142  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 32397297 - 32397350
Alignment:
Q  91 ttgaatgtattttcctttaaatctgattcttctttgatgactacatgttcttta 144  Q
    ||||||||| ||||||| || |||||||||  |||||||| |||||||||||||    
T  32397297 ttgaatgtaatttccttcaattctgattctgatttgatgattacatgttcttta 32397350  T

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Target: scaffold0393 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 11229 - 11164
Alignment:
Q  86 tgaaattgaatgtattttcctttaaatctgattcttctttgatgactacatgttctttaattgatt 151  Q
    |||||||||||||| ||||||| || | ||||| |  |||||||| ||||||||||||| ||||||    
T  11229 tgaaattgaatgtaatttccttcaattatgattatgatttgatgattacatgttctttagttgatt 11164  T

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