View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2838_low_4 (Length: 605)

Name: NF2838_low_4
Description: NF2838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2838_low_4
NF2838_low_4
[»] chr4 (2 HSPs)
chr4 (11-237)||(25432395-25432626)
chr4 (11-238)||(25428195-25428426)
[»] chr7 (5 HSPs)
chr7 (311-519)||(17258746-17258954)
chr7 (11-237)||(35943054-35943284)
chr7 (238-312)||(17259042-17259116)
chr7 (356-405)||(17274426-17274475)
chr7 (559-590)||(17258631-17258662)
[»] chr5 (2 HSPs)
chr5 (11-237)||(20334360-20334590)
chr5 (11-237)||(20330159-20330389)
[»] chr1 (3 HSPs)
chr1 (11-237)||(49214237-49214467)
chr1 (12-239)||(49210746-49210984)
chr1 (134-192)||(32335155-32335214)
[»] chr3 (1 HSPs)
chr3 (11-237)||(20749440-20749673)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 25432626 - 25432395
Alignment:
Q  11 cagagagaatatggctgcaaaactatatttattttaatgagaaactgatgttatattacaaatcaaaagaaataac-----gaataaaatgctccttaat 105  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||     |||||||||||||||||||    
T  25432626 cagagagaatatggctgcaaaactatttttattttaataagaaactgatgttatattacaaatcaaaagaaataactgaatgaataaaatgctccttaat 25432527  T
Q  106 tatagcaccactacttactaagtgaaactaacttgtccactaaaacaaaataatagatattttgctttgacttattcaaacttaaaacaaatagaaaata 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25432526 tatagcaccactacttactaagtgaaactaacttgtccactaaaacaaaataatagatattttgctttgacttattcaaatttaaaacaaatagaaaata 25432427  T
Q  206 tattagcagcatccaaagacacgttttcaata 237  Q
    | ||||||||||||||||||||||||||||||    
T  25432426 tgttagcagcatccaaagacacgttttcaata 25432395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 25428426 - 25428195
Alignment:
Q  11 cagagagaatatggctgcaaaactatatttattttaatgagaaactgatgttatattacaaatcaaaagaaataac-----gaataaaatgctccttaat 105  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||     |||||||||| | ||||||    
T  25428426 cagagagaatatggctgcaaaactatttttattt-aatgagaaactgatgttatattacaaatcaaaagaaataactgaatgaataaaatggttcttaat 25428328  T
Q  106 tatagcaccactacttactaagtgaaactaacttgtccactaaaacaaaataatagatattttgctttgacttattcaaacttaaaacaaatagaaaata 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  25428327 tatagcaccactacttactaagtgaaactaacttgtccactaaaacaaaataatagatcttttgctttgacttattcaaatttaaaacaaatagaaaata 25428228  T
Q  206 tattagcagcatccaaagacacgttttcaatat 238  Q
    |||||||||||||||||||||| ||||||||||    
T  25428227 tattagcagcatccaaagacacattttcaatat 25428195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 311 - 519
Target Start/End: Complemental strand, 17258954 - 17258746
Alignment:
Q  311 tgcttcatacattgagtggagtaattaatcttcacgtaaatcttaatatctgaattaaaatgcttatctgaagcagttgcttcttcagtgattttgattt 410  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17258954 tgcttcatacattgagtggagtaattaatcttcgcgtaaatcttaatatctgaattaaaatgcttatctgaagcatttgcttcttcagtgattttgattt 17258855  T
Q  411 taaaaattcgttgaaaagtgtagggctgttaaggtatgtgaagatatttgaaaaattcgttcaaataggacaacaccgtttaataaagtacacgattaaa 510  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  17258854 taaaaattcgttgaaaagtgtagggctgttaaggtatgttaagatatttgaaaaattcgttcaaatagtacaacaccgtttaatgaagtacacgattaaa 17258755  T
Q  511 gccataatc 519  Q
    |||||||||    
T  17258754 gccataatc 17258746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 35943284 - 35943054
Alignment:
Q  11 cagagagaatatggctgcaaaactatatttattttaatgagaaactgatgttatattacaaatcaaaagaaataac-----gaataaaatgctccttaat 105  Q
    ||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||    
T  35943284 cagagagaatagggctgcaaaactatttttattt-aatgagaaactgatgttatattacaaatcaaaagaaataactgaatgaataaaatgctccttaat 35943186  T
Q  106 tatagcaccactacttactaagtgaaactaacttgtccactaaaacaaaataatagatattttgctttgacttattcaaacttaaaacaaatagaaaata 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35943185 tatagcaccactacttactaagtgaaactaacttgtccactaaaacaaaataatagatattttgctttgacttattcaaatttaaaacaaatagaaaata 35943086  T
Q  206 tattagcagcatccaaagacacgttttcaata 237  Q
    | ||||||||||||||||||||||||||||||    
T  35943085 tgttagcagcatccaaagacacgttttcaata 35943054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 17259116 - 17259042
Alignment:
Q  238 tgtggtttggtataatgtgcaatgcacatgttatttgacttgtttacgtattttgcttcattaaggtttgatatg 312  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17259116 tgtggtttggtataatttgcaatgcacatgttatttgacttgtttacgtattttgcttcgttaaggtttgatatg 17259042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 17274475 - 17274426
Alignment:
Q  356 atatctgaattaaaatgcttatctgaagcagttgcttcttcagtgatttt 405  Q
    ||||||||||||||||||| |||||||||| ||||| |||||||||||||    
T  17274475 atatctgaattaaaatgctaatctgaagcatttgctacttcagtgatttt 17274426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 559 - 590
Target Start/End: Complemental strand, 17258662 - 17258631
Alignment:
Q  559 gctttggtaatagaagcctctcctgatttaac 590  Q
    ||||||||||||||||||||||||||||||||    
T  17258662 gctttggtaatagaagcctctcctgatttaac 17258631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 188; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 20334360 - 20334590
Alignment:
Q  11 cagagagaatatggctgcaaaactatatttattttaatgagaaactgatgttatattacaaatcaaaagaaataac-----gaataaaatgctccttaat 105  Q
    ||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||    
T  20334360 cagagagaatagggctgcaaaactatttttattt-aatgagaaactgatgttatattacaaatcaaaagaaataactgaatgaataaaatgctccttaat 20334458  T
Q  106 tatagcaccactacttactaagtgaaactaacttgtccactaaaacaaaataatagatattttgctttgacttattcaaacttaaaacaaatagaaaata 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20334459 tatagcaccactacttactaagtgaaactaacttgtccactaaaacaaaataatagatattttgctttgacttattcaaatttaaaacaaatagaaaata 20334558  T
Q  206 tattagcagcatccaaagacacgttttcaata 237  Q
    | ||||||||||||||||||||||||||||||    
T  20334559 tgttagcagcatccaaagacacgttttcaata 20334590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 20330159 - 20330389
Alignment:
Q  11 cagagagaatatggctgcaaaactatatttattttaatgagaaactgatgttatattacaaatcaaaagaaataac-----gaataaaatgctccttaat 105  Q
    ||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||    
T  20330159 cagagagaatagggctgcaaaactatttttattt-aatgagaaactgatgttatattacaaatcaaaagaaataactgaatgaataaaatgctccttaat 20330257  T
Q  106 tatagcaccactacttactaagtgaaactaacttgtccactaaaacaaaataatagatattttgctttgacttattcaaacttaaaacaaatagaaaata 205  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20330258 tatagcaccactacttattaagtgaaactaacttgtccactaaaacaaaataatagatattttgctttgacttattcaaatttaaaacaaatagaaaata 20330357  T
Q  206 tattagcagcatccaaagacacgttttcaata 237  Q
    | ||| ||||||||||||||||||||||||||    
T  20330358 tgttaacagcatccaaagacacgttttcaata 20330389  T

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Target: chr1 (Bit Score: 184; Significance: 3e-99; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 49214467 - 49214237
Alignment:
Q  11 cagagagaatatggctgcaaaactatatttattttaatgagaaactgatgttatattacaaatcaaaagaaataac-----gaataaaatgctccttaat 105  Q
    |||| ||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||    
T  49214467 cagatagaatattgctgcaaaactatttttattt-aatgagaaactgatgttatattacaaatcaaaagaaataactgaatgaataaaatgctccttaat 49214369  T
Q  106 tatagcaccactacttactaagtgaaactaacttgtccactaaaacaaaataatagatattttgctttgacttattcaaacttaaaacaaatagaaaata 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  49214368 tatagcaccactacttactaagtgaaactaacttgtccactaaaacaaaataatagatattttgctttgacttattcaaatttaaaacaaatagaaaata 49214269  T
Q  206 tattagcagcatccaaagacacgttttcaata 237  Q
    | ||||||||||||||||||||||||||||||    
T  49214268 tgttagcagcatccaaagacacgttttcaata 49214237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 49210984 - 49210746
Alignment:
Q  12 agagagaatatggctgcaaaactatatttattttaatgagaaactgatgttatattacaaatcaaa-----agaaataac-------gaataaaatgctc 99  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||     |||||||||       |||||||||||||    
T  49210984 agagagaatatggctgcaaaactatttttattt-aatgagaaactgatgttatattacaaatcaaatcaaaagaaataactgaatatgaataaaatgctc 49210886  T
Q  100 cttaattatagcaccactacttactaagtgaaactaacttgtccactaaaacaaaataatagatattttgctttgacttattcaaacttaaaacaaatag 199  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  49210885 cttaattatagcaccactacttactaagtgaaactaacttgtctagtaaaacaaaataatagatattttgctttgacttattcaaacttaaaacaaacag 49210786  T
Q  200 aaaatatattagcagcatccaaagacacgttttcaatatg 239  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  49210785 aaaatatgttagcagcatccaaagacacgttttcaatatg 49210746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 32335214 - 32335155
Alignment:
Q  134 taacttgtccactaaaa-caaaataatagatattttgctttgacttattcaaacttaaaa 192  Q
    |||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  32335214 taacttgtccgctaaaaacaaaataatagatattttgccttgacatattcaaacttaaaa 32335155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 175; Significance: 6e-94; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 20749673 - 20749440
Alignment:
Q  11 cagagagaatatggctgcaaaactatatttattttaatgagaaactgatgttatat--tacaaatcaaaagaaataac-----gaataaaatgctcctta 103  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||     |||||||||||||||||    
T  20749673 cagagagaatatggctgcgaaactatgtttattttaatgagaaactgatgttatatattacaaatcaaaagaaataactgaatgaataaaatgctcctta 20749574  T
Q  104 attatagcaccactacttactaagtgaaactaacttgtccactaaaacaaaataatagatattttgctttgacttattcaaacttaaaacaaatagaaaa 203  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20749573 attatagcaccactatttactaagtgaaactaacttgtccacaaaaacaaaataatagatattttgctttgacttattcaaacttaaaacaaatcgaaaa 20749474  T
Q  204 tatattagcagcatccaaagacacgttttcaata 237  Q
    ||| |||||| |||||||||||||||||||||||    
T  20749473 tatgttagcaacatccaaagacacgttttcaata 20749440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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