View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2838_low_5 (Length: 468)
Name: NF2838_low_5
Description: NF2838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2838_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 44 - 458
Target Start/End: Complemental strand, 21018224 - 21017795
Alignment:
| Q |
44 |
gcatatagcacctgagtatctcttaactagaaggtcttcagaaaagatcgatgtttttgcatatggtgtgatgcttcttgaactaataactggaccgagg |
143 |
Q |
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| T |
21018224 |
gcatatagcacctgagtatctcttaactagaaggtcttcagaaaagatcgatgtttttgcatatggtgtgatgcttcttgaactaataactggaccgagg |
21018125 |
T |
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| Q |
144 |
gcttctgacctagcacgtcttgccannnnnnnnnnnnnnnnnnnnttgcttgatttggtaggttttcctttaactataaatatgtttttagttgttgaac |
243 |
Q |
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| T |
21018124 |
gcttctgacctagcacgtcttgccaatgatgatgatgatgtgatgttgcttgatttggtaggttttcctttaactataaatatgtttttagttgttgaac |
21018025 |
T |
|
| Q |
244 |
aaatttttagttaaatcctgcattaaacactgcggcatgcattaatttcttcacgatgttctatacgctcaagcatcgttatttagtgtatcatcattcc |
343 |
Q |
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|||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21018024 |
aaatttttagttaaatcctgtattcaacactgcggcatgcattaatttcttcaatatgttctatacgctcaagcatcattatttagtgtatcatcattcc |
21017925 |
T |
|
| Q |
344 |
tttctcaatacttgat---------------attttgtgaaagtttcttcaatgaccaaaactttacgttttactaatttttgaagggaaggttactttt |
428 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||| |
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| T |
21017924 |
tttctcaatacttgatatttgttttattgatattttgtgaaagtttcttcaatgaccaaaactttacgttttactaattttttaagggagggttgctttt |
21017825 |
T |
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| Q |
429 |
attttgcttagatatgttttggtccctatg |
458 |
Q |
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| T |
21017824 |
attttgcttagatatgttttggtccctatg |
21017795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 1436052 - 1436200
Alignment:
| Q |
18 |
actactgctgtttttggtacggttgggcatatagcacctgagtatctcttaactagaaggtcttcagaaaagatcgatgtttttgcatatggtgtgatgc |
117 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1436052 |
actactgctgtctttggtacgattgggcatatagcacctgaatatctcttaactggaaggtcttcagaaaagaccgatgtttttgcatatggtgtgatgc |
1436151 |
T |
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| Q |
118 |
ttcttgaactaataactggaccgagggcttctgacctagcacgtcttgc |
166 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1436152 |
ttcttgaactaataactggaccgagggcttctgatctagcacgtcttgc |
1436200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 1429442 - 1429592
Alignment:
| Q |
18 |
actactgctgtttttggtacggttgggcatatagcacctgagtatctcttaactagaaggtcttcagaaaagatcgatgtttttgcatatggtgtgatgc |
117 |
Q |
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||||||||||| ||||||| |||| ||||||||||||||||| || | |||| ||| |||||||||||||| |||||||||| |||||||||||||| |
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| T |
1429442 |
actactgctgtccgtggtacgattggacatatagcacctgagtacctgtcaactggaaagtcttcagaaaagactgatgtttttggatatggtgtgatgc |
1429541 |
T |
|
| Q |
118 |
ttcttgaactaataactggaccgagggcttctgacctagcacgtcttgcca |
168 |
Q |
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| T |
1429542 |
ttcttgaactaataactggacaaagggcttttgatctagcacgtcttgcca |
1429592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 1448875 - 1449024
Alignment:
| Q |
18 |
actactgctgtttttggtacggttgggcatatagcacctgagtatctcttaactagaaggtcttcagaaaagatcgatgtttttgcatatggtgtgatgc |
117 |
Q |
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|||||||||||| ||||| ||||||||||| |||||||||| || | ||| ||| |||||||||||||| |||||||||| ||||||| ||||| |
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| T |
1448875 |
actactgctgttcaaggtacacttgggcatataccacctgagtacctgtcaaccggaaagtcttcagaaaagactgatgtttttggatatggtacgatgc |
1448974 |
T |
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| Q |
118 |
ttcttgaactaataactggaccgagggcttctgacctagcacgtcttgcc |
167 |
Q |
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|||||||||| | |||||||| |||||||| ||||||||||||||||||| |
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| T |
1448975 |
ttcttgaactgacaactggacagagggcttttgacctagcacgtcttgcc |
1449024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 363
Target Start/End: Original strand, 1429725 - 1429811
Alignment:
| Q |
277 |
ggcatgcattaatttcttcacgatgttctatacgctcaagcatcgttatttagtgtatcatcattcctttctcaatacttgatattt |
363 |
Q |
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|||||||||| || ||||||| |||||||||| ||||||||||| |||| ||||||||||| || |||| |||||||||| |||||| |
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| T |
1429725 |
ggcatgcattgatctcttcacaatgttctatatgctcaagcatcattatctagtgtatcattatcccttgctcaatacttaatattt |
1429811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 1441471 - 1441620
Alignment:
| Q |
18 |
actactgctgtttttggtacggttgggcatatagcacctgagtatctcttaactagaaggtcttcagaaaagatcgatgtttttgcatatggtgtgatgc |
117 |
Q |
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|||||||||||| ||||| ||||||||||| | |||||||| || | ||| ||| |||||||||||||| |||||||||| |||||| ||||| |
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| T |
1441471 |
actactgctgttcgaggtacacttgggcatataccccctgagtacctgtcaaccggaaagtcttcagaaaagactgatgtttttggatatggcacgatgc |
1441570 |
T |
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| Q |
118 |
ttcttgaactaataactggaccgagggcttctgacctagcacgtcttgcc |
167 |
Q |
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|||| ||||| | ||||||| |||||||| ||| ||||||||||||||| |
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| T |
1441571 |
ttctagaactgacaactggaaagagggcttttgatctagcacgtcttgcc |
1441620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 1455631 - 1455760
Alignment:
| Q |
18 |
actactgctgtttttggtacggttgggcatatagcacctgagtatctcttaactagaaggtcttcagaaaagatcgatgtttttgcatatggtgtgatgc |
117 |
Q |
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|||||||||||| ||||| ||||| |||||||||| ||||| || | ||| ||| |||||||||||||| ||||||| || ||||||| |||||| |
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| T |
1455631 |
actactgctgttcaaggtacacttgggtatatagcacccgagtacctgtcaacaggaaagtcttcagaaaagactgatgtttatggatatggtatgatgc |
1455730 |
T |
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| Q |
118 |
ttcttgaactaataactggaccgagggctt |
147 |
Q |
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| T |
1455731 |
tttttgaactaataactggacagagtgctt |
1455760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 1436217 - 1436273
Alignment:
| Q |
189 |
ttgcttgatttggtaggttttcctttaactataaatatgtttttagttgttgaacaa |
245 |
Q |
| |
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|||||||||| ||||||||||||||||||| ||||||||| ||||| ||||||||| |
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| T |
1436217 |
ttgcttgattgggtaggttttcctttaactttaaatatgtcattagtagttgaacaa |
1436273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 1436299 - 1436348
Alignment:
| Q |
246 |
atttttagttaaatcctgcattaaacactgcggcatgcattaatttcttc |
295 |
Q |
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| T |
1436299 |
atttttagttaaattctgcctccaacactgtggcatgcattaatttcttc |
1436348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 337
Target Start/End: Original strand, 1441716 - 1441773
Alignment:
| Q |
278 |
gcatgcattaatttcttcacgatgttctatacgctcaagcatcgttatttagtgtatcat |
337 |
Q |
| |
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||||| |||||| |||||| ||||||||||| ||||||||| |||||||||||||||| |
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| T |
1441716 |
gcatgaattaatctcttcataatgttctatac--tcaagcatcattatttagtgtatcat |
1441773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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