View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2838_low_3 (Length: 851)
Name: NF2838_low_3
Description: NF2838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2838_low_3 |
 | |
|
| [»] chr3 (7 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 699; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 17 - 851
Target Start/End: Original strand, 53499557 - 53500374
Alignment:
| Q |
17 |
cagtgttggtgtaaattgcaccgccaaatgtctccatttcactttttgtaccctttatgacaggaacggccaaatactcttcgtatatacacctatataa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
53499557 |
cagtgttggtgtaaattgcaccgccaaatgtctccatttcactttttgtaccctttatgacaggaacggccaaatactcttcgtatatacgcctatataa |
53499656 |
T |
|
| Q |
117 |
ttccaatatctcaagagcctgaaacaataacagtttagagtattttgaaaaacaatataagagatgaccaatctccgtgcttgggtggaaaatatgaaca |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
53499657 |
ttccaatatctcaagagcctgaaacaataacagtttagagtattttgaaaaacaatataagagttgaccaatctccgtgcttgggtggaaaatatgaaca |
53499756 |
T |
|
| Q |
217 |
tgttattagtattagtaaactgtatgcaccagaagcaaaaaaggaagtccataactaatttaagttaaataaaaccacaaggtggtgactaaaaatgatt |
316 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53499757 |
tgtta---gtattagtaaattgtatgcaccagaagcaaaaaaggaagtccataactaatttaagttaaataaaaccacaaggtggtgactaaaaatgatt |
53499853 |
T |
|
| Q |
317 |
ttttaaaatatcaaattacaaaggaaattgttcacaaagactcaattacagatgccaaaaatgcatatagtaaggcagattcctaaaataactacttgat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53499854 |
ttttaaaatatcaaattacaaaggaaattgttcacaaagactca-ttacagatgccaaaaatgcatatagtaaggcagattcctaaaataactacttgat |
53499952 |
T |
|
| Q |
417 |
ggaatacctctgcatgtgcttcatcctctgttgcaaaagcaccgtgaccttcttgccaaagaaactcacgacccctgcaatcaaaatttgtataagcacc |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
53499953 |
ggaatacctctgcatgtgcttcatcctctgttgcaaaagcaccgtgaccttcttgccaaagaaactcacgactcctgcaatcaaaatttgtataagcacc |
53500052 |
T |
|
| Q |
517 |
caaaatgggactatgaacaagttccaatataaaaacaacatccaagactagttcacaagacgagtatccattcaaaaagaaaatgtgcagaactttaagg |
616 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53500053 |
caaaatgggactatgaacaagtttcaatataaaaacaacatccaagactagttcacaagacgagtatccattcaaaaagaaaatgtgcagaactttaagg |
53500152 |
T |
|
| Q |
617 |
cattatgtaagacataaaactacaacgcataatatcaatttttagaattttttaagccttttatttaaagcttgaaagttttgttatgttatatcaacca |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
53500153 |
cattatgtaagacataaaactacaacgcataatatcaatttttagaattt-------------tttaaagcttgaaagttttgttacgttacatcaacca |
53500239 |
T |
|
| Q |
717 |
acgcattgttataacatggaaaaaggaaaagatggtnnnnnnnnnngtacctgatgaacggtgtgggatctccgaccacccatctaacagcattgcacca |
816 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53500240 |
acacatcattataacatggaaaaaggaaaagatggtaaaaaaaaaagtacctgatgaacggtgtgggatctccgaccacccatctaacagcattgcacca |
53500339 |
T |
|
| Q |
817 |
ttgattaagtttcaaaggcaagtcacgatgtcccc |
851 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
53500340 |
ttgattaagtttcaaaggcaagtcacgatgtcccc |
53500374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 582 - 851
Target Start/End: Original strand, 53492184 - 53492454
Alignment:
| Q |
582 |
atccattcaaaaagaaaatgtgcagaactttaaggcattatgtaagacataaaactacaacgcataatatcaatttttagaattttttaagccttttatt |
681 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||| |||| |
|
|
| T |
53492184 |
atccattcaaaaagaaaatgggcagaattttaaggcattatgtaagacatataactacaatgcataatatcaatttttggaattgtttaagcctcttata |
53492283 |
T |
|
| Q |
682 |
taaagcttgaaagtttt-gttatgttatatcaaccaacgcattgttataacatggaaaaaggaaaagatggtnnnnnnnnnngtacctgatgaacggtgt |
780 |
Q |
| |
|
||||||||||||||||| ||| |||| | || ||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
53492284 |
taaagcttgaaagttttcattacgttacagcagccaacacattgttataacatggaaaaaggaaaagatggtaaaaaagaaagtacctgatgaatggtgt |
53492383 |
T |
|
| Q |
781 |
gggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggcaagtcacgatgtcccc |
851 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
53492384 |
gggatctccgaccacccatctaacaacattgcaccattgattgagtttcaaaggcaagtcacgatgtcccc |
53492454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 361 - 549
Target Start/End: Original strand, 53491898 - 53492087
Alignment:
| Q |
361 |
attacagatgccaaaaatgcatatagtaaggcagattcctaaaataactacttgatggaatacctctgcatgtgcttcatcctctgttgcaaaagcaccg |
460 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
53491898 |
attacagatgccaaagatgcatatattaaggcagattcctaaaataactacttgacggaatacctctgcatgtgcttcatcctctgttgcaaaagcactg |
53491997 |
T |
|
| Q |
461 |
tgaccttcttgccaaagaaactcacgacccctgcaatcaaaatttgtataagcaccc-aaaatgggactatgaacaagttccaatataaa |
549 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
53491998 |
tgaccttcttgccaaaggaactcacgactcctgcaatcaaaatttgaataagcaccctaaaatgggactataaacaagttccaatataaa |
53492087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 370 - 507
Target Start/End: Original strand, 16071131 - 16071268
Alignment:
| Q |
370 |
gccaaaaatgcatatagtaaggcagattcctaaaataactacttgatggaatacctctgcatgtgcttcatcctctgttgcaaaagcaccgtgaccttct |
469 |
Q |
| |
|
|||||| ||||| ||| ||||||| |||||||||| |||||||||||||||||||||||||| |||||| ||||| | |||||||||| ||| |||||| |
|
|
| T |
16071131 |
gccaaatatgcaaatattaaggcaaattcctaaaacaactacttgatggaatacctctgcatctgcttcttcctcagaagcaaaagcactgtgtccttct |
16071230 |
T |
|
| Q |
470 |
tgccaaagaaactcacgacccctgcaatcaaaatttgt |
507 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
16071231 |
tgccaaagaaactcacgactcctgcaatcaaaatttgt |
16071268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 22 - 168
Target Start/End: Original strand, 16070661 - 16070806
Alignment:
| Q |
22 |
ttggtgtaaattgcaccgccaaatgtctccatttcactttttgtaccctttatgacaggaacggccaaatactcttcgtatatacacctatataattcca |
121 |
Q |
| |
|
|||||| |||||||||||||| | || ||| | ||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16070661 |
ttggtgaaaattgcaccgccacaagtatcccctacacttttcgtaccctttatgacaggaactgccaaatactcttcgtatatacgcctatataattcca |
16070760 |
T |
|
| Q |
122 |
atatctcaagagcctgaaacaataacagtttagagtattttgaaaaa |
168 |
Q |
| |
|
||||||| ||||||||||| || |||| | |||||||||||||||| |
|
|
| T |
16070761 |
atatctcgagagcctgaaa-aacaacaatccagagtattttgaaaaa |
16070806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 766 - 851
Target Start/End: Original strand, 16071484 - 16071569
Alignment:
| Q |
766 |
cctgatgaacggtgtgggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggcaagtcacgatgtcccc |
851 |
Q |
| |
|
|||||| || ||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
16071484 |
cctgattaatggtatgggatctccaaccacccatctaaccgcattgcaccattgattaagtttcaaaggcaagtcgcggtgtcccc |
16071569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 53516521 - 53516572
Alignment:
| Q |
85 |
gccaaatactcttcgtatatacacctatataattccaatatctcaagagcct |
136 |
Q |
| |
|
||||||||||||||||| ||| ||| ||||||||||||||||||||||||| |
|
|
| T |
53516521 |
gccaaatactcttcgtacatatgcctgtataattccaatatctcaagagcct |
53516572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 1e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 395 - 517
Target Start/End: Complemental strand, 45354365 - 45354243
Alignment:
| Q |
395 |
attcctaaaataactacttgatggaatacctctgcatgtgcttcatcctctgttgcaaaagcaccgtgaccttcttgccaaagaaactcacgacccctgc |
494 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||| || |||||| |||| ||||||||||||| ||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
45354365 |
attcctgaaataactatttgatggaatacctctgtatctgcttcctcctttgttgcaaaagcagtgtgtccttcttgccaaagaaactcacgactcctgc |
45354266 |
T |
|
| Q |
495 |
aatcaaaatttgtataagcaccc |
517 |
Q |
| |
|
||| |||||| ||||||| |||| |
|
|
| T |
45354265 |
aattaaaattggtataagtaccc |
45354243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 766 - 851
Target Start/End: Complemental strand, 45353706 - 45353621
Alignment:
| Q |
766 |
cctgatgaacggtgtgggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggcaagtcacgatgtcccc |
851 |
Q |
| |
|
||||||||| |||||||||| | || | ||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
45353706 |
cctgatgaatggtgtgggattgctgaactcccatctaacaacattgcaccactgattaagcttcaaaggcaagtcacgatgtcccc |
45353621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 55 - 168
Target Start/End: Complemental strand, 45354776 - 45354663
Alignment:
| Q |
55 |
tcactttttgtaccctttatgacaggaacggccaaatactcttcgtatatacacctatataattccaatatctcaagagcctgaaacaataacagtttag |
154 |
Q |
| |
|
|||||||| ||||||||| ||||||||| |||||||||||||| || |||| || |||||||||||| |||||||| ||||||||||| | ||||||| |
|
|
| T |
45354776 |
tcacttttcttaccctttacgacaggaactgccaaatactcttcatagatacgccgatataattccaaaatctcaagcacctgaaacaattatagtttag |
45354677 |
T |
|
| Q |
155 |
agtattttgaaaaa |
168 |
Q |
| |
|
| |||| |||||| |
|
|
| T |
45354676 |
aacatttagaaaaa |
45354663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University